Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Forward (+)

5384567 .. 5388583

Gene Structure 4017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09340.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2586 bp

ATGTGGTTCGATCGGTTCTGCAGCAACACCATCAGGTTGGGAGGTGGGTTGTATGAGGCTGCTGATGTGTTTTTGGGTGTTAAGAGTGTTGGGATTATGCCGCGGTTGGAGTGCTGTAATGCTCTGTTGAATGAGTTGTTGAAGGGTAATAGGATGAATCTGTTCTGGAAAGTGTATGATGGGATGGTAGAGGCTAAGATTGAGCCGGATTTTTACACTTACAGTAATGTGATCAATGCACATTGTAAGTTTGGGGATGTTAGGGAGGGTAAGAGGGTGCTGTTTGAGATGGTAGAGAAGGGTTGTAATCCGAATTTGAGTACCTTCAATGTGGTGATTGATGGGTTGTGTAGAAGTAGGGATGTTGATGAAGCCATTGAGTTGAAGAAGTTGATGGTTGTGAAGGGATTGACCCCCGATAGGTATGCTTATTCGGTACTGGTTGATGGATTATGCAGACAGAAGAGATCAGAAGAAGCGAAGTTGGTACTGAACAAGATGATTGATATAGGTTTGAATCCTGACCGCAACTTGTACATTACTTTGATTGACGGATTCTTGAAAGAAAGTAAGGTGGATAAGGCCCTGAGGATCAAAGAAGAGATGGTTGCCCGAGAAGTTAAGTTGTGTGGTGTCACATATAATGTGATTTTTGCAGGGATCTGTAAAATAGGTAAGATGGAGAAGGCAGAAGGTCTCTTGAATGAGATGAATGCTATGGGAATTGAACCTAATACCCAGACATATAACTATTTAATTGACGGGTACTGCCGGGAGCAAAATGTAAACAAGGCTTATGCATTACTTAATGAGATGAAGCAAAGGAACTTGGCACCCAATGAGGTAACTTGTGGAGTGGTAATAAATGCTCTATGCCGGTCTGGAGATCTAGAAGGGGCTAATAATGTTTTGAAGGTAATGATCACTGGGGGTTTGAAACCTGGTAGAGTTATCTACACAACTCTAATAAAAGGTCATCTACAAGAAAGAAAATCTGAAGAGGCGATAAAATTATTGAAGGAAATGAGTGAAACAGGTGTCACTCCTGATGTCTTTTGCTACAATTCTCTCATAATTGGCCTGTGCAAAGCTGGGAAATTCGATGAAGCCAACACTTATTTGGTGGAAATGGTTGACAGAGGACTAAAGCCTAATGCATATACTTATGGGGCTTTTGTTCATGGGTACTGTAAGGAGAAGGAAATGCAACTAGCGAATAGGTATTTCAAGGAGATGCTAGGTTGTGGTATAGCTCCTAGTGATTTTATCTATAACGCCTTGATTGAAGGACATTGTAAAGAGGGTAACTTGGTAGAAGCTCTTTCAACATTTAGATCCATGTTTGGACGAGGGGTGACCCCAGACATCAGAACATACAGTGTCATCATTCATGGTCTCTCCAGGGGAGGAAAACTTGAGGAAGCAATGGGGATATTCTCTGAGCTCCTTGGCAGGAATTTGGTTCCAGATGTATTTACATACAGTTCTCTCATATCTGGCTTTTGCAAACAGGGAAATGCAGAGAAGGCTTTCCACCTTCTTGAACAAATGTCTCAGAGAGGTATTAAACCAAACATCGTCACTTATAATGGCTTGATTAATGGATTGTGCAAGTCTGGCGACATTGACAGAGCCAGAAAACTATTTAATGCAATTCCAGGAAAGGGTTTGACTCCTAATGCTGTGACTTATGCTACAATGATGGACGGGTATAGCAAATCTGGCAAATTAATTGAGGCTTTACAACTATTAGATGAGATGCAACTCCATGGAATTCCTACTGATAGCTTCATTTACTGCACCCTGATTGATGGGTTCTGCATGACTGGTGATCTACACAAGGCCTCGTCTTTATTTAATGAAATGGTAGATAAGGGTCTTGATGCCACTTCTGCTTTCAATGCATTGATCGACGGCTTCTGTAAATTGGGGATGCATATTGAAGCTACACAGTTAGTTGAAGATATGGGGGGTAAACATGTGACACCAAATCATATTACATACACGATTCTGATCGATTCTCTCTGCAAAAAGGGCCTGTTGAGGGAAGCAGAACAGCTATTTGTGGAAATGCAGGACAGGAATCTGCAGCCCAGTGTTGTAACATACACTTCACTTTTACAGGGCTATGACAGCACAGGGAGCAGATTAAAGATGTTTTCTCTTTTTGAGGAAATGAGAGCAAGTGGGATAAAACCTGATGAAATAACCTATGGTCTGATGGTCGAGGCTTGTTGCAAAGAAGGTGATGTGGTAAAGTCTCTAAAACTGATGGATGAAAGTTTGGTCAATAGTGTTAATTTGAACAGTGTTGTGGTAGATGCTCTGGCAAATGCCATATTCCAAAAGGCAGAATTTTCGGAAGTGATGAAGTCCCTTGATGAAATGGGAGAGCAAGGATTTGTGCTCAGTCTTGCTACATGTAAAACATTAGTTCACGGATTTTTCTACAAATCAGGGAATACAGAGAAGGCAGCCAGGATTCTCGAGAGCATGCTCAGGCTTGGATGGGTTTCAGAGTCCACAAGTATGAGCGACTTAATTAATGATGAAGATCAAAGTGAGGCTAGCTCTGGGATCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

862

Amino Acids

95.59

Weight (kDa)

5.65

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	196 - 241	9e-10	PPR repeat family
PPR_long	PF17177	197 - 307	1.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	216 - 272	2.2e-08	Pentatricopeptide repeat domain
PPR	PF01535	230 - 260	1.7e-06	PPR repeat
PPR_2	PF13041	232 - 276	4.9e-11	PPR repeat family
PPR_1	PF12854	258 - 290	4e-10	PPR repeat
PPR	PF01535	265 - 295	6.2e-06	PPR repeat
PPR_2	PF13041	266 - 311	4.5e-13	PPR repeat family
PPR_1	PF12854	293 - 325	1e-06	PPR repeat
PPR_3	PF13812	355 - 414	4.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	370 - 416	3.5e-16	PPR repeat family
PPR_1	PF12854	398 - 431	3.5e-12	PPR repeat
PPR_2	PF13041	402 - 451	2.5e-17	PPR repeat family
PPR	PF01535	406 - 434	8.9e-07	PPR repeat
PPR_3	PF13812	469 - 516	7.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	472 - 521	9.7e-15	PPR repeat family
PPR_1	PF12854	504 - 535	3.1e-09	PPR repeat
PPR_2	PF13041	507 - 556	4.6e-15	PPR repeat family
PPR	PF01535	511 - 540	7.7e-07	PPR repeat
PPR_3	PF13812	533 - 587	1.6e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	538 - 570	5.1e-06	PPR repeat
PPR_long	PF17177	561 - 675	5.8e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	574 - 605	3.7e-07	PPR repeat
PPR_2	PF13041	577 - 625	5.8e-14	PPR repeat family
PPR	PF01535	581 - 610	2.2e-06	PPR repeat
PPR_1	PF12854	608 - 639	9.6e-07	PPR repeat
PPR_2	PF13041	620 - 661	1.4e-10	PPR repeat family
PPR_3	PF13812	636 - 692	2.7e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	643 - 676	4.6e-13	PPR repeat
PPR_2	PF13041	647 - 696	4.2e-20	PPR repeat family
PPR	PF01535	650 - 680	5.5e-08	PPR repeat
PPR_long	PF17177	664 - 751	4e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	671 - 729	6.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	678 - 708	1.1e-12	PPR repeat
PPR_2	PF13041	682 - 731	1.2e-15	PPR repeat family
PPR	PF01535	685 - 714	1.6e-06	PPR repeat
PPR_1	PF12854	713 - 746	3.3e-09	PPR repeat
PPR_2	PF13041	717 - 765	1.2e-12	PPR repeat family
PPR	PF01535	720 - 750	7.4e-08	PPR repeat
PPR_1	PF12854	749 - 781	3.6e-08	PPR repeat
