Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Reverse (-)

17477755 .. 17480907

Gene Structure 3153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3153 bp

ATGACTTTGTGTTGCTCTCATGCCTCCATTGCCATAGCTGAGTCGCTCACAAGTTGGGGTATCAGGAAAAAAATGGGGTTATTTTCTCATGGAAATCTCTTTGCATTTCATCTGAGCAATCGAATTGGTATTGCAAAAGCAAGACTTGTGATTCATATCAAATACTGCACCACCAACTCGCAGCAATCAGAGACGTTCAAACAGGACGATGACGAAACAGTGAGAGAAATCTCCACCATCCTCAGAAACCACAGCGACTGGCACTTGGTTCTCAACTCCTCGCACCTCCCCAGGAAGCTGAACCCACATGTGGTCCGAGCCGTTCTGCAGCAGAACCACCAGGTTGGTGACCCAAAACGCCTCCTCAGTTTCTTCCTATGGACCGATACCCACCTGGGTCTTCCCCAAAATTTGCATTCCTTTTCGATTCTTGCTGTTGTTCTGTGCAATTCCAAGATGTTTGAGCAGGCTAATGCTGTGTTAGATAGAATGGTTAAGACCCGAAAACCGGTTTTTGAAGTTTTGGATTCTGTTGTTAGTTGTTTTAGAGATGGTGAGTGTGATGGATCGGATAAGATTGTTTTTGAGATTCTGATTAGAACTTTTATGGCGGCGGGGCGGTTGAACGAGGCTGCTGATGTTTTTCTGGGACTTAGGAAAGTTGGGATTCTGCCAAGATTGGATTGCTGCAATTTTCTGTTGAATGATTTGTTGAAGTGTAATAAAATGGAGTTGTTTTGGAAGGTGTATGATGGGATGTTAGAGGCGAAAATGAAACCCGATTTTTACACTCATTACAATGTGATCCATGCCCATTGTAGGGCAGGGAATGCCGGGCAGGGAAAGAGGATTCTGTTTGAGATGGAGGAGAAGGGTGGTAATCCAGATTTAAGTACCTATAATGTGGTGATTGGTGGTTTGTGTAGAGCTGGGGATGTCGATGAAGCCTTAGCGGTAAAGAAGTCTATGGTTGAGAAGGGATTGGTCCCGGATAGGTATACTTATTCGGCACTTGTTGATGGGTTATGCAGACAGAAGAGATCAACAGAAGCAAAATTGATGTTGAAATACATGTATGATAAAGGTTTGAGTCCTGACAACACCTGCTACGCTGCCTTGATTGATGGGTTGATGAAAGAAGGTTACTTGGAAGAGGCTCTGAGGATCAAAGATGAGACAATTGTTCGTGGCTTTAAGTTGTGCGATTCCACATGTAATGCAATTTTTGCTGGGATGTCTAAAATTGGTAAGATGGAGAAGGCAGAAGCTCTCCTGAATGAGATGAATGTTATGGGCACTAGACCTAATGCCCATACATACAAGTTTTTAATTGATGGGTATTGTCGAGAGCAAAATATGGTCAAGGCTTGTGAGTTACTTAACGAGATGAAGAAGAGGAACTTTGCACCCAATGTGTACACTTATGGAGCTATAATCAATGGCCTAAGCCGGTGTGGAGATATGCAAGGGGCTAATCAACTTTTGAAGGAAATGACTGGCAGAGGTTTGAGACCAGGTGCTGTTATCTACACAACTGTAATTAGAGGTCATGTCCAGGAAGGAAAACTTGGAGAGGCAATAAAAGTACTAAAAGGAATGACGGAAAAGGGGGTCATGCCTGATGCCTTTTGCTACAATTCTCTTATAATTGGCCTCTGTAAAGCCAGGAAAATGGACGAAGCCAGGACTTACTTCGTGGAAATGGTTGAGAGAGGATTAAAGCCCAATGCGTATACTTACGGGGCTTTTATTCATGGGTACTGTAAGGAGGGGAAAATGCAACTTGCGAATACGTATTTCCAGGAGATGTTGAGTTGCGGTATAGCTCCTAATGATGTTATCTATACAGCCCTGATTGAAGGGCACTGCAAAGAGGGTAACTTAACGGAAGTATATTCTACGTTTAGGTGTATGCTTGGACGAGGGGTGCTCCCAGATATCAAAACTTATAGTGTCATTATTCATGGTCTCTCAAAGAATGGAAAAATTCAAGAAGCAATGGGGATTTTCTCCGAGCTCCTTGGCAAGGATCTGGTTCCAGATGTTTTTACTTACAGCTCTCTCATATCTGGCCTTTGTAAGCAGGGAAATTTGGACAAGGCTTTCGAACTTCTTGAACAGATGTGCCGGAGAGGCGTTGATCCAAACATTGTTACTTATAATGCCTTGATTAATGGATTGTGTAAGTCAGGTGACACTGATAGAGCCAGAGAACTATTTGATGGAATCTCCAGAAAGGGTTTGTCTCCTAATGCTGTGACTTATGCTACAATGATGGATGGATATAGCAAATCCGGAAAATTAACCGAGGCATTTCAGTTATTAGATGAGATGCTTCTACATGGGATCCCTACAGATAGCTTCATCTACTGCATCCTCATTGATGGGTGCTGCAAGGCACGTGACCTAGAGAAGGCCCTGTCTTTATTTCGGGATATGGTGGGGAAGGGCATTGCAACCACTTCTCCTTTCAATGCATTGATTGATGGCTTCTGCAAATTGGGGAGGATGATGGAAGCTAAACAGTTGTTGGAAGATATGGTGGATAAGCATGTGACACCAGATCATGTCACCTACACGATTCTGATTGTTTCCCTCTGCAAAGAGGGATTGATGAAAGAATCAGAACAGCTCTTTCTGCAAATGCAGAAAAGGAATATGACGCCAGATATTTTATTGTATGCTTCACTTTTACACGGATACAATAGCACGGGAAGCAGATTTAAGATGTTTGCTCTTTTTGAGGAGATGGTGGCGAGGGGACTCAAGCCTAATGAAGTTACATATTGTATGATGGTTGATGCTTATTGCAAAGAGGGTGATTTGGTAAAATGTTTAAGGCTGCTGGATGAAACTTTGGTCAATGGTGCAATCTCGAACAGTGTAGTGGTTGATGCACTGACAGGTACACTATTCCAGAGGGAAGAATTTTCCAAGGCAATGAAGTCACTTGATGAAATGGGAGAACAAGGATTTTTGCTCAGTCTTGCTACATGCAGCACATTAGTTCGCGGATTTTACAAATTAGGGAATGTGGACAAAGCAGCAAGGATTTTTGAGAGCATGCTTAGGTTTGGATGGGTTTCACAGTCCACCAGGTTAGATGACTTAATTCATGAGGACCGAAGTGAGGCTAGCTCCGGAATATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

1051

Amino Acids

117.47

Weight (kDa)

7.88

Isoelectric Point (pI)

27.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	229 - 274	7.2e-06	PPR repeat family
PPR_long	PF17177	244 - 339	5.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	268 - 309	3.9e-07	PPR repeat family
PPR_1	PF12854	291 - 324	8.2e-10	PPR repeat
PPR_2	PF13041	295 - 344	3.2e-16	PPR repeat family
PPR	PF01535	298 - 328	3.1e-07	PPR repeat
PPR_1	PF12854	326 - 358	4e-07	PPR repeat
PPR_2	PF13041	338 - 379	2.7e-06	PPR repeat family
PPR_2	PF13041	403 - 449	6.1e-13	PPR repeat family
PPR_3	PF13812	424 - 480	7.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	432 - 464	9.8e-09	PPR repeat
PPR	PF01535	439 - 468	4.3e-06	PPR repeat
PPR_2	PF13041	443 - 483	3.3e-14	PPR repeat family
PPR_long	PF17177	449 - 585	4.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	459 - 505	2.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	467 - 499	6.1e-07	PPR repeat
PPR_long	PF17177	483 - 633	1.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	494 - 553	3e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	505 - 554	2.4e-13	PPR repeat family
PPR_1	PF12854	536 - 569	1.5e-08	PPR repeat
PPR_2	PF13041	540 - 589	1.6e-15	PPR repeat family
PPR	PF01535	544 - 573	1.5e-07	PPR repeat
PPR_3	PF13812	567 - 620	9.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	571 - 603	8.3e-08	PPR repeat
PPR	PF01535	578 - 608	3.1e-06	PPR repeat
PPR_2	PF13041	579 - 613	2.4e-06	PPR repeat family
