Rh4AG001800

BRCT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001276
Physical Location & Seq
Reverse (-)
291550 .. 298292
6743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG001800.1

Sequence Viewer

Length: 1245 bp
ATGGGTTTAGCTTCACATGGGAGAAACCTTGCATTTCAGATTGGTAATCCAAAATCAAGGCTTTTGATTCGGGTCCACTACTGCAGTTATAAATCAGAGAGTAAAAAGCAAGTGGATGATGAAACAGTGAGGGAAATCTGTACCATTCTGAAGCGAAGCAGAGAGTGGGAGTCCGTGTTGAGCTCATCAGGGTTTCCCAAGAAGCTAAACCCTTGTGTGGTTCGATCCGTTCTTCAACAACACCACCAGGGGATTTCGCCAAGATTGGAATGCTGTAATTCTCTGTTGAATGAGTTGTTGAAGGGTAATAGGATGAGGCTGTTCTGGAAAGTGTATGATGGGATGTTAGAGGCTAAGATTGAGCTGGATTTTTACACTTATAGCAATGTGATCAATGCACATTGTAAGTTTGGGGATGTTAGGCAGGGTAAGAAGCTACTGTTTGAGATGGTAGAGAAGGGCTGTAATCCGAATTTGAGTACCTTCAATGTCGTGATTGATGGATTGTGTAGAAGTAGGGCTGTTGATGAAGCCATTGAGTTGAAAAAATCGATGGTTGAGAAGGGATTGACACCTGATAGGTATACATATTCAGTACTAATTGATGGATTGTGCAGACAGAAGAGATCAGAAGAAGCAAAGTTGGTTAGTGAGATATTGGATTCAGAGTTATTAGGTGAAGGGTTGATACCTTCTCTGCAACATGCGCATGACATATTGTTGGTGGAGAGTCCTGAAATGGTGTCGTATAGAGCAACCACTTACGGTCAGTTGGTTGAGAGCACATTTTTGTGGAAGCTTCGTGATTTACGCTGTAATAAGGCAGAAGTTCGATCTAAGCTGCTAGATTGCGGTGGGTCTAATGTTGGTCTCTATTCCCCAAATTGCACTCACCTCATTGTGGATAGGATTGCCTATGACCATCCTGTGTGTGCTGCTGCTCGAAAGGACGGCAAAACGATTGTCACGGCTTTGTGGGTTCTTCATAGTTTTGATGTTGGACTGCCCCTTGATGCTGCTGCTATTATATACAGACCTCTCAAACATTTGAATGGTATTCTTGGTGCCAAGAATTTATTAATGTGCTTGACTGGATATCAAGGACAAGATAGAGATGACATTATGACAATGGTTGGTTTAATGGGTGCTCAGTTTTCTAAACCATTGGTGGCAAGCAAAGTCACTCATCTCATTTGCTATAAATTTGAAGCCTCGATTTCCCGGAACCCTTGTGTTGGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT PHD PTCB-BRCT

Protein Analysis

414

Amino Acids

46.46

Weight (kDa)

