Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012137

Physical Location & Seq

Genomic Coordinates Forward (+)

37266350 .. 37270257

Gene Structure 3908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002628

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCATCTGAGGAATAACATAAGGGACAAGTGGTGCCTCCTCATCGCCGCCGACGACCTCTCCGGCCTCGTCCAAGTGCTCCGGTCCCACGCCCGCCCCGTCCGCTTCGTCAAGATCCCCGTCGCCGATAAGCTCCACTTGGTCTCCGGCGGCGACGACGCGGTTGTCAAGTACTCGGACGTCGCCGGCGAGACCACGATTTGCGACTTCCTAGGGCACAAGGACTACGTGCGCTGCGGCGATTGGTCCCCAAGTGATTCCAACATGTTCATCACTGGCTCGTATGATCACAAAGTGAAGCTCTGGGATGTGAGGGATAAGGATTCGAGCTCCGTGACGGAAGTGAATCACGGTAAGCCGGTGGAGGACGTGATGTTCTTGCCTTCCGGCAGGTTAATTGCGACGGACGGAGGAGATTCGGTGAAGATTTGGGATTTGATTGGAGGTGGGAAGTTGGTGTATTCAATGGAGAGCCATAACAAGACGGTGACTTCGATTTGTGTTGGGAAAGTTGGGAAGCTAAGTGGGGAAGGGGCTCACCAGTACAGGATTTTGAGTGTGGCATTGGATGGTTACATGAAGGTTTTCGATTACGCAAAAATGAAGGTTACTCATTCAATGAGGTTACCTGCGCCGCTCATGTTGAAGAAGTTGGGTTCTGGGAATGCTTTGGGTTTGGGGCCTGTGGCAGAGGAGCCACGGATTAGGGTCTTGAAGCCTACTAGTTTTCGGTATTTTCCGAGAGGGCAGTCAGAGAAGCTGTCTGAGAGAGGTTATCTGGTGATGAGGCCGAAGAAAGTGAAGTTGGGGGAGCATGATAAGCTGTTGAAGAAGTTTAGGCATAAGGAAGCTCTGGTGTCTGTGTTGGGGAGGACTAAGAATCCGGAGAATGCTGTGGCTGTGATGGAAGAATTGGTGTCGAGAAAGAAGTTGCTGAAATGTGTTTCGAATTTGGATTTGGAGCTTGGAATGTTGCTGATGTTTTTGCAGAGGTACTCGACCATGCCAAGGTACTCGAGGTTGTTGATGGGGTTGACAGAGAAGGTTATTGAGATGAGGGCTGACAACATTAGAGCTTCTACAGAGTTGAAGGGTCTTATTAGAAACATTAAATGTGCTGTCGAGGAGGAAATACGAATACAACAATCTTTGCAAGAGATACAGGGTCCTATTTCTGCTTTGTTGAGGATAACCGGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

402

Amino Acids

44.96

Weight (kDa)

9.56

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	23 - 205	1.6e-21	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	24 - 195	4.8e-09	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	25 - 145	1.1e-13	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	25 - 171	2.5e-12	CDC20/Fizzy WD40 domain
EIF3I	PF24805	27 - 135	1.3e-06	EIF3I
WD40_WDHD1_1st	PF24817	32 - 112	1e-05	WDHD1 first WD40 domain
WD40_Prp19	PF24814	35 - 140	6.1e-12	Prp19 WD40 domain
Beta-prop_EML	PF23409	36 - 187	1.5e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta	PF25391	43 - 178	1e-11	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	45 - 207	3e-15	THOC3 beta-propeller domain
Beta-prop_EIPR1	PF23609	67 - 159	2.7e-06	EIPR1 beta-propeller
WD40	PF00400	68 - 103	1.4e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	68 - 179	4.3e-08	WDR3 second beta-propeller domain
Beta-prop_RIG_2nd	PF23775	71 - 130	2.9e-07	RIG second beta-propeller
WD40_WDHD1_1st	PF24817	86 - 198	2.6e-06	WDHD1 first WD40 domain
WDR55	PF24796	86 - 203	3.2e-06	WDR55
UTP15_C	PF09384	257 - 393	9.6e-33	UTP15 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47990
fragaria_vesca	FvH4_5g25500
malus_domestica	MD03G1274200.v1.1 MD11G1296600.v1.1
prunus_persica	Prupe.1G201800_v2.0.a1 Prupe.1G201800_v2.0.a1
pyrus_communis	pycom03g21860
rosa_chinensis	RchiOBHm_Chr7g0215731
rosa_laevigata	RLG00000002628 RLG00000002630
rosa_multiflora	Rmu_sc0000898.1_g000015
rosa_roxburghii	Rroxscaffold_3G00243890
rosa_rugosa	Rorug07G0156300
rosa_samantha	Rh7AG293400 Rh7BG285700 Rh7CG313600 Rh7CG313800 Rh7DG296700
rosa_wichuraiana	Rw7G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AatII	GACGTC	1 cut(s)	183
Acc36I	ACCTGC	2 cut(s)	381, 637
AccB1I	GGYRCC	1 cut(s)	33
AccBSI	CCGCTC	1 cut(s)	637
AccII	CGCG	1 cut(s)	161
AccIII	TCCGGA	1 cut(s)	883
AciI	CCGC	7 cut(s)	48, 94, 103, 150, 161, 237, 635
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	949
AcyI	GRCGYC	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	295
AfaI	GTAC	4 cut(s)	173, 545, 995, 1013
AfiI	CCNNNNNNNGG	1 cut(s)	1008
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	6 cut(s)	465, 618, 646, 715, 829, 1090
AhlI	ACTAGT	1 cut(s)	722
AjiI	CACGTC	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	4 cut(s)	788, 820, 941, 973
AloI	GAACNNNNNNTCC	2 cut(s)	359, 391
AluBI	AGCT	9 cut(s)	133, 301, 330, 520, 760, 823, 851, 964, 1076
AluI	AGCT	9 cut(s)	133, 301, 330, 520, 760, 823, 851, 964, 1076
Alw21I	GWGCWC	2 cut(s)	81, 332
Alw26I	GTCTC	2 cut(s)	148, 185
AlwI	GGATC	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	1015
Aor13HI	TCCGGA	1 cut(s)	883
AoxI	GGCC	3 cut(s)	64, 680, 788
ApeKI	GCWGC	1 cut(s)	234
ApoI	RAATTY	1 cut(s)	949
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
Asp700I	GAANNNNTTC	1 cut(s)	584
AspA2I	CCTAGG	1 cut(s)	211
AspLEI	GCGC	2 cut(s)	234, 634
AspS9I	GGNCC	4 cut(s)	84, 246, 680, 1166
AsuHPI	GGTGA	4 cut(s)	433, 499, 530, 793
AsuII	TTCGAA	1 cut(s)	947
AvaI	CYCGRG	1 cut(s)	1015
AvaII	GGWCC	3 cut(s)	84, 246, 1166
AvrII	CCTAGG	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	33
BanII	GRGCYC	2 cut(s)	332, 538