PPR_long	PF17177	597 - 708	1.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	610 - 659	1.1e-12	PPR repeat family
PPR_1	PF12854	641 - 672	6.8e-06	PPR repeat
PPR_2	PF13041	649 - 694	1.6e-12	PPR repeat family
PPR_3	PF13812	669 - 725	3e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	676 - 708	2.5e-15	PPR repeat
PPR_2	PF13041	680 - 729	7e-21	PPR repeat family
PPR	PF01535	683 - 713	1.9e-09	PPR repeat
PPR_long	PF17177	696 - 784	2.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	704 - 762	6.6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	711 - 741	2.1e-12	PPR repeat
PPR_2	PF13041	715 - 764	1.7e-16	PPR repeat family
PPR	PF01535	718 - 748	1.3e-07	PPR repeat
PPR_1	PF12854	746 - 778	1.2e-10	PPR repeat
PPR_2	PF13041	751 - 799	5.5e-14	PPR repeat family
PPR	PF01535	753 - 783	1.9e-07	PPR repeat
PPR_1	PF12854	782 - 814	1.6e-07	PPR repeat
PPR_2	PF13041	786 - 819	1.1e-06	PPR repeat family
PPR	PF01535	789 - 818	3.4e-08	PPR repeat
PPR_long	PF17177	793 - 951	5.8e-10	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	824 - 850	1.9e-06	PPR repeat
PPR_1	PF12854	824 - 848	1.7e-07	PPR repeat
PPR_2	PF13041	824 - 868	1.8e-14	PPR repeat family
PPR_1	PF12854	851 - 882	1.1e-08	PPR repeat
PPR	PF01535	857 - 886	2.3e-06	PPR repeat
PPR_3	PF13812	878 - 938	4.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	889 - 938	3.1e-10	PPR repeat family
PPR_1	PF12854	920 - 951	7.7e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1646, 2160
AarI	CACCTGC	1 cut(s)	1112
Acc36I	ACCTGC	1 cut(s)	1112
AccI	GTMKAC	2 cut(s)	998, 1733
AccII	CGCG	1 cut(s)	3012
AccIII	TCCGGA	2 cut(s)	2294, 3140
AciI	CCGC	6 cut(s)	611, 614, 619, 953, 1818, 3012
AclWI	GGATC	7 cut(s)	574, 799, 1172, 2037, 2135, 2341, 2354
AcsI	RAATTY	4 cut(s)	409, 1986, 2089, 2927
AcvI	CACGTG	1 cut(s)	2402
AcyI	GRCGYC	1 cut(s)	2663
AfaI	GTAC	5 cut(s)	895, 1418, 1587, 1760, 2908
AfiI	CCNNNNNNNGG	7 cut(s)	310, 508, 819, 820, 2026, 2413, 3130
AflIII	ACRYGT	3 cut(s)	307, 1071, 1211
AgeI	ACCGGT	1 cut(s)	508
AjnI	CCWGG	9 cut(s)	290, 339, 393, 1513, 1554, 1664, 1682, 1800, 3095
AjuI	GAANNNNNNNTTGG	2 cut(s)	1551, 1583
Alw21I	GWGCWC	2 cut(s)	1932, 2019
Alw26I	GTCTC	5 cut(s)	185, 1169, 1504, 1973, 2250
AlwI	GGATC	7 cut(s)	574, 799, 1172, 2037, 2135, 2341, 2354
AlwNI	CAGNNNCTG	2 cut(s)	258, 1520
Aor13HI	TCCGGA	2 cut(s)	2294, 3140
AoxI	GGCC	4 cut(s)	1441, 1651, 2071, 2415
ApeKI	GCWGC	9 cut(s)	181, 328, 632, 687, 1112, 2391, 2842, 2997, 3044
