Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Reverse (-)

63398901 .. 63399851

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG446700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTTAGGACCCGGAAGCCGGCTTTAGAAGTTTTGGATTGTGTTGTTAGGTGTTTTAGAGAGTTTGAGGGGTCTGATATGGTGGTTTTTGAGATTTTGATTAATGTGTTTACGGTGGGGGGTGGGTTTTATGAGGCTGCTGATGTGTTTTTGGGTGTTAGGAGTGTTGGGATTTCGCCGAGATTGGAATGCTGTAATTCTCTGTTGAATGAGTTGTTGAAGGCAAAAGATATTCTATCAAGTGTAGGGAAGAAAACGGTGGAGTACACGGTGCCATTAGCAGAGAAAACTAAAGACATGGCTGTGTTTGCAGGTAAGACCACTCTGCATTATGTTGGTCATGTTGCGGTGGATTTGAAGGACAAGGCCGCTGTGGCAGGTTGGACTGCAGCGCACGACAGAACTGAGGCACCAGTGGAGGGAACCAAAGCAGCTGCAAGAGTAGTTGCCGGAGCAGCAGGGTATGCTGGTCGTGAGGCTGTGGATATTGTGTCCAAGCCTTTTGAGTGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

171

Amino Acids

18.34

Weight (kDa)

6.31

Isoelectric Point (pI)

26.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	302, 368
AccB1I	GGYRCC	2 cut(s)	271, 409
AciI	CCGC	2 cut(s)	347, 369
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	19, 419
AgsI	TTSAA	3 cut(s)	208, 220, 358
AluBI	AGCT	1 cut(s)	434
AluI	AGCT	1 cut(s)	434
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	6 cut(s)	137, 389, 431, 434, 455, 510
AseI	ATTAAT	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	9
BanI	GGYRCC	2 cut(s)	271, 409
BbvI	GCAGC	6 cut(s)	124, 401, 421, 443, 467, 497
BcnI	CCSGG	1 cut(s)	13
BfmI	CTRYAG	1 cut(s)	387
BfuAI	ACCTGC	2 cut(s)	302, 368
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	7 cut(s)	138, 369, 390, 432, 435, 456, 511
BlsI	GCNGC	7 cut(s)	139, 370, 391, 433, 436, 457, 512
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	4 cut(s)	11, 273, 411, 424
BmrFI	CCNGG	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 419
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	413
BseLI	CCNNNNNNNGG	2 cut(s)	19, 419
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	413
BseXI	GCAGC	6 cut(s)	124, 401, 421, 443, 467, 497
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	2 cut(s)	271, 409
BsiSI	CCGG	3 cut(s)	13, 20, 450
BslI	CCNNNNNNNGG	2 cut(s)	19, 419
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	368
BspACI	CCGC	2 cut(s)	347, 369
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	4 cut(s)	11, 273, 411, 424
BspMAI	CTGCAG	1 cut(s)	391
BspMI	ACCTGC	2 cut(s)	302, 368
BspT107I	GGYRCC	2 cut(s)	271, 409
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	19
Bst4CI	ACNGT	3 cut(s)	115, 259, 271
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 374, 455, 464
BstSCI	CCNGG	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	6 cut(s)	124, 401, 421, 443, 467, 497
BsuRI	GGCC	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	2 cut(s)	302, 368
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	298, 341
CviJI	RGCY	8 cut(s)	19, 23, 137, 302, 368, 434, 479, 499
CviKI_1	RGCY	8 cut(s)	19, 23, 137, 302, 368, 434, 479, 499
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	9
FaeI	CATG	2 cut(s)	301, 344
FaiI	YATR	6 cut(s)	80, 132, 299, 333, 342, 465
FatI	CATG	2 cut(s)	297, 340
Fnu4HI	GCNGC	7 cut(s)	138, 369, 390, 432, 435, 456, 511
Fsp4HI	GCNGC	7 cut(s)	138, 369, 390, 432, 435, 456, 511
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	7 cut(s)	138, 369, 390, 432, 435, 456, 511
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	3 cut(s)	13, 20, 450
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	2 cut(s)	301, 344
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HpaII	CCGG	3 cut(s)	13, 20, 450
Hpy166II	GTNNAC	2 cut(s)	111, 267
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	2 cut(s)	111, 267
HpyAV	CCTTC	2 cut(s)	214, 352
HpyCH4III	ACNGT	3 cut(s)	115, 259, 271
HpyCH4V	TGCA	4 cut(s)	311, 328, 389, 437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 374, 455, 464
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	301, 344
HspAI	GCGC	1 cut(s)	392
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	452
LpnPI	CCDG	8 cut(s)	26, 33, 297, 363, 426, 444, 453, 463
Lsp1109I	GCAGC	6 cut(s)	124, 401, 421, 443, 467, 497
MboII	GAAGA	1 cut(s)	262
MluCI	AATT	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	5 cut(s)	61, 127, 400, 412, 469
MroNI	GCCGGC	1 cut(s)	19
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	302
MspA1I	CMGCKG	2 cut(s)	371, 434
MspI	CCGG	3 cut(s)	13, 20, 450
MspR9I	CCNGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	308, 374, 455, 464
NaeI	GCCGGC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	13
NgoMIV	GCCGGC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	301, 344
NlaIV	GGNNCC	4 cut(s)	11, 273, 411, 424
NmeAIII	GCCGAG	1 cut(s)	204
PctI	GAATGC	1 cut(s)	194
PdiI	GCCGGC	1 cut(s)	21
PkrI	GCNGC	7 cut(s)	139, 370, 391, 433, 436, 457, 512
PpuMI	RGGWCCY	1 cut(s)	9
PshBI	ATTAAT	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	9
PspN4I	GGNNCC	4 cut(s)	11, 273, 411, 424
PspPI	GGNCC	1 cut(s)	9
PspPPI	RGGWCCY	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	7 cut(s)	138, 369, 390, 432, 435, 456, 511
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	4 cut(s)	53, 316, 382, 436
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	2 cut(s)	347, 369
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	3 cut(s)	115, 259, 271
TasI	AATT	1 cut(s)	196
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	6 cut(s)	137, 389, 431, 434, 455, 510
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	9
VspI	ATTAAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.