Bbv12I	GWGCWC	2 cut(s)	81, 332
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	3 cut(s)	563, 898, 1021
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	148, 185
BcuI	ACTAGT	1 cut(s)	722
BfaI	CTAG	2 cut(s)	212, 723
BfmI	CTRYAG	1 cut(s)	1080
BfuAI	ACCTGC	2 cut(s)	381, 637
BisI	GCNGC	5 cut(s)	48, 151, 235, 238, 635
BlnI	CCTAGG	1 cut(s)	211
BlsI	GCNGC	5 cut(s)	49, 152, 236, 239, 636
BmcAI	AGTACT	1 cut(s)	173
Bme18I	GGWCC	3 cut(s)	84, 246, 1166
BmeT110I	CYCGRG	1 cut(s)	1015
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	4 cut(s)	84, 246, 680, 1166
BmiI	GGNNCC	6 cut(s)	35, 86, 248, 681, 696, 1167
BmsI	GCATC	1 cut(s)	13
Bpu14I	TTCGAA	1 cut(s)	947
BsaAI	YACGTR	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	2 cut(s)	148, 185
BsaJI	CCNNGG	3 cut(s)	211, 698, 1007
BsaWI	WCCGGW	3 cut(s)	81, 883, 1193
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 128, 158, 405, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	1008
Bse118I	RCCGGY	2 cut(s)	185, 358
Bse1I	ACTGG	2 cut(s)	280, 541
BseAI	TCCGGA	1 cut(s)	883
BseDI	CCNNGG	3 cut(s)	211, 698, 1007
BseGI	GGATG	2 cut(s)	313, 574
BseLI	CCNNNNNNNGG	1 cut(s)	1008
BseMII	CTCAG	1 cut(s)	756
BseNI	ACTGG	2 cut(s)	280, 541
BseRI	GAGGAG	4 cut(s)	29, 426, 707, 1139
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	66, 682, 790
BshNI	GGYRCC	1 cut(s)	33
BsiHKAI	GWGCWC	2 cut(s)	81, 332
BsiHKCI	CYCGRG	1 cut(s)	1015
BsiSI	CCGG	8 cut(s)	63, 82, 147, 186, 359, 387, 884, 1194
BslFI	GGGAC	3 cut(s)	38, 70, 232
BslI	CCNNNNNNNGG	1 cut(s)	1008
BsmAI	GTCTC	2 cut(s)	148, 185
BsmFI	GGGAC	3 cut(s)	38, 70, 232
BsmI	GAATGC	2 cut(s)	670, 895
BsnI	GGCC	3 cut(s)	66, 682, 790
Bso31I	GGTCTC	2 cut(s)	148, 185
BsoBI	CYCGRG	1 cut(s)	1015
Bsp119I	TTCGAA	1 cut(s)	947
Bsp1286I	GDGCHC	4 cut(s)	81, 219, 332, 538
Bsp13I	TCCGGA	1 cut(s)	883
Bsp143I	GATC	2 cut(s)	114, 286
BspACI	CCGC	7 cut(s)	48, 94, 103, 150, 161, 237, 635
BspANI	GGCC	3 cut(s)	66, 682, 790
BspCNI	CTCAG	1 cut(s)	757
BspEI	TCCGGA	1 cut(s)	883
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	6 cut(s)	35, 86, 248, 681, 696, 1167
BspMI	ACCTGC	2 cut(s)	381, 637
BspPI	GGATC	1 cut(s)	109
BspT104I	TTCGAA	1 cut(s)	947
BspT107I	GGYRCC	1 cut(s)	33
BspTNI	GGTCTC	2 cut(s)	148, 185
BsrBI	CCGCTC	1 cut(s)	637
BsrFI	RCCGGY	2 cut(s)	185, 358
BsrI	ACTGG	2 cut(s)	280, 541
BssAI	RCCGGY	2 cut(s)	185, 358
BssECI	CCNNGG	3 cut(s)	211, 698, 1007
BssMI	GATC	2 cut(s)	114, 286
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	211, 1007
Bst4CI	ACNGT	2 cut(s)	353, 487
BstACI	GRCGYC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	947
BstC8I	GCNNGC	2 cut(s)	94, 187
BstDEI	CTNAG	4 cut(s)	8, 521, 765, 876
BstDSI	CCRYGG	1 cut(s)	698
BstEII	GGTNACC	1 cut(s)	624
BstF5I	GGATG	2 cut(s)	313, 574
BstFNI	CGCG	1 cut(s)	161
BstHHI	GCGC	2 cut(s)	234, 634
BstKTI	GATC	2 cut(s)	117, 289
BstMAI	GTCTC	2 cut(s)	148, 185
BstMBI	GATC	2 cut(s)	114, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 820
BstNSI	RCATGY	1 cut(s)	268
BstPI	GGTNACC	1 cut(s)	624
BstSFI	CTRYAG	1 cut(s)	1080
BstSLI	GKGCMC	1 cut(s)	219
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	3 cut(s)	66, 682, 790
BtgI	CCRYGG	1 cut(s)	698