PPR_2	PF13041	753 - 787	8.4e-07	PPR repeat family
PPR	PF01535	756 - 785	3.5e-07	PPR repeat
PPR_long	PF17177	767 - 918	9.3e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	789 - 835	4.5e-13	PPR repeat family
PPR_1	PF12854	818 - 850	1.1e-12	PPR repeat
PPR	PF01535	824 - 853	2.7e-08	PPR repeat
PPR_2	PF13041	826 - 868	4.4e-13	PPR repeat family
PPR_3	PF13812	845 - 905	3.7e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	876 - 905	8.5e-07	PPR repeat family
PPR_1	PF12854	888 - 918	3.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1587
AccB1I	GGYRCC	1 cut(s)	832
AccII	CGCG	1 cut(s)	103
AciI	CCGC	3 cut(s)	101, 103, 526
AclWI	GGATC	4 cut(s)	599, 668, 1329, 2585
AcsI	RAATTY	5 cut(s)	313, 1097, 1456, 1773, 2354
AcuI	CTGAAG	1 cut(s)	1017
AfaI	GTAC	6 cut(s)	322, 438, 489, 536, 767, 1187
AfiI	CCNNNNNNNGG	3 cut(s)	420, 1664, 2044
AflIII	ACRYGT	2 cut(s)	1978, 2420
AjnI	CCWGG	4 cut(s)	940, 1400, 1657, 2477
AluBI	AGCT	8 cut(s)	1091, 1253, 1319, 1444, 1788, 1946, 2059, 2571
AluI	AGCT	8 cut(s)	1091, 1253, 1319, 1444, 1788, 1946, 2059, 2571
Alw21I	GWGCWC	2 cut(s)	1446, 2409
Alw26I	GTCTC	4 cut(s)	701, 1400, 1557, 2265
AlwI	GGATC	4 cut(s)	599, 668, 1329, 2585
Ama87I	CYCGRG	2 cut(s)	612, 2486
AoxI	GGCC	4 cut(s)	582, 1078, 1842, 2035
ApeKI	GCWGC	4 cut(s)	21, 59, 2089, 2474
ApoI	RAATTY	5 cut(s)	313, 1097, 1456, 1773, 2354
AseI	ATTAAT	3 cut(s)	1599, 1730, 2544
Asp700I	GAANNNNTTC	2 cut(s)	161, 1529
AspS9I	GGNCC	2 cut(s)	583, 2035
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	4 cut(s)	346, 1366, 1841, 2258
AsuNHI	GCTAGC	1 cut(s)	2567
AvaI	CYCGRG	2 cut(s)	612, 2486
AxyI	CCTNAGG	1 cut(s)	587
BanI	GGYRCC	1 cut(s)	832
BanII	GRGCYC	1 cut(s)	1446
Bbv12I	GWGCWC	2 cut(s)	1446, 2409
BbvI	GCAGC	4 cut(s)	33, 46, 2101, 2486
BceAI	ACGGC	1 cut(s)	1930
BcgI	CGANNNNNNTGC	4 cut(s)	407, 441, 2340, 2374
BciT130I	CCWGG	4 cut(s)	942, 1402, 1659, 2479
BclI	TGATCA	2 cut(s)	231, 921
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	4 cut(s)	701, 1400, 1557, 2265
BfaI	CTAG	5 cut(s)	890, 1211, 1238, 1257, 2568
BfmI	CTRYAG	2 cut(s)	19, 2087
BglII	AGATCT	1 cut(s)	886
BisI	GCNGC	5 cut(s)	22, 60, 101, 2090, 2475
BlsI	GCNGC	5 cut(s)	23, 61, 102, 2091, 2476
Bme1390I	CCNGG	5 cut(s)	773, 942, 1402, 1659, 2479
BmeT110I	CYCGRG	2 cut(s)	612, 2486
BmgT120I	GGNCC	2 cut(s)	583, 2035
BmiI	GGNNCC	2 cut(s)	834, 1464
BmrFI	CCNGG	5 cut(s)	773, 942, 1402, 1659, 2479
BmrI	ACTGGG	2 cut(s)	936, 2088
BmsI	GCATC	5 cut(s)	1224, 1749, 1873, 1923, 2311
BmtI	GCTAGC	1 cut(s)	2571
