Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Reverse (-)

7455418 .. 7459228

Gene Structure 3811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG100600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3063 bp

ATGGGTTTAGCTTCACATGGGAGAAACCTTGCATTTCAGATTGGTAATCCAAAATCAAGGCCTTTGATTCGGGTCCACTACTGCAGTTATAAATCAGAGAGTAAAAAGCAGCAAGAGGATGATGAAACAGTGAGGGAAATCTGTACCATTCTGAAGCGAAGCAGAGAGTGGGAGTCCGTGTTGAGCTCATCAGGGTTTCCCAAGAAGCTAAACCCTCGTGTGGTTCGATCCGTTCTTCAACAACACCACCAGGTTGGTGACCCAGAAAGACTTTTAAGTTTCTTTGATTGGTCTGGTGCCCAATTGGGTGTGCTCCCAAATTTGCATTCTTTTTCGATTATGGCTGTTGTTTTGTGTAATTCCAAGCTTTTTTGGCATGCCCATGGTGTGTTGGAGAGAATGGTTAGGACCCGGAAGCCGGCTTTAGAAGTTTTGGATTGTGTTGTTAGGTGTTTTAGAGAGTTTGAGGGGTCTGATATGGTGGTTTTTGAGATTTTGATCAATGTGTTTACGATGGGGGGTTGGTTTTATGAGGCTGCTGATGTGTTTTTGGGTGTTAGGAGTGTTGGGATTTCACCGAGATTGGAATGCTGTAATTCTCTGTTGAACGAGTTGTTGAAGGGTAATAGGATGAGGCTGTTCTGGAAAGTGTATGATGGGATGTTAGAGGCTAAGATTGAGCCGGATTTTTACACTTATAGCAATGTGATCAACGCACATTGTCAGTTTGGGGATGTTAGGAAGGGTAAGAGGCTACTGGATGAAATGGTAGAGAAGGGCTGTAATCCGAATTTGAGTACCTTCAATGTGGTGATTGATGGATTGTGTAGAGGTAGGGCTGTTGATGAAGCCATTGAGTTGAAAAAATCGATGGTTGAGAAGGGATTGACACCTGATAGGTATACATATTCAGTACTAATTGATGGATTGTGCAGACAGAAGAGATCAGAAGAAGCAAAGTTGGTATTCAATGAGATGTATGATATAGGTTTGAATCCTGACCGCACCTTGTACATTGCTTTGATTGATGGATTCTTGAAAGAAAATAACGTGGATAAGGCCCTCAGGATCAAAGAAGAGATGGTCGCTCGAGGAGTTAAGTTGTGCGGTGTCACATATAATGTGATTTTTGCAGGGATCTGTAAAATAGGTAAGATGGAGAAGGCAGAATCTCTTTTGAATGAGATGAATGCTATGGGAATTGAACCTAATACCCAGACATATAACTATTTAATTGATGGGTACTGTCGGGAGCAAAATGTAAACAAGGCTTATGCATTACTTAATGAGATGAAGCAAAGGAACTTGACACCCAATGAGGTCACTTGTGGAGTGGTAATCAATGGCCTATGCCGGTCTGGAGATCTACAAGGGGCTAATAATGTTTTGAAGGTAATGATCACTGGGGGTTTGAAACCCGGTAGAGTTATCTACACAACTCTAATAAAAGGTCATCTACAAGAAAGAAAATTTGAAGAGGCGATAAAACTATTGAAGGAAATGAGTGAAAAAGGTGTCATTCCTGATGTCTTTTGCTACAATTCTCTTGTAATTGGCCTGTGCAAAGCGAGGAAATTTGAAGAAGCCAACACTTATTTGGTGGAAATGGTTGAGAGAGGATTAAAGCCTAATGCATATACTTATGGGGCTTTTGTTCATGGGTACTGTAAGGAGAGGGAAATGCAACTCGCGAATTGGTATTTCGAGGAGATGCTAGGTTCTGGTATAGCTCCCAATGAGTTTATCTATACAGCACTGATTGAAGGACACTGCAAAGAGGGTAACTTGGTTGAAGCTCTTTCAACATTTAGATCCATGTTGGGACGCGGGGTGACCCCAGATATCAAAACATACAGTGTCATTATTCATGGTCTCTCCAGGAGAGGAAAACTTGAAGAAGCAATGGGGATCTTCTCTGAGCTCCTTGGCAAGAATTTGATTCCGGATGTATTTACATACAGCTCTCTCATATCTGGCTTTTGCAAGCAGGGAAATGCAGAGAAGTCTTTCCAACTTCTTGAACAGATGTCTCAGAGAGGTATTAAACCAAACATTGTCACTTACAACGGCTTGATTAATGGATTGTGCAAGTCTGGGGACATTGACAGAGCCAGAGAAGTGTTTGATGCAATTTCAGGAAAGGGTTTAACTCCTAATGCTGTGACTTATGCTACCATGATGGACGGATATAGTAAATCTGGAAAATTAACTGAGGCTTTACAATTATTAGATGAGATGCAACTCCATGGGATTCCTACTGATAGTTTCATTTACTGCACCCTGATTGATGGGTTCTGCATGGCAGGTGATACAGACGAGGCCTTGTCTTTATTTAATGAAGTGGTGGATAAGGGCCTTGCTGCCACTTCTTCTTTCAATGCATTGATTGATGGCTTCTGTAAATTGGGGAAGCAGATGGAAGCCAAACAGTTGTTTGAAGATATGGTGGATAAGCATGTGACACCAAATCATGTTACGTACACGATTCTGATTGATTCTCTCTGCAAAGAGGGTTTGTTGAGGGAATCAGAAGAGCTATTTCTGGAAATGCAGGAAAGGAATCTGCAGGCCAATATTGTAACCTACACTTCACTTTTGCAGGGCTACAACAGCACAGGAAGCAGAGTAAAGATGTTTGCTCTTTACGAGGAAATGATAGCAAGGGGACTCAAACCTGATGAAATAACCTATGGTCTGATGGTCGAGGCCTATTGCGAAGAAGGTGATGTGGTAAAGTCTCTAAAGCTGGTGGATGAAAGTTTGGTCAATAGTGTTAATTTGAACAGTCATGTGGTAGATGCTCTGGCAAATGCCCTATTCCAAAAGGCAGAATTTTCGAAAGTGATGAAGTCACTTGATGAAATGGGAGAGCAAGGATTTGTGCTCAGTCTTGCTACATGTAAAACATTAGTTCACGGATTTTTCTACAAATCAGGGAATGCAGAGAGGGCAGCAAGGATTCTCGAGAGCATGCTCAGGTTTGGATGGGTTTCGGAGTCCACAAGTATAAGCGACTTAATTAATAATGAAGAACAAAATGAGGCAAGCTCTGGGATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

1020

Amino Acids

114.43

Weight (kDa)

5.83

Isoelectric Point (pI)

27.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	197 - 242	4.5e-09	PPR repeat family
PPR_long	PF17177	199 - 307	3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	218 - 273	4.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	226 - 257	8e-07	PPR repeat
PPR	PF01535	231 - 261	8.9e-07	PPR repeat
PPR_2	PF13041	233 - 277	2.6e-12	PPR repeat family
PPR_1	PF12854	259 - 292	7.7e-09	PPR repeat
PPR_2	PF13041	267 - 312	4e-15	PPR repeat family
PPR_1	PF12854	294 - 326	9.5e-10	PPR repeat
PPR	PF01535	301 - 330	6.3e-06	PPR repeat
PPR_3	PF13812	356 - 415	2.9e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	371 - 417	1.3e-16	PPR repeat family
PPR_long	PF17177	382 - 442	9.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	399 - 432	3.5e-12	PPR repeat
PPR_2	PF13041	404 - 452	6.1e-17	PPR repeat family
PPR	PF01535	407 - 435	8.9e-07	PPR repeat
PPR_2	PF13041	473 - 522	7e-15	PPR repeat family
PPR	PF01535	476 - 506	3.6e-07	PPR repeat
PPR_1	PF12854	504 - 536	3.3e-06	PPR repeat
PPR_2	PF13041	508 - 557	1.5e-13	PPR repeat family
PPR_3	PF13812	534 - 587	6.5e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	567 - 676	2.2e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	571 - 623	5.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	575 - 606	4.5e-08	PPR repeat
PPR_2	PF13041	578 - 626	3.4e-14	PPR repeat family
PPR	PF01535	582 - 611	1.9e-06	PPR repeat
PPR_1	PF12854	609 - 640	2.8e-06	PPR repeat
