U3 small nucleolar RNA-associated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47990 |
| fragaria_vesca | FvH4_5g25500 |
| malus_domestica | MD03G1274200.v1.1 MD11G1296600.v1.1 |
| prunus_persica | Prupe.1G201800_v2.0.a1 Prupe.1G201800_v2.0.a1 |
| pyrus_communis | pycom03g21860 |
| rosa_chinensis | RchiOBHm_Chr7g0215731 |
| rosa_laevigata | RLG00000002628 RLG00000002630 |
| rosa_multiflora | Rmu_sc0000898.1_g000015 |
| rosa_roxburghii | Rroxscaffold_3G00243890 |
| rosa_rugosa | Rorug07G0156300 |
| rosa_samantha | Rh7AG293400 Rh7BG285700 Rh7CG313600 Rh7CG313800 Rh7DG296700 |
| rosa_wichuraiana | Rw7G024970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 3 cut(s) | 267, 348, 477 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 93 |
| AccII | CGCG | 1 cut(s) | 261 |
| AccIII | TCCGGA | 1 cut(s) | 1327 |
| AciI | CCGC | 9 cut(s) | 5, 185, 240, 259, 309, 444, 531, 554, 1061 |
| AclWI | GGATC | 1 cut(s) | 1643 |
| AcoI | YGGCCR | 1 cut(s) | 508 |
| AcsI | RAATTY | 3 cut(s) | 227, 1280, 1393 |
| AcuI | CTGAAG | 2 cut(s) | 1115, 1530 |
| AcyI | GRCGYC | 3 cut(s) | 264, 345, 474 |
| AdeI | CACNNNGTG | 1 cut(s) | 589 |
| AfaI | GTAC | 3 cut(s) | 29, 467, 839 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 93, 683, 1214 |
| AflIII | ACRYGT | 1 cut(s) | 558 |
| AgeI | ACCGGT | 1 cut(s) | 544 |
| AgsI | TTSAA | 5 cut(s) | 106, 759, 1162, 1276, 1537 |
| AjnI | CCWGG | 1 cut(s) | 965 |
| Alw26I | GTCTC | 4 cut(s) | 302, 479, 481, 1228 |
| AlwI | GGATC | 1 cut(s) | 1643 |
| Ama87I | CYCGRG | 1 cut(s) | 322 |
| Aor13HI | TCCGGA | 1 cut(s) | 1327 |
| AoxI | GGCC | 4 cut(s) | 195, 325, 508, 1058 |
| ApeKI | GCWGC | 1 cut(s) | 182 |
| ApoI | RAATTY | 3 cut(s) | 227, 1280, 1393 |
| AsiGI | ACCGGT | 1 cut(s) | 544 |
| AspLEI | GCGC | 1 cut(s) | 190 |
| AspS9I | GGNCC | 3 cut(s) | 96, 325, 1130 |
| AsuC2I | CCSGG | 1 cut(s) | 682 |
| AsuHPI | GGTGA | 5 cut(s) | 150, 196, 225, 534, 1268 |
| AsuII | TTCGAA | 2 cut(s) | 983, 1391 |
| AvaI | CYCGRG | 1 cut(s) | 322 |
| AvaII | GGWCC | 2 cut(s) | 96, 1130 |
| BbsI | GAAGAC | 1 cut(s) | 1518 |
| BbvI | GCAGC | 1 cut(s) | 169 |
| BccI | CCATC | 9 cut(s) | 254, 287, 685, 727, 809, 857, 1216, 1342, 1468 |
| BciT130I | CCWGG | 1 cut(s) | 967 |
| BciVI | GTATCC | 1 cut(s) | 1393 |
| BclI | TGATCA | 1 cut(s) | 580 |
| BcnI | CCSGG | 1 cut(s) | 682 |
| BcoDI | GTCTC | 4 cut(s) | 302, 479, 481, 1228 |
| BfaI | CTAG | 4 cut(s) | 1052, 1301, 1455, 1496 |
| BfuI | GTATCC | 1 cut(s) | 1393 |
| BisI | GCNGC | 6 cut(s) | 183, 186, 309, 445, 532, 1061 |
| BlsI | GCNGC | 6 cut(s) | 184, 187, 310, 446, 533, 1062 |
| BmcAI | AGTACT | 1 cut(s) | 467 |
| Bme1390I | CCNGG | 2 cut(s) | 682, 967 |
