Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01027

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Forward (+)

42932 .. 44171

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G022150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGTTTAGCTTCACATGGGAGAAACCTTACATTTCAGATTGGTAATCCAAAGTCAAGGCTTTTGATTCGGGTCCACTACTGCAGTTATAAATCAGAGAGTAAAAAGCAAGAGGATGATGAAACAGTGAGGGAAATCTGTACCATTCTGAAGCGAAGTAGAGAGTGGGAGTCCGTTGGTGACCCAGAAAGACTTTTAAGTTTCTTTGATTGGTCTTGTGCCCGATTGGGTGTGCTCCCAAATTTGCATTCTTTTTCGATTATGGCTGTTGTTTTGTGTAATTCCAAGCTTTTTGGGCATGCCCATGGTGTGTTGGAGAGAATAGTTAGGACCTGGAAGCCGGCTTTAGAAGTTTTGGATTGTGTTGTTAGGTGTTTTAGAGAGTTTGAGGGGTCTGATATGGTGGTTTTTGAGATTTTGATTAATATGTTTACGATGGGGGGTTGGTTTTATGAGGCTGCTGATGTGTTTTTGGGTGTTAGGAGTGTTGGGATTTCGCCGAGATTGGAATGCTGTAATTCTCTGTTGAATGACTTGTTGAAGGGTAATAGGATGAGGCTGTTCTGGAAAGTGTATGATGGGATGTTAGAGGCTAAGATTGAGCTAGATTTTTACACTTATAGTAATGTGATCAATGCACATTGTAAGTTTGGGGATGTTAGGCAGGGTAAGAGGCTACTTAGGGCTGTTGATGAAGCCATTGAGTTGAAAAAATTGATGGTTGAGAAGGGATTGACACCTGATAGGTATACATATTCAGTACTAATTGATGGATTGTGCAGACAGAAGAGATCAGAAGAAGCAAAATCTGTATTGAACGAGATGTATGATATAGGTTTGAATCCTGACCGCACCATGTACATTGCTTTGATTGATGGATTCTTAAAAGAAAATAACGTGGATAAGGCCCTCAGGATCAAAGAAGAGATGGTCGCTCGAGGAGTTAAGTTGTGCGGTGTCACATATAATATGGAGAAGGCAAAATCTCTTTTGAATAAGATGAATACTATGGGAATTGAACCTAATACCCAGACATATAACTATTTAATTGATGGGTACTGCCGGGAGCAAAATGTAAACAAGGCTTATGCATTACTTAATGAGATGAAGCAAAGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

373

Amino Acids

42.99

Weight (kDa)