PPR_2	PF13041	617 - 662	1.3e-12	PPR repeat family
PPR_3	PF13812	637 - 693	1.4e-11	Pentatricopeptide repeat domain
PPR_long	PF17177	638 - 745	4.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	644 - 677	1.1e-11	PPR repeat
PPR_2	PF13041	648 - 697	6.3e-19	PPR repeat family
PPR	PF01535	651 - 681	2.4e-07	PPR repeat
PPR_long	PF17177	665 - 772	1.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	672 - 730	1.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	679 - 709	1e-12	PPR repeat
PPR_2	PF13041	683 - 730	2.1e-14	PPR repeat family
PPR	PF01535	686 - 715	2e-06	PPR repeat
PPR_1	PF12854	714 - 747	5.4e-10	PPR repeat
PPR_2	PF13041	718 - 766	1.7e-13	PPR repeat family
PPR	PF01535	721 - 751	9.2e-08	PPR repeat
PPR_1	PF12854	750 - 780	3.1e-08	PPR repeat
PPR	PF01535	757 - 786	6.6e-07	PPR repeat
PPR_long	PF17177	768 - 911	1.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	777 - 832	6.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	789 - 836	5e-16	PPR repeat family
PPR_1	PF12854	791 - 816	1.5e-06	PPR repeat
PPR_1	PF12854	819 - 850	1.1e-10	PPR repeat
PPR	PF01535	825 - 854	2e-08	PPR repeat
PPR_2	PF13041	830 - 869	9.9e-09	PPR repeat family
PPR_3	PF13812	846 - 904	4.9e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	858 - 905	9e-11	PPR repeat family
PPR_1	PF12854	888 - 919	2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AarI	CACCTGC	1 cut(s)	2294
Acc36I	ACCTGC	1 cut(s)	2294
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	902
AccII	CGCG	2 cut(s)	1691, 1827
AccIII	TCCGGA	1 cut(s)	1942
AciI	CCGC	3 cut(s)	1003, 1107, 1827
AclWI	GGATC	5 cut(s)	222, 1076, 1145, 1806, 1916
AcsI	RAATTY	6 cut(s)	319, 790, 1469, 1574, 1933, 2831
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	7 cut(s)	145, 799, 915, 1013, 1244, 1664, 2480
AfiI	CCNNNNNNNGG	2 cut(s)	220, 418
AflIII	ACRYGT	1 cut(s)	2897
AjnI	CCWGG	2 cut(s)	249, 1877
AjuI	GAANNNNNNNTTGG	2 cut(s)	310, 342
Alw21I	GWGCWC	4 cut(s)	188, 315, 1923, 2886
Alw26I	GTCTC	3 cut(s)	1877, 2034, 2742
AlwI	GGATC	5 cut(s)	222, 1076, 1145, 1806, 1916
Ama87I	CYCGRG	2 cut(s)	1089, 2963
Aor13HI	TCCGGA	1 cut(s)	1942
AoxI	GGCC	8 cut(s)	59, 1059, 1345, 1555, 2319, 2353, 2568, 2706
ApeKI	GCWGC	4 cut(s)	109, 536, 2360, 2951
ApoI	RAATTY	6 cut(s)	319, 790, 1469, 1574, 1933, 2831
AseI	ATTAAT	2 cut(s)	2076, 3021
Asp700I	GAANNNNTTC	1 cut(s)	2006
AspS9I	GGNCC	4 cut(s)	73, 408, 1060, 2353
AsuC2I	CCSGG	2 cut(s)	412, 1419