BmuI	ACTGGG	2 cut(s)	936, 2088
BplI	GAGNNNNNCTC	1 cut(s)	2555
BpmI	CTGGAG	2 cut(s)	903, 1384
Bpu10I	CCTNAGC	1 cut(s)	2498
BpuEI	CTTGAG	1 cut(s)	1436
BpuMI	CCSGG	1 cut(s)	773
Bsa29I	ATCGAT	1 cut(s)	2016
BsaBI	GATNNNNATC	2 cut(s)	2012, 2553
BsaI	GGTCTC	2 cut(s)	701, 1400
BsaJI	CCNNGG	4 cut(s)	101, 1401, 1447, 1768
Bsc4I	CCNNNNNNNGG	3 cut(s)	420, 1664, 2044
Bse118I	RCCGGY	1 cut(s)	876
Bse1I	ACTGG	4 cut(s)	444, 931, 1831, 2094
Bse21I	CCTNAGG	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	1431
Bse8I	GATNNNNATC	2 cut(s)	2012, 2553
BseBI	CCWGG	4 cut(s)	942, 1402, 1659, 2479
BseCI	ATCGAT	1 cut(s)	2016
BseDI	CCNNGG	4 cut(s)	101, 1401, 1447, 1768
BseGI	GGATG	7 cut(s)	159, 189, 262, 367, 1938, 2281, 2513
BseJI	GATNNNNATC	2 cut(s)	2012, 2553
BseLI	CCNNNNNNNGG	3 cut(s)	420, 1664, 2044
BseMI	GCAATG	1 cut(s)	1431
BseMII	CTCAG	5 cut(s)	578, 1431, 1568, 2422, 2512
BseNI	ACTGG	4 cut(s)	444, 931, 1831, 2094
BseXI	GCAGC	4 cut(s)	33, 46, 2101, 2486
BseYI	CCCAGC	1 cut(s)	1091
BsgI	GTGCAG	1 cut(s)	1783
Bsh1236I	CGCG	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	4 cut(s)	584, 1080, 1844, 2037
BshNI	GGYRCC	1 cut(s)	832
BshVI	ATCGAT	1 cut(s)	2016
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	2 cut(s)	1446, 2409
BsiHKCI	CYCGRG	2 cut(s)	612, 2486
BsiSI	CCGG	3 cut(s)	206, 772, 877
BslFI	GGGAC	1 cut(s)	2359
BslI	CCNNNNNNNGG	3 cut(s)	420, 1664, 2044
BsmAI	GTCTC	4 cut(s)	701, 1400, 1557, 2265
BsmFI	GGGAC	1 cut(s)	2359
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	4 cut(s)	584, 1080, 1844, 2037
Bso31I	GGTCTC	2 cut(s)	701, 1400
BsoBI	CYCGRG	2 cut(s)	612, 2486
Bsp1286I	GDGCHC	2 cut(s)	1446, 2409
Bsp1407I	TGTACA	1 cut(s)	534
Bsp19I	CCATGG	1 cut(s)	1768
BspACI	CCGC	3 cut(s)	101, 103, 526
BspANI	GGCC	4 cut(s)	584, 1080, 1844, 2037
BspCNI	CTCAG	5 cut(s)	579, 1432, 1567, 2421, 2511
BspDI	ATCGAT	1 cut(s)	2016
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	834, 1464
BspMAI	CTGCAG	2 cut(s)	23, 2091
BspOI	GCTAGC	1 cut(s)	2571
BspPI	GGATC	4 cut(s)	599, 668, 1329, 2585
BspT107I	GGYRCC	1 cut(s)	832
BspTNI	GGTCTC	2 cut(s)	701, 1400
BsrDI	GCAATG	1 cut(s)	1431
BsrFI	RCCGGY	1 cut(s)	876
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	4 cut(s)	444, 931, 1831, 2094
BssAI	RCCGGY	1 cut(s)	876
BssECI	CCNNGG	4 cut(s)	101, 1401, 1447, 1768
BssT1I	CCWWGG	2 cut(s)	1447, 1768
Bst2UI	CCWGG	4 cut(s)	942, 1402, 1659, 2479
Bst4CI	ACNGT	6 cut(s)	224, 1190, 1379, 1484, 1953, 2309
Bst6I	CTCTTC	3 cut(s)	458, 594, 993