ApoI	RAATTY	4 cut(s)	409, 1986, 2089, 2927
ArsI	GACNNNNNNTTYG	2 cut(s)	2087, 2119
AseI	ATTAAT	1 cut(s)	2172
AsiGI	ACCGGT	1 cut(s)	508
AspS9I	GGNCC	5 cut(s)	313, 381, 985, 2416, 3121
AsuC2I	CCSGG	2 cut(s)	835, 989
AsuHPI	GGTGA	6 cut(s)	359, 566, 919, 2204, 2563, 2831
AsuII	TTCGAA	1 cut(s)	2106
AsuNHI	GCTAGC	1 cut(s)	3134
AvaII	GGWCC	4 cut(s)	313, 381, 985, 3121
BaeGI	GKGCMC	2 cut(s)	1298, 1866
BamHI	GGATCC	1 cut(s)	2346
BanII	GRGCYC	1 cut(s)	2019
BbrPI	CACGTG	1 cut(s)	2402
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	2 cut(s)	1932, 2019
BbvI	GCAGC	9 cut(s)	193, 340, 619, 674, 1099, 2378, 2829, 3009, 3056
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	9 cut(s)	292, 341, 395, 1515, 1556, 1666, 1684, 1802, 3097
BciVI	GTATCC	1 cut(s)	2693
BcnI	CCSGG	2 cut(s)	835, 989
BcoDI	GTCTC	5 cut(s)	185, 1169, 1504, 1973, 2250
BfaI	CTAG	3 cut(s)	1299, 2408, 3135
BfmI	CTRYAG	2 cut(s)	326, 2352
BfuAI	ACCTGC	1 cut(s)	1112
BfuI	GTATCC	1 cut(s)	2693
BglI	GCCNNNNNGGC	1 cut(s)	2133
BmcAI	AGTACT	1 cut(s)	1587
Bme18I	GGWCC	4 cut(s)	313, 381, 985, 3121
BmgT120I	GGNCC	5 cut(s)	313, 381, 985, 2416, 3121
BmiI	GGNNCC	3 cut(s)	987, 2037, 2348
BmsI	GCATC	5 cut(s)	1612, 2322, 2382, 2791, 2884
BmtI	GCTAGC	1 cut(s)	3138
BpiI	GAAGAC	1 cut(s)	392
BplI	GAGNNNNNCTC	3 cut(s)	1914, 1946, 3122
BpmI	CTGGAG	1 cut(s)	2215
Bpu10I	CCTNAGC	3 cut(s)	949, 1445, 3068
Bpu14I	TTCGAA	1 cut(s)	2106
BpuEI	CTTGAG	1 cut(s)	2750
BpuMI	CCSGG	2 cut(s)	835, 989
BsaAI	YACGTR	2 cut(s)	1794, 2402
BsaBI	GATNNNNATC	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	2663
BsaI	GGTCTC	2 cut(s)	1504, 1973
BsaJI	CCNNGG	5 cut(s)	290, 394, 2020, 2307, 2934
BsaWI	WCCGGW	3 cut(s)	508, 2294, 3140
BsaXI	ACNNNNNCTCC	2 cut(s)	2449, 2479
Bsc4I	CCNNNNNNNGG	7 cut(s)	310, 508, 819, 820, 2026, 2413, 3130
Bse118I	RCCGGY	2 cut(s)	508, 1449
Bse1I	ACTGG	2 cut(s)	263, 1501
Bse3DI	GCAATG	4 cut(s)	27, 2004, 2451, 2946
Bse8I	GATNNNNATC	1 cut(s)	155
BseAI	TCCGGA	2 cut(s)	2294, 3140
BseBI	CCWGG	9 cut(s)	292, 341, 395, 1515, 1556, 1666, 1684, 1802, 3097
BseDI	CCNNGG	5 cut(s)	290, 394, 2020, 2307, 2934
BseGI	GGATG	9 cut(s)	237, 762, 940, 1239, 2284, 2373, 2514, 2854, 3083
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	7 cut(s)	310, 508, 819, 820, 2026, 2413, 3130
BseMI	GCAATG	4 cut(s)	27, 2004, 2451, 2946
BseMII	CTCAG	6 cut(s)	30, 104, 256, 379, 1151, 2995
BseNI	ACTGG	2 cut(s)	263, 1501
BseRI	GAGGAG	4 cut(s)	268, 353, 881, 2759
BseSI	GKGCMC	2 cut(s)	1298, 1866