AsuHPI	GGTGA	6 cut(s)	269, 567, 823, 1843, 2318, 2735
AsuII	TTCGAA	1 cut(s)	2837
AvaI	CYCGRG	2 cut(s)	1089, 2963
AvaII	GGWCC	2 cut(s)	73, 408
AxyI	CCTNAGG	1 cut(s)	1064
BaeGI	GKGCMC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	188, 1923
BauI	CACGAG	1 cut(s)	216
Bbv12I	GWGCWC	4 cut(s)	188, 315, 1923, 2886
BbvI	GCAGC	4 cut(s)	121, 523, 2347, 2963
BceAI	ACGGC	1 cut(s)	2083
BcgI	CGANNNNNNTGC	2 cut(s)	2817, 2851
BciT130I	CCWGG	2 cut(s)	251, 1879
BclI	TGATCA	3 cut(s)	498, 708, 1398
BcnI	CCSGG	2 cut(s)	412, 1419
BcoDI	GTCTC	3 cut(s)	1877, 2034, 2742
BfaI	CTAG	1 cut(s)	1715
BfmI	CTRYAG	2 cut(s)	82, 2564
BfuAI	ACCTGC	1 cut(s)	2294
BglII	AGATCT	1 cut(s)	1363
BisI	GCNGC	4 cut(s)	110, 537, 2361, 2952
BlsI	GCNGC	4 cut(s)	111, 538, 2362, 2953
BmcAI	AGTACT	1 cut(s)	915
Bme1390I	CCNGG	4 cut(s)	251, 412, 1419, 1879
Bme18I	GGWCC	2 cut(s)	73, 408
BmeT110I	CYCGRG	2 cut(s)	1089, 2963
BmgT120I	GGNCC	4 cut(s)	73, 408, 1060, 2353
BmiI	GGNNCC	3 cut(s)	74, 298, 410
BmrFI	CCNGG	4 cut(s)	251, 412, 1419, 1879
BmrI	ACTGGG	1 cut(s)	1413
BmsI	GCATC	4 cut(s)	1701, 2116, 2226, 2788
BmuI	ACTGGG	1 cut(s)	1413
BplI	GAGNNNNNCTC	1 cut(s)	3032
BpmI	CTGGAG	2 cut(s)	1380, 1861
Bpu10I	CCTNAGC	1 cut(s)	2975
Bpu14I	TTCGAA	1 cut(s)	2837
BpuMI	CCSGG	2 cut(s)	412, 1419
Bsa29I	ATCGAT	1 cut(s)	869
BsaAI	YACGTR	1 cut(s)	2478
BsaBI	GATNNNNATC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	1877
BsaJI	CCNNGG	3 cut(s)	382, 1924, 2245
BsaWI	WCCGGW	1 cut(s)	1942
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 418
Bse118I	RCCGGY	2 cut(s)	418, 1353
Bse1I	ACTGG	2 cut(s)	762, 1408
Bse21I	CCTNAGG	1 cut(s)	1064
Bse3DI	GCAATG	3 cut(s)	709, 1014, 1908
Bse8I	GATNNNNATC	1 cut(s)	497
BseAI	TCCGGA	1 cut(s)	1942
BseBI	CCWGG	2 cut(s)	251, 1879
BseCI	ATCGAT	1 cut(s)	869
BseDI	CCNNGG	3 cut(s)	382, 1924, 2245
BseGI	GGATG	8 cut(s)	124, 636, 666, 739, 766, 1951, 2758, 2990
BseJI	GATNNNNATC	1 cut(s)	497
BseLI	CCNNNNNNNGG	2 cut(s)	220, 418
BseMI	GCAATG	3 cut(s)	709, 1014, 1908
BseMII	CTCAG	6 cut(s)	1078, 1908, 2045, 2202, 2899, 2989
BseNI	ACTGG	2 cut(s)	762, 1408
BseRI	GAGGAG	2 cut(s)	1107, 1721
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	4 cut(s)	121, 523, 2347, 2963
BsgI	GTGCAG	2 cut(s)	952, 2260
Bsh1236I	CGCG	2 cut(s)	1691, 1827
BshFI	GGCC	8 cut(s)	61, 1061, 1347, 1557, 2321, 2355, 2570, 2708
BshNI	GGYRCC	1 cut(s)	296
BshVI	ATCGAT	1 cut(s)	869
BsiHKAI	GWGCWC	4 cut(s)	188, 315, 1923, 2886