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	2 cut(s)	2495, 2569
BstDEI	CTNAG	6 cut(s)	195, 587, 1440, 1554, 2408, 2498
BstDSI	CCRYGG	2 cut(s)	101, 1768
BstEII	GGTNACC	1 cut(s)	1354
BstF5I	GGATG	7 cut(s)	159, 189, 262, 367, 1938, 2281, 2513
BstFNI	CGCG	1 cut(s)	103
BstMAI	GTCTC	4 cut(s)	701, 1400, 1557, 2265
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	8 cut(s)	1526, 1617, 1722, 1892, 1901, 2034, 2133, 2142
BstNI	CCWGG	4 cut(s)	942, 1402, 1659, 2479
BstNSI	RCATGY	3 cut(s)	1982, 2424, 2497
BstPI	GGTNACC	1 cut(s)	1354
BstSCI	CCNGG	5 cut(s)	771, 940, 1400, 1657, 2477
BstSFI	CTRYAG	2 cut(s)	19, 2087
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	4 cut(s)	33, 46, 2101, 2486
BstX2I	RGATCY	4 cut(s)	660, 886, 1334, 2577
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	4 cut(s)	660, 886, 1334, 2577
Bsu15I	ATCGAT	1 cut(s)	2016
Bsu36I	CCTNAGG	1 cut(s)	587
BsuRI	GGCC	4 cut(s)	584, 1080, 1844, 2037
BsuTUI	ATCGAT	1 cut(s)	2016
BtgI	CCRYGG	2 cut(s)	101, 1768
BtsCI	GGATG	7 cut(s)	159, 189, 262, 367, 1938, 2281, 2513
BtsIMutI	CAGTG	4 cut(s)	924, 1384, 2101, 2314
Cac8I	GCNNGC	2 cut(s)	2495, 2569
Cfr10I	RCCGGY	1 cut(s)	876
Cfr13I	GGNCC	2 cut(s)	583, 2035
Cfr42I	CCGCGG	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	2016
CsiI	ACCWGGT	1 cut(s)	940
Csp6I	GTAC	6 cut(s)	321, 437, 488, 535, 766, 1186
CviAII	CATG	8 cut(s)	1181, 1339, 1391, 1769, 1822, 1979, 2421, 2494
CviQI	GTAC	6 cut(s)	321, 437, 488, 535, 766, 1186
DdeI	CTNAG	6 cut(s)	195, 587, 1440, 1554, 2408, 2498
Eam1104I	CTCTTC	3 cut(s)	458, 594, 993
EarI	CTCTTC	3 cut(s)	458, 594, 993
Ecl136II	GAGCTC	1 cut(s)	1444
Eco130I	CCWWGG	2 cut(s)	1447, 1768
Eco147I	AGGCCT	1 cut(s)	1844
Eco24I	GRGCYC	1 cut(s)	1446
Eco31I	GGTCTC	2 cut(s)	701, 1400
Eco53kI	GAGCTC	1 cut(s)	1444
Eco57I	CTGAAG	1 cut(s)	1017
Eco81I	CCTNAGG	1 cut(s)	587
Eco88I	CYCGRG	2 cut(s)	612, 2486
Eco91I	GGTNACC	1 cut(s)	1354
EcoICRI	GAGCTC	1 cut(s)	1444
EcoO109I	RGGNCCY	2 cut(s)	583, 2035
EcoO65I	GGTNACC	1 cut(s)	1354
EcoRI	GAATTC	1 cut(s)	1773
EcoRII	CCWGG	4 cut(s)	940, 1400, 1657, 2477
EcoT14I	CCWWGG	2 cut(s)	1447, 1768
EcoT22I	ATGCAT	4 cut(s)	802, 1159, 1906, 1938
EcoT38I	GRGCYC	1 cut(s)	1446
ErhI	CCWWGG	2 cut(s)	1447, 1768
FaeI	CATG	8 cut(s)	1184, 1342, 1394, 1772, 1825, 1982, 2424, 2497
FaqI	GGGAC	1 cut(s)	2359
FatI	CATG	8 cut(s)	1180, 1338, 1390, 1768, 1821, 1978, 2420, 2493
FbaI	TGATCA	2 cut(s)	231, 921
Fnu4HI	GCNGC	5 cut(s)	22, 60, 101, 2090, 2475
FokI	GGATG	7 cut(s)	166, 196, 269, 374, 1945, 2288, 2520