BseXI	GCAGC	9 cut(s)	193, 340, 619, 674, 1099, 2378, 2829, 3009, 3056
BseYI	CCCAGC	2 cut(s)	929, 1229
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	3012
BshFI	GGCC	4 cut(s)	1443, 1653, 2073, 2417
BshTI	ACCGGT	1 cut(s)	508
BsiHKAI	GWGCWC	2 cut(s)	1932, 2019
BsiSI	CCGG	7 cut(s)	509, 834, 989, 1450, 2128, 2295, 3141
BslFI	GGGAC	3 cut(s)	663, 971, 2775
BslI	CCNNNNNNNGG	7 cut(s)	310, 508, 819, 820, 2026, 2413, 3130
BsmAI	GTCTC	5 cut(s)	185, 1169, 1504, 1973, 2250
BsmBI	CGTCTC	1 cut(s)	185
BsmFI	GGGAC	3 cut(s)	663, 971, 2775
BsmI	GAATGC	2 cut(s)	415, 835
BsnI	GGCC	4 cut(s)	1443, 1653, 2073, 2417
Bso31I	GGTCTC	2 cut(s)	1504, 1973
Bsp119I	TTCGAA	1 cut(s)	2106
Bsp1286I	GDGCHC	4 cut(s)	1298, 1866, 1932, 2019
Bsp13I	TCCGGA	2 cut(s)	2294, 3140
Bsp1407I	TGTACA	1 cut(s)	1416
Bsp143I	GATC	8 cut(s)	566, 804, 1040, 1164, 2029, 2140, 2346, 2563
BspACI	CCGC	6 cut(s)	611, 614, 619, 953, 1818, 3012
BspANI	GGCC	4 cut(s)	1443, 1653, 2073, 2417
BspCNI	CTCAG	6 cut(s)	31, 105, 255, 378, 1152, 2994
BspEI	TCCGGA	2 cut(s)	2294, 3140
BspFNI	CGCG	1 cut(s)	3012
BspHI	TCATGA	1 cut(s)	3115
BspLI	GGNNCC	3 cut(s)	987, 2037, 2348
BspMAI	CTGCAG	1 cut(s)	330
BspMI	ACCTGC	1 cut(s)	1112
BspOI	GCTAGC	1 cut(s)	3138
BspPI	GGATC	7 cut(s)	574, 799, 1172, 2037, 2135, 2341, 2354
BspT104I	TTCGAA	1 cut(s)	2106
BspTNI	GGTCTC	2 cut(s)	1504, 1973
BsrDI	GCAATG	4 cut(s)	27, 2004, 2451, 2946
BsrFI	RCCGGY	2 cut(s)	508, 1449
BsrGI	TGTACA	1 cut(s)	1416
BsrI	ACTGG	2 cut(s)	263, 1501
BssAI	RCCGGY	2 cut(s)	508, 1449
BssECI	CCNNGG	5 cut(s)	290, 394, 2020, 2307, 2934
BssMI	GATC	8 cut(s)	566, 804, 1040, 1164, 2029, 2140, 2346, 2563
BssNAI	GTATAC	2 cut(s)	999, 1734
BssNI	GRCGYC	1 cut(s)	2663
BssT1I	CCWWGG	2 cut(s)	2020, 2934
Bst1107I	GTATAC	2 cut(s)	999, 1734
Bst2UI	CCWGG	9 cut(s)	292, 341, 395, 1515, 1556, 1666, 1684, 1802, 3097
Bst4CI	ACNGT	6 cut(s)	220, 1537, 1763, 2526, 2882, 3090
Bst6I	CTCTTC	3 cut(s)	1031, 1146, 1388
BstACI	GRCGYC	1 cut(s)	2663
BstAPI	GCANNNNNTGC	2 cut(s)	830, 1226
BstAUI	TGTACA	1 cut(s)	1416
BstBAI	YACGTR	2 cut(s)	1794, 2402
BstBI	TTCGAA	1 cut(s)	2106
BstC8I	GCNNGC	3 cut(s)	468, 3065, 3136
BstEII	GGTNACC	1 cut(s)	347
BstENI	CCTNNNNNAGG	2 cut(s)	2024, 2411
BstF5I	GGATG	9 cut(s)	237, 762, 940, 1239, 2284, 2373, 2514, 2854, 3083
BstFNI	CGCG	1 cut(s)	3012
BstKTI	GATC	8 cut(s)	569, 807, 1043, 1167, 2032, 2143, 2349, 2566
BstMAI	GTCTC	5 cut(s)	185, 1169, 1504, 1973, 2250
BstMBI	GATC	8 cut(s)	566, 804, 1040, 1164, 2029, 2140, 2346, 2563