BsiHKCI	CYCGRG	2 cut(s)	1089, 2963
BsiSI	CCGG	6 cut(s)	412, 419, 683, 1354, 1419, 1943
BslFI	GGGAC	3 cut(s)	1836, 2111, 2679
BslI	CCNNNNNNNGG	2 cut(s)	220, 418
BsmAI	GTCTC	3 cut(s)	1877, 2034, 2742
BsmFI	GGGAC	3 cut(s)	1836, 2111, 2679
BsmI	GAATGC	4 cut(s)	325, 593, 1195, 2944
BsnI	GGCC	8 cut(s)	61, 1061, 1347, 1557, 2321, 2355, 2570, 2708
Bso31I	GGTCTC	1 cut(s)	1877
BsoBI	CYCGRG	2 cut(s)	1089, 2963
Bsp119I	TTCGAA	1 cut(s)	2837
Bsp1286I	GDGCHC	5 cut(s)	188, 301, 315, 1923, 2886
Bsp13I	TCCGGA	1 cut(s)	1942
Bsp1407I	TGTACA	1 cut(s)	1011
Bsp19I	CCATGG	2 cut(s)	382, 2245
Bsp68I	TCGCGA	1 cut(s)	1691
BspACI	CCGC	3 cut(s)	1003, 1107, 1827
BspANI	GGCC	8 cut(s)	61, 1061, 1347, 1557, 2321, 2355, 2570, 2708
BspCNI	CTCAG	6 cut(s)	1077, 1909, 2044, 2203, 2898, 2988
BspDI	ATCGAT	1 cut(s)	869
BspEI	TCCGGA	1 cut(s)	1942
BspFNI	CGCG	2 cut(s)	1691, 1827
BspLI	GGNNCC	3 cut(s)	74, 298, 410
BspMAI	CTGCAG	2 cut(s)	86, 2568
BspMI	ACCTGC	1 cut(s)	2294
BspPI	GGATC	5 cut(s)	222, 1076, 1145, 1806, 1916
BspQI	GCTCTTC	1 cut(s)	2526
BspT104I	TTCGAA	1 cut(s)	2837
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	1877
BsrDI	GCAATG	3 cut(s)	709, 1014, 1908
BsrFI	RCCGGY	2 cut(s)	418, 1353
BsrGI	TGTACA	1 cut(s)	1011
BsrI	ACTGG	2 cut(s)	762, 1408
BssAI	RCCGGY	2 cut(s)	418, 1353
BssECI	CCNNGG	3 cut(s)	382, 1924, 2245
BssNAI	GTATAC	1 cut(s)	903
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	3 cut(s)	382, 1924, 2245
Bst1107I	GTATAC	1 cut(s)	903
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	251, 1879
Bst4CI	ACNGT	6 cut(s)	130, 1247, 1667, 1856, 2430, 2786
Bst6I	CTCTTC	4 cut(s)	935, 1071, 1470, 2526
BstAUI	TGTACA	1 cut(s)	1011
BstBAI	YACGTR	1 cut(s)	2478
BstBI	TTCGAA	1 cut(s)	2837
BstC8I	GCNNGC	6 cut(s)	378, 420, 1985, 2568, 2972, 3046
BstDEI	CTNAG	7 cut(s)	672, 1064, 1917, 2031, 2211, 2885, 2975
BstDSI	CCRYGG	2 cut(s)	382, 2245
BstEII	GGTNACC	2 cut(s)	257, 1831
BstF5I	GGATG	8 cut(s)	124, 636, 666, 739, 766, 1951, 2758, 2990
BstFNI	CGCG	2 cut(s)	1691, 1827
BstMAI	GTCTC	3 cut(s)	1877, 2034, 2742
BstMWI	GCNNNNNNNGC	4 cut(s)	373, 2610, 2619, 2948
BstNI	CCWGG	2 cut(s)	251, 1879
BstNSI	RCATGY	4 cut(s)	380, 2459, 2901, 2974
BstPI	GGTNACC	2 cut(s)	257, 1831
BstSCI	CCNGG	4 cut(s)	249, 410, 1417, 1877
BstSFI	CTRYAG	2 cut(s)	82, 2564
BstSLI	GKGCMC	1 cut(s)	301
BstSNI	TACGTA	1 cut(s)	2478
BstUI	CGCG	2 cut(s)	1691, 1827
BstV1I	GCAGC	4 cut(s)	121, 523, 2347, 2963
BstX2I	RGATCY	4 cut(s)	1137, 1363, 1811, 1908