8.49

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	171 - 216	7.2e-08	PPR repeat family
PPR_long	PF17177	190 - 317	1.2e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	230 - 261	2.7e-09	PPR repeat family
PPR_1	PF12854	243 - 275	2.1e-10	PPR repeat
PPR	PF01535	250 - 279	1.5e-06	PPR repeat
PPR_2	PF13041	282 - 323	9.2e-07	PPR repeat family
PPR_2	PF13041	323 - 355	5.2e-09	PPR repeat family
PPR_1	PF12854	337 - 370	1e-12	PPR repeat
PPR_2	PF13041	345 - 372	4.1e-08	PPR repeat family
PPR	PF01535	345 - 372	1.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	749
AciI	CCGC	2 cut(s)	850, 954
AclWI	GGATC	1 cut(s)	923
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	4 cut(s)	142, 762, 860, 1058
AgsI	TTSAA	7 cut(s)	529, 541, 709, 817, 841, 994, 1019
AjnI	CCWGG	1 cut(s)	332
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	3 cut(s)	11, 289, 604
AluI	AGCT	3 cut(s)	11, 289, 604
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	923
Ama87I	CYCGRG	1 cut(s)	936
AoxI	GGCC	1 cut(s)	906
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	1 cut(s)	241
AseI	ATTAAT	1 cut(s)	423
AspS9I	GGNCC	3 cut(s)	73, 330, 907
AsuC2I	CCSGG	1 cut(s)	1064
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	936
AvaII	GGWCC	2 cut(s)	73, 330
AxyI	CCTNAGG	1 cut(s)	911
BaeGI	GKGCMC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	7 cut(s)	430, 572, 712, 764, 869, 922, 1046
BciT130I	CCWGG	1 cut(s)	334
BclI	TGATCA	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	1064
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmcAI	AGTACT	1 cut(s)	762
Bme1390I	CCNGG	2 cut(s)	334, 1064
Bme18I	GGWCC	2 cut(s)	73, 330
BmeT110I	CYCGRG	1 cut(s)	936
BmgT120I	GGNCC	3 cut(s)	73, 330, 907
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	334, 1064
BpuMI	CCSGG	1 cut(s)	1064
BsaJI	CCNNGG	1 cut(s)	304
Bse118I	RCCGGY	1 cut(s)	340
Bse21I	CCTNAGG	1 cut(s)	911
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	4 cut(s)	121, 558, 588, 661
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	1 cut(s)	925
BseRI	GAGGAG	1 cut(s)	954
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	445
BsgI	GTGCAG	1 cut(s)	799
BshFI	GGCC	1 cut(s)	908
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	936
BsiSI	CCGG	2 cut(s)	341, 1063
BsmI	GAATGC	2 cut(s)	247, 515
BsnI	GGCC	1 cut(s)	908
BsoBI	CYCGRG	1 cut(s)	936
Bsp1286I	GDGCHC	2 cut(s)	223, 237
Bsp1407I	TGTACA	1 cut(s)	858
Bsp143I	GATC	3 cut(s)	630, 791, 915
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	2 cut(s)	850, 954
BspANI	GGCC	1 cut(s)	908
BspCNI	CTCAG	1 cut(s)	924
BspLI	GGNNCC	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	86
BspPI	GGATC	1 cut(s)	923
BsrDI	GCAATG	1 cut(s)	861
BsrFI	RCCGGY	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	858
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	3 cut(s)	630, 791, 915
BssNAI	GTATAC	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	304
Bst1107I	GTATAC	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	782, 918
BstAUI	TGTACA	1 cut(s)	858
BstC8I	GCNNGC	2 cut(s)	300, 342
BstDEI	CTNAG	3 cut(s)	594, 680, 911
BstDSI	CCRYGG	1 cut(s)	304
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	4 cut(s)	121, 558, 588, 661
BstKTI	GATC	3 cut(s)	633, 794, 918
BstMBI	GATC	3 cut(s)	630, 791, 915
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	334
BstNSI	RCATGY	1 cut(s)	302
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	332, 1062
BstSFI	CTRYAG	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	445
BstZ17I	GTATAC	1 cut(s)	750
Bsu36I	CCTNAGG	1 cut(s)	911
BsuRI	GGCC	1 cut(s)	908
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	4 cut(s)	121, 558, 588, 661
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	300, 342
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	73, 330, 907
Csp6I	GTAC	4 cut(s)	141, 761, 859, 1057
CviAII	CATG	4 cut(s)	17, 299, 305, 856
CviQI	GTAC	4 cut(s)	141, 761, 859, 1057
DdeI	CTNAG	3 cut(s)	594, 680, 911
DpnI	GATC	3 cut(s)	632, 793, 917
DpnII	GATC	3 cut(s)	630, 791, 915
Eam1104I	CTCTTC	2 cut(s)	782, 918
EarI	CTCTTC	2 cut(s)	782, 918
Eco130I	CCWWGG	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	73, 330
Eco57I	CTGAAG	1 cut(s)	170
Eco81I	CCTNAGG	1 cut(s)	911
Eco88I	CYCGRG	1 cut(s)	936
Eco91I	GGTNACC	1 cut(s)	179
EcoO109I	RGGNCCY	2 cut(s)	330, 907