| Bme18I | GGWCC | 2 cut(s) | 96, 1130 |
| BmeT110I | CYCGRG | 1 cut(s) | 322 |
| BmgT120I | GGNCC | 3 cut(s) | 96, 325, 1130 |
| BmiI | GGNNCC | 4 cut(s) | 9, 920, 1131, 1143 |
| BmrFI | CCNGG | 2 cut(s) | 682, 967 |
| BmrI | ACTGGG | 3 cut(s) | 407, 478, 579 |
| BmsI | GCATC | 2 cut(s) | 278, 1105 |
| BmuI | ACTGGG | 3 cut(s) | 407, 478, 579 |
| BpiI | GAAGAC | 1 cut(s) | 1518 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1022, 1054 |
| Bpu10I | CCTNAGC | 1 cut(s) | 54 |
| Bpu14I | TTCGAA | 2 cut(s) | 983, 1391 |
| BpuMI | CCSGG | 1 cut(s) | 682 |
| BsaHI | GRCGYC | 3 cut(s) | 264, 345, 474 |
| BsaI | GGTCTC | 3 cut(s) | 302, 479, 1228 |
| BsaJI | CCNNGG | 4 cut(s) | 681, 966, 1212, 1238 |
| BsaWI | WCCGGW | 2 cut(s) | 544, 1327 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 83, 113, 116, 146 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 93, 683, 1214 |
| Bse118I | RCCGGY | 2 cut(s) | 544, 652 |
| Bse1I | ACTGG | 4 cut(s) | 98, 413, 473, 574 |
| Bse3DI | GCAATG | 1 cut(s) | 1595 |
| BseAI | TCCGGA | 1 cut(s) | 1327 |
| BseBI | CCWGG | 1 cut(s) | 967 |
| BseDI | CCNNGG | 4 cut(s) | 681, 966, 1212, 1238 |
| BseGI | GGATG | 6 cut(s) | 607, 677, 820, 868, 1120, 1208 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 93, 683, 1214 |
| BseMI | GCAATG | 1 cut(s) | 1595 |
| BseMII | CTCAG | 2 cut(s) | 327, 1476 |
| BseNI | ACTGG | 4 cut(s) | 98, 413, 473, 574 |
| BseRI | GAGGAG | 7 cut(s) | 124, 290, 1021, 1061, 1093, 1421, 1586 |
| BseXI | GCAGC | 1 cut(s) | 169 |
| BseYI | CCCAGC | 3 cut(s) | 391, 1001, 1118 |
| Bsh1236I | CGCG | 1 cut(s) | 261 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1449 |
| BshFI | GGCC | 4 cut(s) | 197, 327, 510, 1060 |
| BshTI | ACCGGT | 1 cut(s) | 544 |
| BsiEI | CGRYCG | 1 cut(s) | 1449 |
| BsiHKCI | CYCGRG | 1 cut(s) | 322 |
| BsiSI | CCGG | 7 cut(s) | 441, 480, 545, 653, 681, 953, 1328 |
| BslFI | GGGAC | 5 cut(s) | 485, 991, 1003, 1143, 1436 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 93, 683, 1214 |
| BsmAI | GTCTC | 4 cut(s) | 302, 479, 481, 1228 |
| BsmBI | CGTCTC | 1 cut(s) | 481 |
| BsmFI | GGGAC | 5 cut(s) | 485, 991, 1003, 1143, 1436 |
| BsmI | GAATGC | 1 cut(s) | 1339 |
| BsnI | GGCC | 4 cut(s) | 197, 327, 510, 1060 |
| Bso31I | GGTCTC | 3 cut(s) | 302, 479, 1228 |
| BsoBI | CYCGRG | 1 cut(s) | 322 |
| Bsp119I | TTCGAA | 2 cut(s) | 983, 1391 |
| Bsp13I | TCCGGA | 1 cut(s) | 1327 |
| Bsp143I | GATC | 2 cut(s) | 580, 1635 |
| BspACI | CCGC | 9 cut(s) | 5, 185, 240, 259, 309, 444, 531, 554, 1061 |
| BspANI | GGCC | 4 cut(s) | 197, 327, 510, 1060 |
| BspCNI | CTCAG | 2 cut(s) | 326, 1475 |
| BspEI | TCCGGA | 1 cut(s) | 1327 |
| BspFNI | CGCG | 1 cut(s) | 261 |