FriOI	GRGCYC	1 cut(s)	1446
Fsp4HI	GCNGC	5 cut(s)	22, 60, 101, 2090, 2475
FspBI	CTAG	5 cut(s)	890, 1211, 1238, 1257, 2568
GluI	GCNGC	5 cut(s)	22, 60, 101, 2090, 2475
GsaI	CCCAGC	1 cut(s)	1095
GsuI	CTGGAG	2 cut(s)	903, 1384
HaeIII	GGCC	4 cut(s)	584, 1080, 1844, 2037
HapII	CCGG	3 cut(s)	206, 772, 877
Hin1II	CATG	8 cut(s)	1184, 1342, 1394, 1772, 1825, 1982, 2424, 2497
HincII	GTYRAC	1 cut(s)	1135
HindII	GTYRAC	1 cut(s)	1135
HinfI	GANTC	9 cut(s)	157, 517, 555, 1672, 2008, 2018, 2083, 2482, 2519
HpaII	CCGG	3 cut(s)	206, 772, 877
HphI	GGTGA	4 cut(s)	346, 1366, 1841, 2258
Hpy166II	GTNNAC	5 cut(s)	787, 1135, 1976, 2437, 2523
Hpy8I	GTNNAC	5 cut(s)	787, 1135, 1976, 2437, 2523
Hpy99I	CGWCG	1 cut(s)	1916
HpyCH4III	ACNGT	6 cut(s)	224, 1190, 1379, 1484, 1953, 2309
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1526, 1617, 1722, 1892, 1901, 2034, 2133, 2142
HpyF3I	CTNAG	6 cut(s)	195, 587, 1440, 1554, 2408, 2498
Hsp92II	CATG	8 cut(s)	1184, 1342, 1394, 1772, 1825, 1982, 2424, 2497
Ksp22I	TGATCA	2 cut(s)	231, 921
KspI	CCGCGG	1 cut(s)	104
LmnI	GCTCC	4 cut(s)	775, 1258, 1449, 2142
Lsp1109I	GCAGC	4 cut(s)	33, 46, 2101, 2486
LweI	GCATC	5 cut(s)	1224, 1749, 1873, 1923, 2311
MabI	ACCWGGT	1 cut(s)	940
MaeI	CTAG	5 cut(s)	890, 1211, 1238, 1257, 2568
MaeIII	GTNAC	9 cut(s)	634, 844, 1039, 1304, 1354, 1579, 1684, 1981, 2101
MboII	GAAGA	7 cut(s)	397, 475, 485, 611, 1010, 1973, 2564
MflI	RGATCY	4 cut(s)	660, 886, 1334, 2577
MhlI	GDGCHC	2 cut(s)	1446, 2409
MlyI	GAGTC	2 cut(s)	1666, 2528
MmeI	TCCRAC	1 cut(s)	87
Mph1103I	ATGCAT	4 cut(s)	802, 1159, 1906, 1938
MroXI	GAANNNNTTC	2 cut(s)	161, 1529
MslI	CAYNNNNRTG	1 cut(s)	2528
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	3 cut(s)	206, 772, 877
MspR9I	CCNGG	5 cut(s)	773, 942, 1402, 1659, 2479
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	4 cut(s)	942, 1402, 1659, 2479
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	8 cut(s)	1526, 1617, 1722, 1892, 1901, 2034, 2133, 2142
NciI	CCSGG	1 cut(s)	773
NcoI	CCATGG	1 cut(s)	1768
NheI	GCTAGC	1 cut(s)	2567
NlaIII	CATG	8 cut(s)	1184, 1342, 1394, 1772, 1825, 1982, 2424, 2497
NlaIV	GGNNCC	2 cut(s)	834, 1464
NmuCI	GTSAC	6 cut(s)	634, 1039, 1354, 1579, 1684, 1981
NsiI	ATGCAT	4 cut(s)	802, 1159, 1906, 1938
NspI	RCATGY	3 cut(s)	1982, 2424, 2497
PacI	TTAATTAA	1 cut(s)	2544
PaeI	GCATGC	1 cut(s)	2497
PaeR7I	CTCGAG	1 cut(s)	2486
PceI	AGGCCT	1 cut(s)	1844
PciI	ACATGT	2 cut(s)	1978, 2420
PctI	GAATGC	1 cut(s)	718
PdmI	GAANNNNTTC	2 cut(s)	161, 1529