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	4 cut(s)	1137, 1363, 1811, 1908
BstZ17I	GTATAC	1 cut(s)	903
Bsu15I	ATCGAT	1 cut(s)	869
Bsu36I	CCTNAGG	1 cut(s)	1064
BsuRI	GGCC	8 cut(s)	61, 1061, 1347, 1557, 2321, 2355, 2570, 2708
BsuTUI	ATCGAT	1 cut(s)	869
BtgI	CCRYGG	2 cut(s)	382, 2245
BtsCI	GGATG	8 cut(s)	124, 636, 666, 739, 766, 1951, 2758, 2990
BtsI	GCAGTG	1 cut(s)	1768
BtsIMutI	CAGTG	5 cut(s)	135, 1401, 1754, 1768, 1861
BtuMI	TCGCGA	1 cut(s)	1691
BveI	ACCTGC	1 cut(s)	2294
Cac8I	GCNNGC	6 cut(s)	378, 420, 1985, 2568, 2972, 3046
Cfr10I	RCCGGY	2 cut(s)	418, 1353
Cfr13I	GGNCC	4 cut(s)	73, 408, 1060, 2353
ClaI	ATCGAT	1 cut(s)	869
CseI	GACGC	1 cut(s)	1833
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	7 cut(s)	144, 798, 914, 1012, 1243, 1663, 2479
CviQI	GTAC	7 cut(s)	144, 798, 914, 1012, 1243, 1663, 2479
DdeI	CTNAG	7 cut(s)	672, 1064, 1917, 2031, 2211, 2885, 2975
Eam1104I	CTCTTC	4 cut(s)	935, 1071, 1470, 2526
EarI	CTCTTC	4 cut(s)	935, 1071, 1470, 2526
Ecl136II	GAGCTC	2 cut(s)	186, 1921
Eco105I	TACGTA	1 cut(s)	2478
Eco130I	CCWWGG	3 cut(s)	382, 1924, 2245
Eco147I	AGGCCT	3 cut(s)	61, 2321, 2708
Eco24I	GRGCYC	2 cut(s)	188, 1923
Eco31I	GGTCTC	1 cut(s)	1877
Eco32I	GATATC	1 cut(s)	1843
Eco47I	GGWCC	2 cut(s)	73, 408
Eco53kI	GAGCTC	2 cut(s)	186, 1921
Eco57I	CTGAAG	1 cut(s)	173
Eco81I	CCTNAGG	1 cut(s)	1064
Eco88I	CYCGRG	2 cut(s)	1089, 2963
Eco91I	GGTNACC	2 cut(s)	257, 1831
EcoICRI	GAGCTC	2 cut(s)	186, 1921
EcoO109I	RGGNCCY	3 cut(s)	408, 1060, 2353
EcoO65I	GGTNACC	2 cut(s)	257, 1831
EcoRII	CCWGG	2 cut(s)	249, 1877
EcoRV	GATATC	1 cut(s)	1843
EcoT14I	CCWWGG	3 cut(s)	382, 1924, 2245
EcoT22I	ATGCAT	3 cut(s)	1279, 1636, 2383
EcoT38I	GRGCYC	2 cut(s)	188, 1923
ErhI	CCWWGG	3 cut(s)	382, 1924, 2245
FaqI	GGGAC	3 cut(s)	1836, 2111, 2679
FauI	CCCGC	1 cut(s)	1820
FbaI	TGATCA	3 cut(s)	498, 708, 1398
FblI	GTMKAC	1 cut(s)	902
Fnu4HI	GCNGC	4 cut(s)	110, 537, 2361, 2952
FokI	GGATG	8 cut(s)	131, 643, 673, 746, 773, 1958, 2765, 2997
FriOI	GRGCYC	2 cut(s)	188, 1923
Fsp4HI	GCNGC	4 cut(s)	110, 537, 2361, 2952
FspBI	CTAG	1 cut(s)	1715
GluI	GCNGC	4 cut(s)	110, 537, 2361, 2952
GsuI	CTGGAG	2 cut(s)	1380, 1861
HaeIII	GGCC	8 cut(s)	61, 1061, 1347, 1557, 2321, 2355, 2570, 2708
HapII	CCGG	6 cut(s)	412, 419, 683, 1354, 1419, 1943
HgaI	GACGC	1 cut(s)	1833
HindIII	AAGCTT	1 cut(s)	365
HpaII	CCGG	6 cut(s)	412, 419, 683, 1354, 1419, 1943
HphI	GGTGA	6 cut(s)	269, 567, 823, 1843, 2318, 2735