8.75

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 91 - 136 1.8e-08 PPR repeat family
PPR_long PF17177 92 - 201 9.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 112 - 167 2.4e-07 Pentatricopeptide repeat domain
PPR PF01535 125 - 155 1.6e-06 PPR repeat
PPR_2 PF13041 126 - 171 7.4e-13 PPR repeat family
PPR_1 PF12854 153 - 186 8.8e-10 PPR repeat
PPR_2 PF13041 157 - 206 2e-17 PPR repeat family
PPR PF01535 160 - 190 4.1e-06 PPR repeat
PPR_1 PF12854 188 - 213 3.8e-07 PPR repeat
PTCB-BRCT PF12738 359 - 403 1.2e-09 twin BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
Acc16I TGCGCA 1 cut(s) 708
AccB1I GGYRCC 1 cut(s) 1064
AccI GTMKAC 1 cut(s) 584
AciI CCGC 1 cut(s) 852
AclWI GGATC 1 cut(s) 219
AcsI RAATTY 3 cut(s) 472, 1072, 1202
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 3 cut(s) 142, 481, 597
AfiI CCNNNNNNNGG 3 cut(s) 217, 901, 1235
AgsI TTSAA 7 cut(s) 236, 289, 301, 487, 544, 1051, 1208
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 7 cut(s) 11, 183, 205, 364, 436, 799, 841
AluI AGCT 7 cut(s) 11, 183, 205, 364, 436, 799, 841
Alw21I GWGCWC 3 cut(s) 185, 785, 1150
Alw26I GTCTC 1 cut(s) 875
AlwI GGATC 1 cut(s) 219
ApeKI GCWGC 5 cut(s) 841, 935, 938, 1016, 1019
ApoI RAATTY 3 cut(s) 472, 1072, 1202
ArsI GACNNNNNNTTYG 2 cut(s) 948, 980
AseI ATTAAT 1 cut(s) 1079
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 1222
AsuHPI GGTGA 2 cut(s) 689, 884
AvaII GGWCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 1064
BanII GRGCYC 1 cut(s) 185
BarI GAAGNNNNNNTAC 2 cut(s) 672, 704
Bbv12I GWGCWC 3 cut(s) 185, 785, 1150
BbvI GCAGC 5 cut(s) 828, 922, 925, 1003, 1006
BccI CCATC 6 cut(s) 332, 442, 494, 547, 599, 930
BceAI ACGGC 2 cut(s) 967, 984
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 1 cut(s) 390
BcnI CCSGG 1 cut(s) 1222
BcoDI GTCTC 1 cut(s) 875
BfaI CTAG 1 cut(s) 845
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 5 cut(s) 842, 936, 939, 1017, 1020
BlsI GCNGC 5 cut(s) 843, 937, 940, 1018, 1021
BmcAI AGTACT 1 cut(s) 597
Bme1390I CCNGG 2 cut(s) 248, 1222
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 3 cut(s) 74, 1066, 1226
BmrFI CCNGG 2 cut(s) 248, 1222
BmsI GCATC 1 cut(s) 1003
BpuMI CCSGG 1 cut(s) 1222
Bsa29I ATCGAT 1 cut(s) 551
BsaI GGTCTC 1 cut(s) 875
BsaJI CCNNGG 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 901, 1235
Bse1I ACTGG 1 cut(s) 1096
Bse3DI GCAATG 1 cut(s) 391
BseBI CCWGG 1 cut(s) 248
BseCI ATCGAT 1 cut(s) 551
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 5 cut(s) 121, 318, 348, 421, 922
BseLI CCNNNNNNNGG 3 cut(s) 217, 901, 1235
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 1163
BseNI ACTGG 1 cut(s) 1096
BseXI GCAGC 5 cut(s) 828, 922, 925, 1003, 1006
BsgI GTGCAG 1 cut(s) 634
BshNI GGYRCC 1 cut(s) 1064
BshVI ATCGAT 1 cut(s) 551
BsiHKAI GWGCWC 3 cut(s) 185, 785, 1150
BsiSI CCGG 1 cut(s) 1222
BslI CCNNNNNNNGG 3 cut(s) 217, 901, 1235
BsmAI GTCTC 1 cut(s) 875
BsmI GAATGC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 875
Bsp1286I GDGCHC 3 cut(s) 185, 785, 1150
Bsp143I GATC 4 cut(s) 224, 390, 626, 833
BspACI CCGC 1 cut(s) 852
BspCNI CTCAG 1 cut(s) 1162
BspDI ATCGAT 1 cut(s) 551
BspLI GGNNCC 3 cut(s) 74, 1066, 1226
BspMAI CTGCAG 1 cut(s) 86
BspPI GGATC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 1064
BspTNI GGTCTC 1 cut(s) 875
BsrDI GCAATG 1 cut(s) 391
BsrI ACTGG 1 cut(s) 1096
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 4 cut(s) 224, 390, 626, 833
BssNAI GTATAC 1 cut(s) 585
Bst1107I GTATAC 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 127, 441, 767
Bst6I CTCTTC 1 cut(s) 617
BstC8I GCNNGC 1 cut(s) 1174
BstDEI CTNAG 3 cut(s) 354, 837, 1149
BstF5I GGATG 5 cut(s) 121, 318, 348, 421, 922
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 4 cut(s) 227, 393, 629, 836
BstMAI GTCTC 1 cut(s) 875
BstMBI GATC 4 cut(s) 224, 390, 626, 833
BstMWI GCNNNNNNNGC 1 cut(s) 706
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 2 cut(s) 246, 1220
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 5 cut(s) 828, 922, 925, 1003, 1006
BstZ17I GTATAC 1 cut(s) 585
Bsu15I ATCGAT 1 cut(s) 551
BsuTUI ATCGAT 1 cut(s) 551
BtsCI GGATG 5 cut(s) 121, 318, 348, 421, 922
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 1174
CfoI GCGC 1 cut(s) 709
Cfr13I GGNCC 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 551
Csp6I GTAC 3 cut(s) 141, 480, 596