PfeI	GAWTC	7 cut(s)	157, 517, 555, 2008, 2018, 2083, 2482
PfoI	TCCNGGA	1 cut(s)	1657
PkrI	GCNGC	5 cut(s)	23, 61, 102, 2091, 2476
Ple19I	CGATCG	1 cut(s)	13
PleI	GAGTC	2 cut(s)	1666, 2527
PpsI	GAGTC	2 cut(s)	1666, 2527
PscI	ACATGT	2 cut(s)	1978, 2420
PshBI	ATTAAT	3 cut(s)	1599, 1730, 2544
PsiI	TTATAA	1 cut(s)	1587
Psp124BI	GAGCTC	1 cut(s)	1446
Psp6I	CCWGG	4 cut(s)	940, 1400, 1657, 2477
PspEI	GGTNACC	1 cut(s)	1354
PspFI	CCCAGC	1 cut(s)	1091
PspGI	CCWGG	4 cut(s)	940, 1400, 1657, 2477
PspN4I	GGNNCC	2 cut(s)	834, 1464
PspPI	GGNCC	2 cut(s)	583, 2035
PstI	CTGCAG	2 cut(s)	23, 2091
PsuI	RGATCY	4 cut(s)	660, 886, 1334, 2577
PvuI	CGATCG	1 cut(s)	13
RsaI	GTAC	6 cut(s)	322, 438, 489, 536, 767, 1187
RsaNI	GTAC	6 cut(s)	321, 437, 488, 535, 766, 1186
RseI	CAYNNNNRTG	1 cut(s)	2528
SacI	GAGCTC	1 cut(s)	1446
SacII	CCGCGG	1 cut(s)	104
SatI	GCNGC	5 cut(s)	22, 60, 101, 2090, 2475
Sau96I	GGNCC	2 cut(s)	583, 2035
SchI	GAGTC	2 cut(s)	1666, 2528
ScrFI	CCNGG	5 cut(s)	773, 942, 1402, 1659, 2479
SduI	GDGCHC	2 cut(s)	1446, 2409
SexAI	ACCWGGT	1 cut(s)	940
SfaNI	GCATC	5 cut(s)	1224, 1749, 1873, 1923, 2311
SfcI	CTRYAG	2 cut(s)	19, 2087
Sfr274I	CTCGAG	1 cut(s)	2486
Sfr303I	CCGCGG	1 cut(s)	104
SgrBI	CCGCGG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	2486
SmiMI	CAYNNNNRTG	1 cut(s)	2528
SmlI	CTYRAG	2 cut(s)	1415, 2486
SmoI	CTYRAG	2 cut(s)	1415, 2486
SphI	GCATGC	1 cut(s)	2497
SseBI	AGGCCT	1 cut(s)	1844
SsiI	CCGC	3 cut(s)	101, 103, 526
SspMI	CTAG	5 cut(s)	890, 1211, 1238, 1257, 2568
SstI	GAGCTC	1 cut(s)	1446
StuI	AGGCCT	1 cut(s)	1844
StyD4I	CCNGG	5 cut(s)	771, 940, 1400, 1657, 2477
StyI	CCWWGG	2 cut(s)	1447, 1768
TaaI	ACNGT	6 cut(s)	224, 1190, 1379, 1484, 1953, 2309
TaqI	TCGA	6 cut(s)	9, 1101, 1911, 2016, 2226, 2487
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	7 cut(s)	157, 517, 555, 2008, 2018, 2083, 2482
TscAI	CASTG	4 cut(s)	931, 1384, 2101, 2314
TseFI	GTSAC	6 cut(s)	634, 1039, 1354, 1579, 1684, 1981
TseI	GCWGC	4 cut(s)	21, 59, 2089, 2474
Tsp45I	GTSAC	6 cut(s)	634, 1039, 1354, 1579, 1684, 1981
TspGWI	ACGGA	2 cut(s)	567, 2454
TspRI	CASTG	4 cut(s)	931, 1384, 2101, 2314
VspI	ATTAAT	3 cut(s)	1599, 1730, 2544
XapI	RAATTY	5 cut(s)	313, 1097, 1456, 1773, 2354
XbaI	TCTAGA	1 cut(s)	889
XceI	RCATGY	3 cut(s)	1982, 2424, 2497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1117
XhoI	CTCGAG	1 cut(s)	2486
XmnI	GAANNNNTTC	2 cut(s)	161, 1529
XspI	CTAG	5 cut(s)	890, 1211, 1238, 1257, 2568
Zsp2I	ATGCAT	4 cut(s)	802, 1159, 1906, 1938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.