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	1093
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	4 cut(s)	20, 302, 308, 859
FatI	CATG	4 cut(s)	16, 298, 304, 855
FbaI	TGATCA	1 cut(s)	630
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	4 cut(s)	128, 565, 595, 668
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	908
HapII	CCGG	2 cut(s)	341, 1063
Hin1II	CATG	4 cut(s)	20, 302, 308, 859
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	4 cut(s)	67, 170, 841, 879
HpaII	CCGG	2 cut(s)	341, 1063
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	4 cut(s)	76, 432, 750, 1078
Hpy188I	TCNGA	5 cut(s)	39, 97, 150, 397, 796
Hpy188III	TCNNGA	3 cut(s)	565, 845, 913
Hpy8I	GTNNAC	4 cut(s)	76, 432, 750, 1078
HpyAV	CCTTC	3 cut(s)	535, 721, 970
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	897
HpyCH4V	TGCA	5 cut(s)	84, 247, 638, 780, 1091
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	3 cut(s)	594, 680, 911
HpySE526I	ACGT	1 cut(s)	897
Hsp92II	CATG	4 cut(s)	20, 302, 308, 859
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	630
Kzo9I	GATC	3 cut(s)	630, 791, 915
LmnI	GCTCC	2 cut(s)	240, 1066
Lsp1109I	GCAGC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	1 cut(s)	897
MaeIII	GTNAC	2 cut(s)	179, 958
MalI	GATC	3 cut(s)	632, 793, 917
MboI	GATC	3 cut(s)	630, 791, 915
MboII	GAAGA	3 cut(s)	799, 809, 935
MhlI	GDGCHC	2 cut(s)	223, 237
MluCI	AATT	7 cut(s)	241, 280, 517, 713, 765, 1014, 1047
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	9 cut(s)	106, 123, 382, 448, 549, 583, 666, 920, 932
Mph1103I	ATGCAT	1 cut(s)	1093
MroNI	GCCGGC	1 cut(s)	340
MseI	TTAA	6 cut(s)	197, 423, 884, 945, 1046, 1098
MslI	CAYNNNNRTG	1 cut(s)	303
MspI	CCGG	2 cut(s)	341, 1063
MspR9I	CCNGG	2 cut(s)	334, 1064
Mva1269I	GAATGC	2 cut(s)	247, 515
MvaI	CCWGG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	295
NaeI	GCCGGC	1 cut(s)	342
NciI	CCSGG	1 cut(s)	1064
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	3 cut(s)	630, 791, 915
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	4 cut(s)	20, 302, 308, 859
NlaIV	GGNNCC	1 cut(s)	74
NmeAIII	GCCGAG	1 cut(s)	525
NmuCI	GTSAC	2 cut(s)	179, 958
NsiI	ATGCAT	1 cut(s)	1093
NspI	RCATGY	1 cut(s)	302
PaeI	GCATGC	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	936
PctI	GAATGC	2 cut(s)	247, 515
PdiI	GCCGGC	1 cut(s)	342
PfeI	GAWTC	3 cut(s)	67, 841, 879
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	330
PshBI	ATTAAT	1 cut(s)	423
PsiI	TTATAA	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	332
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	3 cut(s)	73, 330, 907
PspPPI	RGGWCCY	1 cut(s)	330
PspXI	VCTCGAGB	1 cut(s)	936
PstI	CTGCAG	1 cut(s)	86
RsaI	GTAC	4 cut(s)	142, 762, 860, 1058
RsaNI	GTAC	4 cut(s)	141, 761, 859, 1057
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	6 cut(s)	197, 423, 884, 945, 1046, 1098
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	3 cut(s)	630, 791, 915
Sau96I	GGNCC	3 cut(s)	73, 330, 907
ScaI	AGTACT	1 cut(s)	762
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	334, 1064
SduI	GDGCHC	2 cut(s)	223, 237
SfcI	CTRYAG	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	936
SinI	GGWCC	2 cut(s)	73, 330
SlaI	CTCGAG	1 cut(s)	936
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	936
SmoI	CTYRAG	1 cut(s)	936
SphI	GCATGC	1 cut(s)	302
Sse9I	AATT	7 cut(s)	241, 280, 517, 713, 765, 1014, 1047
SsiI	CCGC	2 cut(s)	850, 954
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	2 cut(s)	332, 1062
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	900
TaqI	TCGA	2 cut(s)	257, 937
TasI	AATT	7 cut(s)	241, 280, 517, 713, 765, 1014, 1047
TatI	WGTACW	2 cut(s)	760, 858
TfiI	GAWTC	3 cut(s)	67, 841, 879
Tru1I	TTAA	6 cut(s)	197, 423, 884, 945, 1046, 1098
Tru9I	TTAA	6 cut(s)	197, 423, 884, 945, 1046, 1098
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	179, 958
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	2 cut(s)	179, 958
TspDTI	ATGAA	4 cut(s)	135, 708, 1016, 1121
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	73, 330
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	1 cut(s)	241
XceI	RCATGY	1 cut(s)	302
XhoI	CTCGAG	1 cut(s)	936
XmiI	GTMKAC	1 cut(s)	749
XspI	CTAG	1 cut(s)	605
ZrmI	AGTACT	1 cut(s)	762
Zsp2I	ATGCAT	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.