Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Forward (+)

18982300 .. 18983025

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028121

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGGTTTAGCTTCACATGGGAGAAACCTTGCATTTCAGATTGGTAATCCAAAATCAAGGCTTTTGATTCGGGTCCACTACTGCAGTTATAAATCAGAGAGTAAAAAGCAAGAGGATGATGAAACAGTGAGGGAAATCTGTACCATTCTGAAGCGAAGCAGAGAGTGGGAGTCCGTGTTGAGCTCATCAAGGTTTCCCAAGAAGCTAAACCCTTGTGTGGTTCGATCCGTTCTTCAACAACACCACCAAGTTGGTGACCCAGAAAGACTTTTAAGTTTCTTTGATTGGTCTGGTGCCCAATTGGGTGTGCTCCCAAATTTGCATTCTTTTTCGATTATGGCTGTTGTTTTGTGTAATTCCAAGCTTTTTGGGCATGCCCATGGTGTGTTGGAGAGAATGGTTAGGACCCAGAAGCCGGCTTTAGAAGTTTTGGATTGTGTTGTTAGGTGTTGTAGAGAGTTTGAGGGGTCTGATATGGTGGTTTTTGAGATTTTGATTAATGTGTTTAAGATGGGGGGTTGGTTTTATGAGGCTGCTGATGTGTTTTTCGGTGTTAGGAGTGTTGGGATTTCGCCGAGATTGGAATGCTGTAATTCTCTGTTGAATGAGTTGTTGAAGGGTAATAGGATGGAGAAGACTCACACCGTGGTGATGAATGATTTGACCTCAAGGTTCAATTTCTTCTTCTTTTTGCCATCTGTGGTGAAGCATATCACAGAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

242

Amino Acids

27.61

Weight (kDa)