BtgZI	GCGATG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	313, 574
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	2 cut(s)	381, 637
Cac8I	GCNNGC	2 cut(s)	94, 187
CfoI	GCGC	2 cut(s)	234, 634
Cfr10I	RCCGGY	2 cut(s)	185, 358
Cfr13I	GGNCC	4 cut(s)	84, 246, 680, 1166
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	4 cut(s)	172, 544, 994, 1012
CviAII	CATG	5 cut(s)	265, 577, 640, 815, 1003
CviQI	GTAC	4 cut(s)	172, 544, 994, 1012
DdeI	CTNAG	4 cut(s)	8, 521, 765, 876
DpnI	GATC	2 cut(s)	116, 288
DpnII	GATC	2 cut(s)	114, 286
DraIII	CACNNNGTG	1 cut(s)	295
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	211, 1007
Eco24I	GRGCYC	2 cut(s)	332, 538
Eco31I	GGTCTC	2 cut(s)	148, 185
Eco47I	GGWCC	3 cut(s)	84, 246, 1166
Eco53kI	GAGCTC	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	1015
Eco91I	GGTNACC	1 cut(s)	624
EcoICRI	GAGCTC	1 cut(s)	330
EcoO109I	RGGNCCY	2 cut(s)	680, 1166
EcoO65I	GGTNACC	1 cut(s)	624
EcoT14I	CCWWGG	2 cut(s)	211, 1007
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	332, 538
ErhI	CCWWGG	2 cut(s)	211, 1007
FaeI	CATG	5 cut(s)	268, 580, 643, 818, 1006
FaiI	YATR	9 cut(s)	20, 266, 285, 477, 578, 641, 816, 843, 1004
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	3 cut(s)	38, 70, 232
FatI	CATG	5 cut(s)	264, 576, 639, 814, 1002
FauI	CCCGC	1 cut(s)	101
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	5 cut(s)	48, 151, 235, 238, 635
FokI	GGATG	2 cut(s)	320, 581
FriOI	GRGCYC	2 cut(s)	332, 538
Fsp4HI	GCNGC	5 cut(s)	48, 151, 235, 238, 635
FspBI	CTAG	2 cut(s)	212, 723
GlaI	GCGC	2 cut(s)	233, 633
GluI	GCNGC	5 cut(s)	48, 151, 235, 238, 635
HaeIII	GGCC	3 cut(s)	66, 682, 790
HapII	CCGG	8 cut(s)	63, 82, 147, 186, 359, 387, 884, 1194
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	2 cut(s)	234, 634
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	5 cut(s)	268, 580, 643, 818, 1006
Hin6I	GCGC	2 cut(s)	232, 632
HinP1I	GCGC	2 cut(s)	232, 632
HincII	GTYRAC	1 cut(s)	1035
HindII	GTYRAC	1 cut(s)	1035
HinfI	GANTC	5 cut(s)	257, 323, 346, 416, 880
HpaII	CCGG	8 cut(s)	63, 82, 147, 186, 359, 387, 884, 1194
HphI	GGTGA	4 cut(s)	433, 499, 530, 793
Hpy166II	GTNNAC	1 cut(s)	1035
Hpy188I	TCNGA	5 cut(s)	9, 178, 741, 754, 766
Hpy188III	TCNNGA	4 cut(s)	112, 712, 884, 921
Hpy8I	GTNNAC	1 cut(s)	1035
Hpy99I	CGWCG	6 cut(s)	56, 125, 158, 161, 185, 406
HpyAV	CCTTC	6 cut(s)	393, 524, 574, 598, 1036, 1084
HpyCH4III	ACNGT	2 cut(s)	353, 487
HpyCH4IV	ACGT	3 cut(s)	180, 228, 369
HpyCH4V	TGCA	3 cut(s)	4, 988, 1153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 820
HpyF3I	CTNAG	4 cut(s)	8, 521, 765, 876
HpySE526I	ACGT	3 cut(s)	180, 228, 369
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	268, 580, 643, 818, 1006
HspAI	GCGC	2 cut(s)	232, 632
Kpn2I	TCCGGA	1 cut(s)	883
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	114, 286
LmnI	GCTCC	6 cut(s)	84, 138, 335, 694, 811, 961
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	212, 723
MaeII	ACGT	3 cut(s)	180, 228, 369
MaeIII	GTNAC	5 cut(s)	334, 487, 572, 607, 624
MalI	GATC	2 cut(s)	116, 288
MbiI	CCGCTC	1 cut(s)	637
MboI	GATC	2 cut(s)	114, 286
MboII	GAAGA	5 cut(s)	436, 658, 805, 841, 920
