Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001621.1

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Reverse (-)

54206 .. 56072

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001621.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atgggtttagcttcacatgggagaaaccttacatttcagattggtaatccaaaatcaaggcttttgattcgggtccactactacagttataaatcagagagtaaaaagcaagaggatgatgaaacagtgagggaaatctgtaccattctgaagcgaagtagagagtgggagtctgtgttgagctcatcagggtttcccaagaagctaaacccttatggggttcgatccgttcttcaacaacaccaccaggttggtgacctagaaagacttttaagtttctttgattggtcttgtgcccaattgggtgtgctcccaaatttgcattctttttcgattatggctgttgttttgtgtaattccaagctttttgggcatgcccatggtgtgttggagagaatagttaggacctggaagccggctttagaagttttggattgtgttgttaggagtgttgggatttcgccgagattggaatgttgtaattctctgttgaatgacttgttgaagggtaataggatgaggctgttctggaaagtgtatgatgggatgttagaggctaagattgagcgagatttttacacttatagtaatgtgatcaatgcacattgtaagtttggggatgttaggcaggtactaattgatggattgtgcagacagaagagatcagaagaagcaaaattggtattgaacgagatgtatgatctaggtttgaatcctgaccgcaccatgtacattgctttgattgatggattcttgaaagaaaataatgtggataaggccctcaggatcaaagaagagatgatggagaaggcaaattctcttttgaataagatgaatactatgggaattgaacctaatacccagacatataactatttaattgatgggtactgccgggagcaaaatgtaaacaaggcttatgcattacttaatgagatgaagcaaaggttcacgagttctaaccacaaagccaaaaaccaaaaacttgaaaatctttcttcaccaccaaagcccctagcccatgctagccaaagccaccaccccagcctaaccccgttctcgcccctgcgtacgcagctgcctacttacgtgcccgtgcacctgcagccttgcactgcagcccctgctgctgcccactcgcatgcccgtgcacctgctgcccacctgcttgcccgtgcgcctacagccttgcaccgctgccttactgctgcccctgcagccttgcagcacctctcggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

413

Amino Acids

46.74

Weight (kDa)