Hpy166II	GTNNAC	7 cut(s)	76, 510, 903, 1264, 2481, 2914, 3000
Hpy8I	GTNNAC	7 cut(s)	76, 510, 903, 1264, 2481, 2914, 3000
HpyCH4III	ACNGT	6 cut(s)	130, 1247, 1667, 1856, 2430, 2786
HpyCH4IV	ACGT	2 cut(s)	1050, 2477
HpyF10VI	GCNNNNNNNGC	4 cut(s)	373, 2610, 2619, 2948
HpyF3I	CTNAG	7 cut(s)	672, 1064, 1917, 2031, 2211, 2885, 2975
HpySE526I	ACGT	2 cut(s)	1050, 2477
Kpn2I	TCCGGA	1 cut(s)	1942
KroI	GCCGGC	1 cut(s)	418
KroNI	GCCGGC	1 cut(s)	420
Ksp22I	TGATCA	3 cut(s)	498, 708, 1398
LguI	GCTCTTC	1 cut(s)	2526
LmnI	GCTCC	4 cut(s)	318, 1252, 1735, 1926
Lsp1109I	GCAGC	4 cut(s)	121, 523, 2347, 2963
LweI	GCATC	4 cut(s)	1701, 2116, 2226, 2788
MabI	ACCWGGT	1 cut(s)	249
MaeI	CTAG	1 cut(s)	1715
MaeII	ACGT	2 cut(s)	1050, 2477
MfeI	CAATTG	1 cut(s)	302
MflI	RGATCY	4 cut(s)	1137, 1363, 1811, 1908
MhlI	GDGCHC	5 cut(s)	188, 301, 315, 1923, 2886
MlyI	GAGTC	3 cut(s)	182, 2661, 3005
MmeI	TCCRAC	2 cut(s)	372, 2035
Mph1103I	ATGCAT	3 cut(s)	1279, 1636, 2383
MroI	TCCGGA	1 cut(s)	1942
MroNI	GCCGGC	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	2006
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	6 cut(s)	412, 419, 683, 1354, 1419, 1943
MspR9I	CCNGG	4 cut(s)	251, 412, 1419, 1879
MunI	CAATTG	1 cut(s)	302
Mva1269I	GAATGC	4 cut(s)	325, 593, 1195, 2944
MvaI	CCWGG	2 cut(s)	251, 1879
MvnI	CGCG	2 cut(s)	1691, 1827
MwoI	GCNNNNNNNGC	4 cut(s)	373, 2610, 2619, 2948
NaeI	GCCGGC	1 cut(s)	420
NciI	CCSGG	2 cut(s)	412, 1419
NcoI	CCATGG	2 cut(s)	382, 2245
NgoMIV	GCCGGC	1 cut(s)	418
NlaIV	GGNNCC	3 cut(s)	74, 298, 410
NmuCI	GTSAC	8 cut(s)	257, 1111, 1321, 1831, 2056, 2161, 2458, 2850
NruI	TCGCGA	1 cut(s)	1691
NsiI	ATGCAT	3 cut(s)	1279, 1636, 2383
NspI	RCATGY	4 cut(s)	380, 2459, 2901, 2974
NspV	TTCGAA	1 cut(s)	2837
PacI	TTAATTAA	1 cut(s)	3021
PaeI	GCATGC	2 cut(s)	380, 2974
PaeR7I	CTCGAG	2 cut(s)	1089, 2963
PaqCI	CACCTGC	1 cut(s)	2294
PceI	AGGCCT	3 cut(s)	61, 2321, 2708
PciI	ACATGT	1 cut(s)	2897
PciSI	GCTCTTC	1 cut(s)	2526
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PctI	GAATGC	4 cut(s)	325, 593, 1195, 2944
PdiI	GCCGGC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	2006
PfoI	TCCNGGA	1 cut(s)	1877
PkrI	GCNGC	4 cut(s)	111, 538, 2362, 2953
PleI	GAGTC	3 cut(s)	181, 2661, 3004
PpsI	GAGTC	3 cut(s)	181, 2661, 3004
Ppu21I	YACGTR	1 cut(s)	2478
PpuMI	RGGWCCY	1 cut(s)	408
PscI	ACATGT	1 cut(s)	2897
PshBI	ATTAAT	2 cut(s)	2076, 3021
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	2 cut(s)	188, 1923