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 830, 1226, 2133, 2638, 2715
BstNI	CCWGG	9 cut(s)	292, 341, 395, 1515, 1556, 1666, 1684, 1802, 3097
BstNSI	RCATGY	6 cut(s)	311, 1075, 1215, 2555, 2997, 3067
BstPI	GGTNACC	1 cut(s)	347
BstSFI	CTRYAG	2 cut(s)	326, 2352
BstSLI	GKGCMC	2 cut(s)	1298, 1866
BstSNI	TACGTA	1 cut(s)	1794
BstUI	CGCG	1 cut(s)	3012
BstV1I	GCAGC	9 cut(s)	193, 340, 619, 674, 1099, 2378, 2829, 3009, 3056
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	2 cut(s)	2029, 2346
BstXI	CCANNNNNNTGG	2 cut(s)	344, 1672
BstYI	RGATCY	2 cut(s)	2029, 2346
BstZ17I	GTATAC	2 cut(s)	999, 1734
BsuI	GTATCC	1 cut(s)	2693
BsuRI	GGCC	4 cut(s)	1443, 1653, 2073, 2417
BtsCI	GGATG	9 cut(s)	237, 762, 940, 1239, 2284, 2373, 2514, 2854, 3083
BtsI	GCAGTG	1 cut(s)	1864
BtsIMutI	CAGTG	5 cut(s)	225, 1864, 2196, 2887, 2897
BveI	ACCTGC	1 cut(s)	1112
Cac8I	GCNNGC	3 cut(s)	468, 3065, 3136
CaiI	CAGNNNCTG	2 cut(s)	258, 1520
CciI	TCATGA	1 cut(s)	3115
Cfr10I	RCCGGY	2 cut(s)	508, 1449
Cfr13I	GGNCC	5 cut(s)	313, 381, 985, 2416, 3121
CseI	GACGC	1 cut(s)	2671
CsiI	ACCWGGT	3 cut(s)	339, 1513, 3095
Csp6I	GTAC	5 cut(s)	894, 1417, 1586, 1759, 2907
CspAI	ACCGGT	1 cut(s)	508
CviQI	GTAC	5 cut(s)	894, 1417, 1586, 1759, 2907
DpnI	GATC	8 cut(s)	568, 806, 1042, 1166, 2031, 2142, 2348, 2565
DpnII	GATC	8 cut(s)	566, 804, 1040, 1164, 2029, 2140, 2346, 2563
Eam1104I	CTCTTC	3 cut(s)	1031, 1146, 1388
EarI	CTCTTC	3 cut(s)	1031, 1146, 1388
Ecl136II	GAGCTC	1 cut(s)	2017
Eco105I	TACGTA	1 cut(s)	1794
Eco130I	CCWWGG	2 cut(s)	2020, 2934
Eco24I	GRGCYC	1 cut(s)	2019
Eco31I	GGTCTC	2 cut(s)	1504, 1973
Eco32I	GATATC	1 cut(s)	1939
Eco47I	GGWCC	4 cut(s)	313, 381, 985, 3121
Eco53kI	GAGCTC	1 cut(s)	2017
Eco72I	CACGTG	1 cut(s)	2402
Eco91I	GGTNACC	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	2017
EcoNI	CCTNNNNNAGG	2 cut(s)	2024, 2411
EcoO109I	RGGNCCY	1 cut(s)	2416
EcoO65I	GGTNACC	1 cut(s)	347
EcoRII	CCWGG	9 cut(s)	290, 339, 393, 1513, 1554, 1664, 1682, 1800, 3095
EcoRV	GATATC	1 cut(s)	1939
EcoT14I	CCWWGG	2 cut(s)	2020, 2934
EcoT22I	ATGCAT	1 cut(s)	2479
EcoT38I	GRGCYC	1 cut(s)	2019
ErhI	CCWWGG	2 cut(s)	2020, 2934
Esp3I	CGTCTC	1 cut(s)	185
FalI	AAGNNNNNCTT	6 cut(s)	129, 161, 1385, 1417, 1551, 1583
FaqI	GGGAC	3 cut(s)	663, 971, 2775
FauI	CCCGC	1 cut(s)	607
FblI	GTMKAC	2 cut(s)	998, 1733
FokI	GGATG	9 cut(s)	224, 769, 947, 1246, 2291, 2360, 2521, 2861, 3090
FriOI	GRGCYC	1 cut(s)	2019