9.24

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AarI	CACCTGC	3 cut(s)	1110, 1162, 1173
Acc36I	ACCTGC	4 cut(s)	619, 1110, 1162, 1173
AciI	CCGC	2 cut(s)	721, 1195
AclWI	GGATC	2 cut(s)	219, 794
AcsI	RAATTY	2 cut(s)	316, 814
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	5 cut(s)	142, 633, 731, 890, 1072
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	9 cut(s)	236, 493, 505, 688, 712, 757, 826, 851, 989
AjnI	CCWGG	2 cut(s)	246, 407
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
AluBI	AGCT	5 cut(s)	11, 183, 205, 364, 1078
AluI	AGCT	5 cut(s)	11, 183, 205, 364, 1078
Alw21I	GWGCWC	4 cut(s)	185, 312, 1101, 1153
Alw44I	GTGCAC	2 cut(s)	1097, 1149
AlwI	GGATC	2 cut(s)	219, 794
AlwNI	CAGNNNCTG	1 cut(s)	1124
AoxI	GGCC	2 cut(s)	777, 1236
ApaLI	GTGCAC	2 cut(s)	1097, 1149
ApoI	RAATTY	2 cut(s)	316, 814
AspLEI	GCGC	1 cut(s)	1180
AspS9I	GGNCC	3 cut(s)	73, 405, 778
AsuC2I	CCSGG	1 cut(s)	896
AsuHPI	GGTGA	2 cut(s)	266, 993
AsuNHI	GCTAGC	1 cut(s)	1025
AvaII	GGWCC	2 cut(s)	73, 405
AxyI	CCTNAGG	1 cut(s)	782
BaeGI	GKGCMC	4 cut(s)	298, 1095, 1101, 1153
BanII	GRGCYC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	952
Bbv12I	GWGCWC	4 cut(s)	185, 312, 1101, 1153
BccI	CCATC	5 cut(s)	536, 635, 740, 796, 878
BciT130I	CCWGG	2 cut(s)	248, 409
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	896
BfaI	CTAG	5 cut(s)	260, 704, 1016, 1026, 1240
BfmI	CTRYAG	5 cut(s)	82, 1103, 1116, 1182, 1215
BfuAI	ACCTGC	4 cut(s)	619, 1110, 1162, 1173
Bme1390I	CCNGG	3 cut(s)	248, 409, 896
Bme18I	GGWCC	2 cut(s)	73, 405
BmgT120I	GGNCC	3 cut(s)	73, 405, 778
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	3 cut(s)	248, 409, 896
BmtI	GCTAGC	1 cut(s)	1029
BpuMI	CCSGG	1 cut(s)	896
BsaAI	YACGTR	1 cut(s)	1090
BsaJI	CCNNGG	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	415
Bse21I	CCTNAGG	1 cut(s)	782
Bse3DI	GCAATG	1 cut(s)	732
BseBI	CCWGG	2 cut(s)	248, 409
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	4 cut(s)	121, 522, 552, 625
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	1 cut(s)	796
BseSI	GKGCMC	4 cut(s)	298, 1095, 1101, 1153
BseYI	CCCAGC	1 cut(s)	1043
BsgI	GTGCAG	1 cut(s)	670
BshFI	GGCC	2 cut(s)	779, 1238
BsiHKAI	GWGCWC	4 cut(s)	185, 312, 1101, 1153
BsiSI	CCGG	2 cut(s)	416, 895
BsiWI	CGTACG	1 cut(s)	1070
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	779, 1238
Bsp1286I	GDGCHC	6 cut(s)	185, 298, 312, 1095, 1101, 1153
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	5 cut(s)	224, 594, 662, 700, 786
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	2 cut(s)	721, 1195
BspANI	GGCC	2 cut(s)	779, 1238
BspCNI	CTCAG	1 cut(s)	795
BspLI	GGNNCC	1 cut(s)	74
BspMAI	CTGCAG	3 cut(s)	1107, 1120, 1219
BspMI	ACCTGC	4 cut(s)	619, 1110, 1162, 1173
BspOI	GCTAGC	1 cut(s)	1029
BspPI	GGATC	2 cut(s)	219, 794
BsrDI	GCAATG	1 cut(s)	732
BsrFI	RCCGGY	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	729
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	5 cut(s)	224, 594, 662, 700, 786
BssSI	CACGAG	1 cut(s)	952
BssT1I	CCWWGG	1 cut(s)	379
Bst2BI	CACGAG	1 cut(s)	952
Bst2UI	CCWGG	2 cut(s)	248, 409
Bst4CI	ACNGT	2 cut(s)	86, 127
Bst6I	CTCTTC	2 cut(s)	653, 789
BstAPI	GCANNNNNTGC	2 cut(s)	1124, 1157
BstAUI	TGTACA	1 cut(s)	729
BstBAI	YACGTR	1 cut(s)	1090
BstC8I	GCNNGC	5 cut(s)	375, 417, 1027, 1143, 1170