CviAII CATG 3 cut(s) 17, 704, 710
CviQI GTAC 3 cut(s) 141, 480, 596
DdeI CTNAG 3 cut(s) 354, 837, 1149
DpnI GATC 4 cut(s) 226, 392, 628, 835
DpnII GATC 4 cut(s) 224, 390, 626, 833
Eam1104I CTCTTC 1 cut(s) 617
EarI CTCTTC 1 cut(s) 617
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 875
Eco32I GATATC 1 cut(s) 1097
Eco47I GGWCC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 246
EcoRV GATATC 1 cut(s) 1097
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 3 cut(s) 20, 707, 713
FatI CATG 3 cut(s) 16, 703, 709
FbaI TGATCA 1 cut(s) 390
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 5 cut(s) 842, 936, 939, 1017, 1020
FokI GGATG 5 cut(s) 128, 325, 355, 428, 909
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 5 cut(s) 842, 936, 939, 1017, 1020
FspAI RTGCGCAY 1 cut(s) 708
FspBI CTAG 1 cut(s) 845
FspI TGCGCA 1 cut(s) 708
GlaI GCGC 1 cut(s) 708
GluI GCNGC 5 cut(s) 842, 936, 939, 1017, 1020
HapII CCGG 1 cut(s) 1222
HhaI GCGC 1 cut(s) 709
Hin1II CATG 3 cut(s) 20, 707, 713
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 4 cut(s) 67, 170, 662, 730
HpaII CCGG 1 cut(s) 1222
HphI GGTGA 2 cut(s) 689, 884
Hpy166II GTNNAC 2 cut(s) 76, 585
Hpy188I TCNGA 6 cut(s) 39, 97, 150, 471, 631, 667
Hpy188III TCNNGA 4 cut(s) 325, 493, 734, 803
Hpy8I GTNNAC 2 cut(s) 76, 585
HpyAV CCTTC 6 cut(s) 295, 451, 493, 556, 674, 702
HpyCH4III ACNGT 3 cut(s) 127, 441, 767
HpyCH4V TGCA 6 cut(s) 32, 84, 398, 615, 700, 888
HpyF10VI GCNNNNNNNGC 1 cut(s) 706
HpyF3I CTNAG 3 cut(s) 354, 837, 1149
Hsp92II CATG 3 cut(s) 20, 707, 713
HspAI GCGC 1 cut(s) 707
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 4 cut(s) 224, 390, 626, 833
Lsp1109I GCAGC 5 cut(s) 828, 922, 925, 1003, 1006
LweI GCATC 1 cut(s) 1003
MaeI CTAG 1 cut(s) 845
MaeIII GTNAC 2 cut(s) 964, 1180
MalI GATC 4 cut(s) 226, 392, 628, 835
MboI GATC 4 cut(s) 224, 390, 626, 833
MboII GAAGA 4 cut(s) 224, 634, 644, 974
MhlI GDGCHC 3 cut(s) 185, 785, 1150
MluCI AATT 6 cut(s) 277, 472, 600, 883, 1072, 1202
MlyI GAGTC 2 cut(s) 179, 739
MmeI TCCRAC 2 cut(s) 979, 1216
MnlI CCTC 6 cut(s) 123, 309, 343, 905, 1047, 1222
MseI TTAA 2 cut(s) 1079, 1139
MslI CAYNNNNRTG 3 cut(s) 708, 790, 1050
MspI CCGG 1 cut(s) 1222
MspR9I CCNGG 2 cut(s) 248, 1222
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 706
NciI CCSGG 1 cut(s) 1222
NdeII GATC 4 cut(s) 224, 390, 626, 833
NlaIII CATG 3 cut(s) 20, 707, 713
NlaIV GGNNCC 3 cut(s) 74, 1066, 1226
NmuCI GTSAC 2 cut(s) 964, 1180
NsbI TGCGCA 1 cut(s) 708
NspI RCATGY 1 cut(s) 707
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 67, 662
PfoI TCCNGGA 1 cut(s) 1220
PkrI GCNGC 5 cut(s) 843, 937, 940, 1018, 1021
PleI GAGTC 2 cut(s) 178, 738
PpsI GAGTC 2 cut(s) 178, 738
PshBI ATTAAT 1 cut(s) 1079
PsiI TTATAA 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 3 cut(s) 74, 1066, 1226
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 86
RsaI GTAC 3 cut(s) 142, 481, 597
RsaNI GTAC 3 cut(s) 141, 480, 596
RseI CAYNNNNRTG 3 cut(s) 708, 790, 1050
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 1079, 1139
SatI GCNGC 5 cut(s) 842, 936, 939, 1017, 1020
Sau3AI GATC 4 cut(s) 224, 390, 626, 833
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 597
SchI GAGTC 2 cut(s) 179, 739
ScrFI CCNGG 2 cut(s) 248, 1222
SduI GDGCHC 3 cut(s) 185, 785, 1150
SfaNI GCATC 1 cut(s) 1003
SfcI CTRYAG 1 cut(s) 82
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 3 cut(s) 708, 790, 1050
Sse9I AATT 6 cut(s) 277, 472, 600, 883, 1072, 1202
SsiI CCGC 1 cut(s) 852
SspMI CTAG 1 cut(s) 845
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 2 cut(s) 246, 1220
TaaI ACNGT 3 cut(s) 127, 441, 767
TaqI TCGA 5 cut(s) 223, 551, 832, 943, 1214
TasI AATT 6 cut(s) 277, 472, 600, 883, 1072, 1202
TatI WGTACW 1 cut(s) 595
TfiI GAWTC 2 cut(s) 67, 662
Tru1I TTAA 2 cut(s) 1079, 1139
Tru9I TTAA 2 cut(s) 1079, 1139
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 2 cut(s) 964, 1180
TseI GCWGC 5 cut(s) 841, 935, 938, 1016, 1019
Tsp45I GTSAC 2 cut(s) 964, 1180
TspDTI ATGAA 3 cut(s) 135, 543, 974
TspGWI ACGGA 2 cut(s) 163, 217
TspRI CASTG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 73
VspI ATTAAT 1 cut(s) 1079
XapI RAATTY 3 cut(s) 472, 1072, 1202
XceI RCATGY 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 584
XspI CTAG 1 cut(s) 845
ZrmI AGTACT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.