FspBI	CTAG	3 cut(s)	1299, 2408, 3135
GsaI	CCCAGC	2 cut(s)	933, 1233
GsuI	CTGGAG	1 cut(s)	2215
HaeIII	GGCC	4 cut(s)	1443, 1653, 2073, 2417
HapII	CCGG	7 cut(s)	509, 834, 989, 1450, 2128, 2295, 3141
HgaI	GACGC	1 cut(s)	2671
Hin1I	GRCGYC	1 cut(s)	2663
HpaII	CCGG	7 cut(s)	509, 834, 989, 1450, 2128, 2295, 3141
HphI	GGTGA	6 cut(s)	359, 566, 919, 2204, 2563, 2831
Hpy166II	GTNNAC	7 cut(s)	999, 1417, 1419, 1734, 2909, 3037, 3093
Hpy8I	GTNNAC	7 cut(s)	999, 1417, 1419, 1734, 2909, 3037, 3093
HpyCH4III	ACNGT	6 cut(s)	220, 1537, 1763, 2526, 2882, 3090
HpyCH4IV	ACGT	4 cut(s)	194, 1793, 1901, 2401
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 830, 1226, 2133, 2638, 2715
HpySE526I	ACGT	4 cut(s)	194, 1793, 1901, 2401
Hsp92I	GRCGYC	1 cut(s)	2663
Kpn2I	TCCGGA	2 cut(s)	2294, 3140
Kzo9I	GATC	8 cut(s)	566, 804, 1040, 1164, 2029, 2140, 2346, 2563
LmnI	GCTCC	5 cut(s)	1427, 1831, 1935, 2022, 3143
Lsp1109I	GCAGC	9 cut(s)	193, 340, 619, 674, 1099, 2378, 2829, 3009, 3056
LweI	GCATC	5 cut(s)	1612, 2322, 2382, 2791, 2884
MabI	ACCWGGT	3 cut(s)	339, 1513, 3095
MaeI	CTAG	3 cut(s)	1299, 2408, 3135
MaeII	ACGT	4 cut(s)	194, 1793, 1901, 2401
MalI	GATC	8 cut(s)	568, 806, 1042, 1166, 2031, 2142, 2348, 2565
MboI	GATC	8 cut(s)	566, 804, 1040, 1164, 2029, 2140, 2346, 2563
MboII	GAAGA	8 cut(s)	364, 392, 1048, 1163, 1402, 1405, 2546, 2936
MfeI	CAATTG	1 cut(s)	1179
MflI	RGATCY	2 cut(s)	2029, 2346
MhlI	GDGCHC	4 cut(s)	1298, 1866, 1932, 2019
MlyI	GAGTC	3 cut(s)	50, 1099, 2757
MmeI	TCCRAC	1 cut(s)	2511
Mph1103I	ATGCAT	1 cut(s)	2479
MroI	TCCGGA	2 cut(s)	2294, 3140
MslI	CAYNNNNRTG	1 cut(s)	798
MspI	CCGG	7 cut(s)	509, 834, 989, 1450, 2128, 2295, 3141
MunI	CAATTG	1 cut(s)	1179
Mva1269I	GAATGC	2 cut(s)	415, 835
MvaI	CCWGG	9 cut(s)	292, 341, 395, 1515, 1556, 1666, 1684, 1802, 3097
MvnI	CGCG	1 cut(s)	3012
MwoI	GCNNNNNNNGC	6 cut(s)	29, 830, 1226, 2133, 2638, 2715
NciI	CCSGG	2 cut(s)	835, 989
NdeII	GATC	8 cut(s)	566, 804, 1040, 1164, 2029, 2140, 2346, 2563
NheI	GCTAGC	1 cut(s)	3134
NlaIV	GGNNCC	3 cut(s)	987, 2037, 2348
NmuCI	GTSAC	7 cut(s)	347, 2192, 2257, 2402, 2554, 2569, 2946
NsiI	ATGCAT	1 cut(s)	2479
NspI	RCATGY	6 cut(s)	311, 1075, 1215, 2555, 2997, 3067
NspV	TTCGAA	1 cut(s)	2106
PaeI	GCATGC	1 cut(s)	3067
PagI	TCATGA	1 cut(s)	3115
PaqCI	CACCTGC	1 cut(s)	1112
PciI	ACATGT	3 cut(s)	307, 1071, 1211
PctI	GAATGC	2 cut(s)	415, 835
PfoI	TCCNGGA	3 cut(s)	987, 1554, 1800
PinAI	ACCGGT	1 cut(s)	508
PleI	GAGTC	3 cut(s)	49, 1098, 2757