BstDEI	CTNAG	2 cut(s)	558, 782
BstDSI	CCRYGG	1 cut(s)	379
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	4 cut(s)	121, 522, 552, 625
BstHHI	GCGC	1 cut(s)	1180
BstKTI	GATC	5 cut(s)	227, 597, 665, 703, 789
BstMBI	GATC	5 cut(s)	224, 594, 662, 700, 786
BstMWI	GCNNNNNNNGC	9 cut(s)	370, 1075, 1105, 1124, 1127, 1157, 1184, 1214, 1217
BstNI	CCWGG	2 cut(s)	248, 409
BstNSI	RCATGY	2 cut(s)	377, 1145
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	3 cut(s)	246, 407, 894
BstSFI	CTRYAG	5 cut(s)	82, 1103, 1116, 1182, 1215
BstSLI	GKGCMC	4 cut(s)	298, 1095, 1101, 1153
BstXI	CCANNNNNNTGG	1 cut(s)	251
Bsu36I	CCTNAGG	1 cut(s)	782
BsuRI	GGCC	2 cut(s)	779, 1238
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	4 cut(s)	121, 522, 552, 625
BtsI	GCAGTG	1 cut(s)	1113
BtsIMutI	CAGTG	2 cut(s)	132, 1113
BveI	ACCTGC	4 cut(s)	619, 1110, 1162, 1173
Cac8I	GCNNGC	5 cut(s)	375, 417, 1027, 1143, 1170
CaiI	CAGNNNCTG	1 cut(s)	1124
CfoI	GCGC	1 cut(s)	1180
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	73, 405, 778
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	5 cut(s)	141, 632, 730, 889, 1071
CviAII	CATG	6 cut(s)	17, 374, 380, 727, 1022, 1142
CviQI	GTAC	5 cut(s)	141, 632, 730, 889, 1071
DdeI	CTNAG	2 cut(s)	558, 782
DpnI	GATC	5 cut(s)	226, 596, 664, 702, 788
DpnII	GATC	5 cut(s)	224, 594, 662, 700, 786
Eam1104I	CTCTTC	2 cut(s)	653, 789
EarI	CTCTTC	2 cut(s)	653, 789
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	73, 405
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	170
Eco81I	CCTNAGG	1 cut(s)	782
Eco91I	GGTNACC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	183
EcoO109I	RGGNCCY	2 cut(s)	405, 778
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	246, 407
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	925
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	6 cut(s)	20, 377, 383, 730, 1025, 1145
FatI	CATG	6 cut(s)	16, 373, 379, 726, 1021, 1141
FbaI	TGATCA	1 cut(s)	594
FokI	GGATG	4 cut(s)	128, 529, 559, 632
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	5 cut(s)	260, 704, 1016, 1026, 1240
GlaI	GCGC	1 cut(s)	1179
GsaI	CCCAGC	1 cut(s)	1047
HaeIII	GGCC	2 cut(s)	779, 1238
HapII	CCGG	2 cut(s)	416, 895
HhaI	GCGC	1 cut(s)	1180
Hin1II	CATG	6 cut(s)	20, 377, 383, 730, 1025, 1145
Hin6I	GCGC	1 cut(s)	1178
HinP1I	GCGC	1 cut(s)	1178
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	4 cut(s)	67, 170, 712, 750
HpaII	CCGG	2 cut(s)	416, 895
HphI	GGTGA	2 cut(s)	266, 993
Hpy166II	GTNNAC	5 cut(s)	76, 910, 951, 1099, 1151
Hpy188I	TCNGA	4 cut(s)	39, 97, 150, 667
Hpy188III	TCNNGA	5 cut(s)	529, 716, 754, 784, 952
Hpy8I	GTNNAC	5 cut(s)	76, 910, 951, 1099, 1151
HpyAV	CCTTC	2 cut(s)	499, 802
HpyCH4III	ACNGT	2 cut(s)	86, 127
HpyCH4IV	ACGT	1 cut(s)	1089
HpyF10VI	GCNNNNNNNGC	9 cut(s)	370, 1075, 1105, 1124, 1127, 1157, 1184, 1214, 1217
HpyF3I	CTNAG	2 cut(s)	558, 782
HpySE526I	ACGT	1 cut(s)	1089
Hsp92II	CATG	6 cut(s)	20, 377, 383, 730, 1025, 1145
HspAI	GCGC	1 cut(s)	1178
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	5 cut(s)	224, 594, 662, 700, 786
LmnI	GCTCC	2 cut(s)	315, 898
MabI	ACCWGGT	1 cut(s)	246
MaeI	CTAG	5 cut(s)	260, 704, 1016, 1026, 1240
MaeII	ACGT	1 cut(s)	1089
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	5 cut(s)	226, 596, 664, 702, 788
MboI	GATC	5 cut(s)	224, 594, 662, 700, 786
