Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Reverse (-)

78387516 .. 78389397

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGTTTAGCTTCACATGGGAGAAACCTTGCATTTCAGATTGGTAATCCAAAATCAAGGCTTTTGATTCGGGTCCACTACTACTGCAGTTATAAATCAGAGAGTAAAAAGCTTCAAGATCTTGATGAAACAGTGAGGGAAATCTGTACCATTCTGAAGCGAAGCAGAGAGTGGGAGTCCGTGTTGAGCTCATCAGGGTTTCCCAAGAAGCTAAACCCTTGTGTGGTTCGATCCGTTCTTCAACAACACCACCAGGTTGGTGACCCAGAAAGACTTTTAAGTTTCTTTGATTGGTCTGGTGCCCAATTGGGTGTGCTCCCAAATTTGCATTCTTTTTCGATTATGGCTGTTGTTTTGTGTAATTCCAAGCTTTTTGGGCATGCCCATGGTGTGTTGGAGAGAATGGTTAGGACCCGGAAGCCGGCTTTAGAAGTTTTGGATTGTGTTGTTAGGTGTTTTAGAGAGTTTGAGGGGTCTGATATGGTGGTTTTTGAGATTTTGATTAATGTGTTTACGATGGGGGGGTTGGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

178

Amino Acids

20.19

Weight (kDa)

8.98

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	299
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	223, 421
AgsI	TTSAA	2 cut(s)	116, 242
AjnI	CCWGG	1 cut(s)	252
AjuI	GAANNNNNNNTTGG	2 cut(s)	313, 345
AluBI	AGCT	5 cut(s)	11, 112, 189, 211, 370
AluI	AGCT	5 cut(s)	11, 112, 189, 211, 370
Alw21I	GWGCWC	2 cut(s)	191, 318
AlwI	GGATC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	322
AseI	ATTAAT	1 cut(s)	504
AspS9I	GGNCC	2 cut(s)	73, 411
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	73, 411
BaeGI	GKGCMC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	2 cut(s)	191, 318
BccI	CCATC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	415
BfmI	CTRYAG	1 cut(s)	85
BglII	AGATCT	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	254, 415
Bme18I	GGWCC	2 cut(s)	73, 411
BmgT120I	GGNCC	2 cut(s)	73, 411
BmiI	GGNNCC	3 cut(s)	74, 301, 413
BmrFI	CCNGG	2 cut(s)	254, 415
BpuMI	CCSGG	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 421
Bse118I	RCCGGY	1 cut(s)	421
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	223, 421
BseSI	GKGCMC	1 cut(s)	304
BshNI	GGYRCC	1 cut(s)	299
BsiHKAI	GWGCWC	2 cut(s)	191, 318
BsiSI	CCGG	2 cut(s)	415, 422
BslI	CCNNNNNNNGG	2 cut(s)	223, 421
BsmI	GAATGC	1 cut(s)	328
Bsp1286I	GDGCHC	3 cut(s)	191, 304, 318
Bsp143I	GATC	2 cut(s)	118, 230
Bsp19I	CCATGG	1 cut(s)	385
BspLI	GGNNCC	3 cut(s)	74, 301, 413
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	2 cut(s)	118, 230
BssT1I	CCWWGG	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	381, 423
BstDSI	CCRYGG	1 cut(s)	385
BstEII	GGTNACC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	121, 233
BstMBI	GATC	2 cut(s)	118, 230
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	383
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	252, 413
BstSFI	CTRYAG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	381, 423
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	73, 411
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	3 cut(s)	17, 380, 386
CviJI	RGCY	9 cut(s)	11, 61, 112, 189, 211, 347, 370, 421, 425
CviKI_1	RGCY	9 cut(s)	11, 61, 112, 189, 211, 347, 370, 421, 425
CviQI	GTAC	1 cut(s)	147
DpnI	GATC	2 cut(s)	120, 232
DpnII	GATC	2 cut(s)	118, 230
Ecl136II	GAGCTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	191
Eco47I	GGWCC	2 cut(s)	73, 411
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	411
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	3 cut(s)	20, 383, 389
FaiI	YATR	7 cut(s)	18, 93, 344, 381, 387, 482, 535
FatI	CATG	3 cut(s)	16, 379, 385
FriOI	GRGCYC	1 cut(s)	191
HapII	CCGG	2 cut(s)	415, 422
Hin1II	CATG	3 cut(s)	20, 383, 389
HindIII	AAGCTT	2 cut(s)	110, 368
HinfI	GANTC	2 cut(s)	67, 176
HpaII	CCGG	2 cut(s)	415, 422
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	76, 513
Hpy188I	TCNGA	4 cut(s)	39, 100, 156, 478
Hpy188III	TCNNGA	2 cut(s)	116, 122
Hpy8I	GTNNAC	2 cut(s)	76, 513
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	32, 87, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
Hsp92II	CATG	3 cut(s)	20, 383, 389
KroI	GCCGGC	1 cut(s)	421
KroNI	GCCGGC	1 cut(s)	423
Kzo9I	GATC	2 cut(s)	118, 230
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	7 cut(s)	180, 239, 266, 279, 282, 428, 435
MabI	ACCWGGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	2 cut(s)	120, 232
MboI	GATC	2 cut(s)	118, 230
MboII	GAAGA	1 cut(s)	230
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	3 cut(s)	191, 304, 318
MluCI	AATT	3 cut(s)	305, 322, 361
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	2 cut(s)	129, 463
MroNI	GCCGGC	1 cut(s)	421
MseI	TTAA	2 cut(s)	278, 504
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	2 cut(s)	415, 422
MspR9I	CCNGG	2 cut(s)	254, 415
MunI	CAATTG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	376
NaeI	GCCGGC	1 cut(s)	423
NciI	CCSGG	1 cut(s)	415
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	2 cut(s)	118, 230
NgoMIV	GCCGGC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	20, 383, 389
NlaIV	GGNNCC	3 cut(s)	74, 301, 413
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	383
PaeI	GCATGC	1 cut(s)	383
PctI	GAATGC	1 cut(s)	328
PdiI	GCCGGC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	411
PshBI	ATTAAT	1 cut(s)	504
PsiI	TTATAA	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	74, 301, 413
PspPI	GGNCC	2 cut(s)	73, 411
PspPPI	RGGWCCY	1 cut(s)	411
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	278, 504
Sau3AI	GATC	2 cut(s)	118, 230
Sau96I	GGNCC	2 cut(s)	73, 411
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	254, 415
SduI	GDGCHC	3 cut(s)	191, 304, 318
SetI	ASST	8 cut(s)	13, 30, 114, 191, 213, 258, 372, 455
SexAI	ACCWGGT	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	85
SinI	GGWCC	2 cut(s)	73, 411
SmiMI	CAYNNNNRTG	1 cut(s)	384
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	3 cut(s)	305, 322, 361
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	252, 413
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	229, 338
TasI	AATT	3 cut(s)	305, 322, 361
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	278, 504
Tru9I	TTAA	2 cut(s)	278, 504
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	141
TspGWI	ACGGA	2 cut(s)	169, 223
TspRI	CASTG	1 cut(s)	138
VpaK11BI	GGWCC	2 cut(s)	73, 411
VspI	ATTAAT	1 cut(s)	504
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.