PmaCI	CACGTG	1 cut(s)	2402
PmlI	CACGTG	1 cut(s)	2402
PpsI	GAGTC	3 cut(s)	49, 1098, 2757
Ppu21I	YACGTR	2 cut(s)	1794, 2402
PscI	ACATGT	3 cut(s)	307, 1071, 1211
PshBI	ATTAAT	1 cut(s)	2172
PsiI	TTATAA	2 cut(s)	1646, 2160
Psp124BI	GAGCTC	1 cut(s)	2019
Psp6I	CCWGG	9 cut(s)	290, 339, 393, 1513, 1554, 1664, 1682, 1800, 3095
PspCI	CACGTG	1 cut(s)	2402
PspEI	GGTNACC	1 cut(s)	347
PspFI	CCCAGC	2 cut(s)	929, 1229
PspGI	CCWGG	9 cut(s)	290, 339, 393, 1513, 1554, 1664, 1682, 1800, 3095
PspN4I	GGNNCC	3 cut(s)	987, 2037, 2348
PspPI	GGNCC	5 cut(s)	313, 381, 985, 2416, 3121
PstI	CTGCAG	1 cut(s)	330
PstNI	CAGNNNCTG	2 cut(s)	258, 1520
PsuI	RGATCY	2 cut(s)	2029, 2346
RsaI	GTAC	5 cut(s)	895, 1418, 1587, 1760, 2908
RsaNI	GTAC	5 cut(s)	894, 1417, 1586, 1759, 2907
RseI	CAYNNNNRTG	1 cut(s)	798
SacI	GAGCTC	1 cut(s)	2019
Sau3AI	GATC	8 cut(s)	566, 804, 1040, 1164, 2029, 2140, 2346, 2563
Sau96I	GGNCC	5 cut(s)	313, 381, 985, 2416, 3121
ScaI	AGTACT	1 cut(s)	1587
SchI	GAGTC	3 cut(s)	50, 1099, 2757
SduI	GDGCHC	4 cut(s)	1298, 1866, 1932, 2019
SexAI	ACCWGGT	3 cut(s)	339, 1513, 3095
SfaNI	GCATC	5 cut(s)	1612, 2322, 2382, 2791, 2884
SfcI	CTRYAG	2 cut(s)	326, 2352
SfuI	TTCGAA	1 cut(s)	2106
SinI	GGWCC	4 cut(s)	313, 381, 985, 3121
SmiMI	CAYNNNNRTG	1 cut(s)	798
SmlI	CTYRAG	1 cut(s)	2765
SmoI	CTYRAG	1 cut(s)	2765
SnaBI	TACGTA	1 cut(s)	1794
SphI	GCATGC	1 cut(s)	3067
SsiI	CCGC	6 cut(s)	611, 614, 619, 953, 1818, 3012
SspMI	CTAG	3 cut(s)	1299, 2408, 3135
SstI	GAGCTC	1 cut(s)	2019
StyI	CCWWGG	2 cut(s)	2020, 2934
TaaI	ACNGT	6 cut(s)	220, 1537, 1763, 2526, 2882, 3090
TaiI	ACGT	4 cut(s)	197, 1796, 1904, 2404
TaqI	TCGA	6 cut(s)	121, 425, 939, 1345, 2106, 2876
TaqII	GACCGA	2 cut(s)	398, 3138
TatI	WGTACW	2 cut(s)	1416, 1585
TauI	GCSGC	1 cut(s)	614
TscAI	CASTG	5 cut(s)	225, 1871, 2203, 2887, 2904
TseFI	GTSAC	7 cut(s)	347, 2192, 2257, 2402, 2554, 2569, 2946
TseI	GCWGC	9 cut(s)	181, 328, 632, 687, 1112, 2391, 2842, 2997, 3044
Tsp45I	GTSAC	7 cut(s)	347, 2192, 2257, 2402, 2554, 2569, 2946
TspGWI	ACGGA	3 cut(s)	1616, 1901, 2712
TspRI	CASTG	5 cut(s)	225, 1871, 2203, 2887, 2904
VpaK11BI	GGWCC	4 cut(s)	313, 381, 985, 3121
VspI	ATTAAT	1 cut(s)	2172
XagI	CCTNNNNNAGG	2 cut(s)	2024, 2411
XapI	RAATTY	4 cut(s)	409, 1986, 2089, 2927
XceI	RCATGY	6 cut(s)	311, 1075, 1215, 2555, 2997, 3067
XmiI	GTMKAC	2 cut(s)	998, 1733
XspI	CTAG	3 cut(s)	1299, 2408, 3135
ZrmI	AGTACT	1 cut(s)	1587
Zsp2I	ATGCAT	1 cut(s)	2479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.