MboII	GAAGA	5 cut(s)	224, 670, 680, 806, 990
MfeI	CAATTG	1 cut(s)	299
MhlI	GDGCHC	6 cut(s)	185, 298, 312, 1095, 1101, 1153
MluCI	AATT	9 cut(s)	299, 316, 355, 481, 636, 677, 814, 846, 879
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	6 cut(s)	106, 123, 513, 547, 791, 1241
Mph1103I	ATGCAT	1 cut(s)	925
MroNI	GCCGGC	1 cut(s)	415
MseI	TTAA	3 cut(s)	272, 878, 930
MslI	CAYNNNNRTG	3 cut(s)	378, 1140, 1146
MspA1I	CMGCKG	2 cut(s)	1078, 1197
MspI	CCGG	2 cut(s)	416, 895
MspR9I	CCNGG	3 cut(s)	248, 409, 896
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	2 cut(s)	248, 409
MwoI	GCNNNNNNNGC	9 cut(s)	370, 1075, 1105, 1124, 1127, 1157, 1184, 1214, 1217
NaeI	GCCGGC	1 cut(s)	417
NciI	CCSGG	1 cut(s)	896
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	5 cut(s)	224, 594, 662, 700, 786
NgoMIV	GCCGGC	1 cut(s)	415
NheI	GCTAGC	1 cut(s)	1025
NlaIII	CATG	6 cut(s)	20, 377, 383, 730, 1025, 1145
NlaIV	GGNNCC	1 cut(s)	74
NmeAIII	GCCGAG	2 cut(s)	489, 1214
NmuCI	GTSAC	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	925
NspI	RCATGY	2 cut(s)	377, 1145
PaeI	GCATGC	2 cut(s)	377, 1145
PaqCI	CACCTGC	3 cut(s)	1110, 1162, 1173
PctI	GAATGC	1 cut(s)	322
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	3 cut(s)	67, 712, 750
Pfl23II	CGTACG	1 cut(s)	1070
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	1090
PpuMI	RGGWCCY	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	246, 407
PspEI	GGTNACC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	1043
PspGI	CCWGG	2 cut(s)	246, 407
PspLI	CGTACG	1 cut(s)	1070
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	3 cut(s)	73, 405, 778
PspPPI	RGGWCCY	1 cut(s)	405
PstI	CTGCAG	3 cut(s)	1107, 1120, 1219
PstNI	CAGNNNCTG	1 cut(s)	1124
PvuII	CAGCTG	1 cut(s)	1078
RsaI	GTAC	5 cut(s)	142, 633, 731, 890, 1072
RsaNI	GTAC	5 cut(s)	141, 632, 730, 889, 1071
RseI	CAYNNNNRTG	3 cut(s)	378, 1140, 1146
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	272, 878, 930
Sau3AI	GATC	5 cut(s)	224, 594, 662, 700, 786
Sau96I	GGNCC	3 cut(s)	73, 405, 778
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	3 cut(s)	248, 409, 896
SduI	GDGCHC	6 cut(s)	185, 298, 312, 1095, 1101, 1153
SexAI	ACCWGGT	1 cut(s)	246
SfcI	CTRYAG	5 cut(s)	82, 1103, 1116, 1182, 1215
SinI	GGWCC	2 cut(s)	73, 405
SmiMI	CAYNNNNRTG	3 cut(s)	378, 1140, 1146
SphI	GCATGC	2 cut(s)	377, 1145
Sse9I	AATT	9 cut(s)	299, 316, 355, 481, 636, 677, 814, 846, 879
SsiI	CCGC	2 cut(s)	721, 1195
SspMI	CTAG	5 cut(s)	260, 704, 1016, 1026, 1240
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	3 cut(s)	246, 407, 894
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	86, 127
TaiI	ACGT	1 cut(s)	1092
TaqI	TCGA	2 cut(s)	223, 332
TasI	AATT	9 cut(s)	299, 316, 355, 481, 636, 677, 814, 846, 879
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	3 cut(s)	67, 712, 750
Tru1I	TTAA	3 cut(s)	272, 878, 930
Tru9I	TTAA	3 cut(s)	272, 878, 930
TscAI	CASTG	2 cut(s)	132, 1120
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	3 cut(s)	135, 848, 953
TspGWI	ACGGA	1 cut(s)	217
TspRI	CASTG	2 cut(s)	132, 1120
VneI	GTGCAC	2 cut(s)	1097, 1149
VpaK11BI	GGWCC	2 cut(s)	73, 405
XapI	RAATTY	2 cut(s)	316, 814
XceI	RCATGY	2 cut(s)	377, 1145
XspI	CTAG	5 cut(s)	260, 704, 1016, 1026, 1240
Zsp2I	ATGCAT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.