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	4 cut(s)	81, 219, 332, 538
MluCI	AATT	3 cut(s)	396, 911, 949
MmeI	TCCRAC	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	6
MreI	CGCCGGCG	1 cut(s)	185
MroI	TCCGGA	1 cut(s)	883
MroNI	GCCGGC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	584
MseI	TTAA	2 cut(s)	395, 1110
MspI	CCGG	8 cut(s)	63, 82, 147, 186, 359, 387, 884, 1194
Mva1269I	GAATGC	2 cut(s)	670, 895
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	2 cut(s)	102, 820
NaeI	GCCGGC	1 cut(s)	187
NdeII	GATC	2 cut(s)	114, 286
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	5 cut(s)	268, 580, 643, 818, 1006
NlaIV	GGNNCC	6 cut(s)	35, 86, 248, 681, 696, 1167
NmuCI	GTSAC	2 cut(s)	334, 487
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	947
PaeR7I	CTCGAG	1 cut(s)	1015
PciI	ACATGT	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	4 cut(s)	51, 96, 186, 491
PctI	GAATGC	2 cut(s)	670, 895
PdiI	GCCGGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	5 cut(s)	257, 323, 346, 416, 880
PkrI	GCNGC	5 cut(s)	49, 152, 236, 239, 636
Ppu21I	YACGTR	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	1166
PscI	ACATGT	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	1166
PspEI	GGTNACC	1 cut(s)	624
PspN4I	GGNNCC	6 cut(s)	35, 86, 248, 681, 696, 1167
PspPI	GGNCC	4 cut(s)	84, 246, 680, 1166
PspPPI	RGGWCCY	1 cut(s)	1166
PspXI	VCTCGAGB	1 cut(s)	1015
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	4 cut(s)	173, 545, 995, 1013
RsaNI	GTAC	4 cut(s)	172, 544, 994, 1012
SacI	GAGCTC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	395, 1110
SatI	GCNGC	5 cut(s)	48, 151, 235, 238, 635
Sau3AI	GATC	2 cut(s)	114, 286
Sau96I	GGNCC	4 cut(s)	84, 246, 680, 1166
ScaI	AGTACT	1 cut(s)	173
SduI	GDGCHC	4 cut(s)	81, 219, 332, 538
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	1080
Sfr274I	CTCGAG	1 cut(s)	1015
SfuI	TTCGAA	1 cut(s)	947
SgrAI	CRCCGGYG	1 cut(s)	185
SinI	GGWCC	3 cut(s)	84, 246, 1166
SlaI	CTCGAG	1 cut(s)	1015
SmlI	CTYRAG	1 cut(s)	1015
SmoI	CTYRAG	1 cut(s)	1015
SpeI	ACTAGT	1 cut(s)	722
Sse9I	AATT	3 cut(s)	396, 911, 949
SsiI	CCGC	7 cut(s)	48, 94, 103, 150, 161, 237, 635
SspMI	CTAG	2 cut(s)	212, 723
SstI	GAGCTC	1 cut(s)	332
StyI	CCWWGG	2 cut(s)	211, 1007
TaaI	ACNGT	2 cut(s)	353, 487
TaiI	ACGT	3 cut(s)	183, 231, 372
TaqI	TCGA	8 cut(s)	326, 494, 588, 920, 947, 998, 1016, 1122
TasI	AATT	3 cut(s)	396, 911, 949
TatI	WGTACW	2 cut(s)	171, 543
TauI	GCSGC	4 cut(s)	50, 153, 240, 637
TfiI	GAWTC	5 cut(s)	257, 323, 346, 416, 880
Tru1I	TTAA	2 cut(s)	395, 1110
Tru9I	TTAA	2 cut(s)	395, 1110
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	334, 487
TseI	GCWGC	1 cut(s)	234
Tsp45I	GTSAC	2 cut(s)	334, 487
TspDTI	ATGAA	3 cut(s)	259, 593, 617
TspGWI	ACGGA	5 cut(s)	322, 353, 419, 423, 715
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	3 cut(s)	84, 246, 1166
XapI	RAATTY	1 cut(s)	949
XceI	RCATGY	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	1015
XmaJI	CCTAGG	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	2 cut(s)	212, 723
ZraI	GACGTC	1 cut(s)	181
ZrmI	AGTACT	1 cut(s)	173
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.