8.73

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	170
AdeI	CACNNNGTG	1 cut(s)	646
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	217, 415
AgsI	TTSAA	4 cut(s)	236, 604, 616, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
AleI	CACNNNNGTG	1 cut(s)	647
AluBI	AGCT	4 cut(s)	11, 183, 205, 364
AluI	AGCT	4 cut(s)	11, 183, 205, 364
Alw21I	GWGCWC	2 cut(s)	185, 312
AlwI	GGATC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	1 cut(s)	316
AseI	ATTAAT	1 cut(s)	498
AspS9I	GGNCC	2 cut(s)	73, 405
AsuHPI	GGTGA	3 cut(s)	266, 661, 715
AvaII	GGWCC	2 cut(s)	73, 405
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	2 cut(s)	185, 312
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	3 cut(s)	505, 622, 703
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
Bme18I	GGWCC	2 cut(s)	73, 405
BmgT120I	GGNCC	2 cut(s)	73, 405
BmiI	GGNNCC	3 cut(s)	74, 295, 407
BpiI	GAAGAC	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	652
BsaJI	CCNNGG	2 cut(s)	379, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 415
Bse118I	RCCGGY	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	379, 645
BseGI	GGATG	2 cut(s)	121, 633
BseLI	CCNNNNNNNGG	2 cut(s)	217, 415
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	520
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	2 cut(s)	185, 312
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	217, 415
BsmI	GAATGC	2 cut(s)	322, 590
Bsp1286I	GDGCHC	3 cut(s)	185, 298, 312
Bsp143I	GATC	1 cut(s)	224
Bsp19I	CCATGG	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	74, 295, 407
BspMAI	CTGCAG	1 cut(s)	86
BspPI	GGATC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	379, 645
BssMI	GATC	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	127, 646
BstC8I	GCNNGC	2 cut(s)	375, 417
BstDSI	CCRYGG	2 cut(s)	379, 645
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	121, 633
BstKTI	GATC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	377
BstPI	GGTNACC	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	641
BstXI	CCANNNNNNTGG	1 cut(s)	251
BtgI	CCRYGG	2 cut(s)	379, 645
BtsCI	GGATG	2 cut(s)	121, 633
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	375, 417
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	73, 405
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	3 cut(s)	17, 374, 380
CviJI	RGCY	9 cut(s)	11, 61, 183, 205, 341, 364, 415, 419, 533
CviKI_1	RGCY	9 cut(s)	11, 61, 183, 205, 341, 364, 415, 419, 533
CviQI	GTAC	1 cut(s)	141
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
DraIII	CACNNNGTG	1 cut(s)	646
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	73, 405
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	405
EcoO65I	GGTNACC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	3 cut(s)	20, 377, 383
FaiI	YATR	8 cut(s)	18, 90, 338, 375, 381, 476, 528, 711
FatI	CATG	3 cut(s)	16, 373, 379
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	2 cut(s)	128, 640
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	534
GluI	GCNGC	1 cut(s)	534
HapII	CCGG	1 cut(s)	416
Hin1II	CATG	3 cut(s)	20, 377, 383
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	3 cut(s)	67, 170, 637
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	3 cut(s)	266, 661, 715
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	4 cut(s)	39, 97, 150, 472
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	610
HpyCH4III	ACNGT	2 cut(s)	127, 646
HpyCH4V	TGCA	3 cut(s)	32, 84, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	20, 377, 383
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	4 cut(s)	273, 276, 422, 429
Lsp1109I	GCAGC	1 cut(s)	520
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	4 cut(s)	224, 646, 673, 676
MfeI	CAATTG	1 cut(s)	299
MhlI	GDGCHC	3 cut(s)	185, 298, 312
MluCI	AATT	5 cut(s)	299, 316, 355, 592, 676
MlyI	GAGTC	2 cut(s)	179, 631
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	5 cut(s)	106, 123, 457, 523, 676
MroNI	GCCGGC	1 cut(s)	415
MseI	TTAA	4 cut(s)	272, 498, 507, 724
MslI	CAYNNNNRTG	2 cut(s)	378, 647
MspI	CCGG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	2 cut(s)	322, 590
MwoI	GCNNNNNNNGC	1 cut(s)	370
NaeI	GCCGGC	1 cut(s)	417
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	1 cut(s)	224
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	20, 377, 383
NlaIV	GGNNCC	3 cut(s)	74, 295, 407
NmeAIII	GCCGAG	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	377
OliI	CACNNNNGTG	1 cut(s)	647
PaeI	GCATGC	1 cut(s)	377
PctI	GAATGC	2 cut(s)	322, 590
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	2 cut(s)	178, 631
PpsI	GAGTC	2 cut(s)	178, 631
PpuMI	RGGWCCY	1 cut(s)	405
PshBI	ATTAAT	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	405
PspEI	GGTNACC	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	74, 295, 407
PspPI	GGNCC	2 cut(s)	73, 405
PspPPI	RGGWCCY	1 cut(s)	405
PstI	CTGCAG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	2 cut(s)	378, 647
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	4 cut(s)	272, 498, 507, 724
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	1 cut(s)	224
Sau96I	GGNCC	2 cut(s)	73, 405
SchI	GAGTC	2 cut(s)	179, 631
SduI	GDGCHC	3 cut(s)	185, 298, 312
SetI	ASST	9 cut(s)	13, 30, 185, 194, 207, 366, 449, 668, 674
SfcI	CTRYAG	1 cut(s)	82
SinI	GGWCC	2 cut(s)	73, 405
SmiMI	CAYNNNNRTG	2 cut(s)	378, 647
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	5 cut(s)	299, 316, 355, 592, 676
SspI	AATATT	1 cut(s)	722
SstI	GAGCTC	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	127, 646
TaqI	TCGA	2 cut(s)	223, 332
TasI	AATT	5 cut(s)	299, 316, 355, 592, 676
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	4 cut(s)	272, 498, 507, 724
Tru9I	TTAA	4 cut(s)	272, 498, 507, 724
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	135, 668
TspGWI	ACGGA	2 cut(s)	163, 217
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	73, 405
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.