Psp5II	RGGWCCY	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	249, 1877
PspEI	GGTNACC	2 cut(s)	257, 1831
PspGI	CCWGG	2 cut(s)	249, 1877
PspN4I	GGNNCC	3 cut(s)	74, 298, 410
PspPI	GGNCC	4 cut(s)	73, 408, 1060, 2353
PspPPI	RGGWCCY	1 cut(s)	408
PspXI	VCTCGAGB	1 cut(s)	1089
PstI	CTGCAG	2 cut(s)	86, 2568
PsuI	RGATCY	4 cut(s)	1137, 1363, 1811, 1908
RruI	TCGCGA	1 cut(s)	1691
RsaI	GTAC	7 cut(s)	145, 799, 915, 1013, 1244, 1664, 2480
RsaNI	GTAC	7 cut(s)	144, 798, 914, 1012, 1243, 1663, 2479
RseI	CAYNNNNRTG	1 cut(s)	381
SacI	GAGCTC	2 cut(s)	188, 1923
SapI	GCTCTTC	1 cut(s)	2526
SatI	GCNGC	4 cut(s)	110, 537, 2361, 2952
Sau96I	GGNCC	4 cut(s)	73, 408, 1060, 2353
ScaI	AGTACT	1 cut(s)	915
SchI	GAGTC	3 cut(s)	182, 2661, 3005
ScrFI	CCNGG	4 cut(s)	251, 412, 1419, 1879
SduI	GDGCHC	5 cut(s)	188, 301, 315, 1923, 2886
SexAI	ACCWGGT	1 cut(s)	249
SfaNI	GCATC	4 cut(s)	1701, 2116, 2226, 2788
SfcI	CTRYAG	2 cut(s)	82, 2564
Sfr274I	CTCGAG	2 cut(s)	1089, 2963
SfuI	TTCGAA	1 cut(s)	2837
SinI	GGWCC	2 cut(s)	73, 408
SlaI	CTCGAG	2 cut(s)	1089, 2963
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	1089, 2963
SmoI	CTYRAG	2 cut(s)	1089, 2963
SnaBI	TACGTA	1 cut(s)	2478
SphI	GCATGC	2 cut(s)	380, 2974
SseBI	AGGCCT	3 cut(s)	61, 2321, 2708
SsiI	CCGC	3 cut(s)	1003, 1107, 1827
SspI	AATATT	1 cut(s)	2575
SspMI	CTAG	1 cut(s)	1715
SstI	GAGCTC	2 cut(s)	188, 1923
StuI	AGGCCT	3 cut(s)	61, 2321, 2708
StyD4I	CCNGG	4 cut(s)	249, 410, 1417, 1877
StyI	CCWWGG	3 cut(s)	382, 1924, 2245
TaaI	ACNGT	6 cut(s)	130, 1247, 1667, 1856, 2430, 2786
TaiI	ACGT	2 cut(s)	1053, 2480
TaqI	TCGA	8 cut(s)	226, 335, 869, 1090, 1704, 2703, 2837, 2964
TatI	WGTACW	2 cut(s)	913, 1011
TscAI	CASTG	5 cut(s)	135, 1408, 1761, 1775, 1861
TseFI	GTSAC	8 cut(s)	257, 1111, 1321, 1831, 2056, 2161, 2458, 2850
TseI	GCWGC	4 cut(s)	109, 536, 2360, 2951
Tsp45I	GTSAC	8 cut(s)	257, 1111, 1321, 1831, 2056, 2161, 2458, 2850
TspGWI	ACGGA	4 cut(s)	166, 220, 2199, 2931
TspRI	CASTG	5 cut(s)	135, 1408, 1761, 1775, 1861
VpaK11BI	GGWCC	2 cut(s)	73, 408
VspI	ATTAAT	2 cut(s)	2076, 3021
XapI	RAATTY	6 cut(s)	319, 790, 1469, 1574, 1933, 2831
XceI	RCATGY	4 cut(s)	380, 2459, 2901, 2974
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1594
XhoI	CTCGAG	2 cut(s)	1089, 2963
XmiI	GTMKAC	1 cut(s)	902
XmnI	GAANNNNTTC	1 cut(s)	2006
XspI	CTAG	1 cut(s)	1715
ZrmI	AGTACT	1 cut(s)	915
Zsp2I	ATGCAT	3 cut(s)	1279, 1636, 2383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.