| BspLI | GGNNCC | 4 cut(s) | 9, 920, 1131, 1143 |
| BspPI | GGATC | 1 cut(s) | 1643 |
| BspT104I | TTCGAA | 2 cut(s) | 983, 1391 |
| BspTNI | GGTCTC | 3 cut(s) | 302, 479, 1228 |
| BsrDI | GCAATG | 1 cut(s) | 1595 |
| BsrFI | RCCGGY | 2 cut(s) | 544, 652 |
| BsrI | ACTGG | 4 cut(s) | 98, 413, 473, 574 |
| BssAI | RCCGGY | 2 cut(s) | 544, 652 |
| BssECI | CCNNGG | 4 cut(s) | 681, 966, 1212, 1238 |
| BssMI | GATC | 2 cut(s) | 580, 1635 |
| BssNI | GRCGYC | 3 cut(s) | 264, 345, 474 |
| BssT1I | CCWWGG | 1 cut(s) | 1238 |
| Bst2UI | CCWGG | 1 cut(s) | 967 |
| Bst4CI | ACNGT | 3 cut(s) | 589, 781, 1450 |
| Bst6I | CTCTTC | 1 cut(s) | 256 |
| BstACI | GRCGYC | 3 cut(s) | 264, 345, 474 |
| BstBI | TTCGAA | 2 cut(s) | 983, 1391 |
| BstC8I | GCNNGC | 2 cut(s) | 371, 650 |
| BstDEI | CTNAG | 3 cut(s) | 54, 313, 1462 |
| BstF5I | GGATG | 6 cut(s) | 607, 677, 820, 868, 1120, 1208 |
| BstFNI | CGCG | 1 cut(s) | 261 |
| BstHHI | GCGC | 1 cut(s) | 190 |
| BstKTI | GATC | 2 cut(s) | 583, 1638 |
| BstMAI | GTCTC | 4 cut(s) | 302, 479, 481, 1228 |
| BstMBI | GATC | 2 cut(s) | 580, 1635 |
| BstMCI | CGRYCG | 1 cut(s) | 1449 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 194, 537, 1057, 1090, 1267 |
| BstNI | CCWGG | 1 cut(s) | 967 |
| BstNSI | RCATGY | 1 cut(s) | 562 |
| BstSCI | CCNGG | 2 cut(s) | 680, 965 |
| BstUI | CGCG | 1 cut(s) | 261 |
| BstV1I | GCAGC | 1 cut(s) | 169 |
| BstV2I | GAAGAC | 1 cut(s) | 1518 |
| BsuI | GTATCC | 1 cut(s) | 1393 |
| BsuRI | GGCC | 4 cut(s) | 197, 327, 510, 1060 |
| BtgZI | GCGATG | 2 cut(s) | 289, 306 |
| BtsCI | GGATG | 6 cut(s) | 607, 677, 820, 868, 1120, 1208 |
| BtsIMutI | CAGTG | 1 cut(s) | 594 |
| Cac8I | GCNNGC | 2 cut(s) | 371, 650 |
| CfoI | GCGC | 1 cut(s) | 190 |
| Cfr10I | RCCGGY | 2 cut(s) | 544, 652 |
| Cfr13I | GGNCC | 3 cut(s) | 96, 325, 1130 |
| CseI | GACGC | 1 cut(s) | 461 |
| Csp6I | GTAC | 3 cut(s) | 28, 466, 838 |
| CspAI | ACCGGT | 1 cut(s) | 544 |
| CviAII | CATG | 5 cut(s) | 559, 644, 913, 934, 1262 |
| CviQI | GTAC | 3 cut(s) | 28, 466, 838 |
| DdeI | CTNAG | 3 cut(s) | 54, 313, 1462 |
| DpnI | GATC | 2 cut(s) | 582, 1637 |
| DpnII | GATC | 2 cut(s) | 580, 1635 |
| DraIII | CACNNNGTG | 1 cut(s) | 589 |
| EaeI | YGGCCR | 1 cut(s) | 508 |
| Eam1104I | CTCTTC | 1 cut(s) | 256 |
| EarI | CTCTTC | 1 cut(s) | 256 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Eco130I | CCWWGG | 1 cut(s) | 1238 |
| Eco31I | GGTCTC | 3 cut(s) | 302, 479, 1228 |
| Eco47I | GGWCC | 2 cut(s) | 96, 1130 |
| Eco57I | CTGAAG | 2 cut(s) | 1115, 1530 |
| Eco88I | CYCGRG | 1 cut(s) | 322 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1130 |
| EcoRII | CCWGG | 1 cut(s) | 965 |
| EcoT14I | CCWWGG | 1 cut(s) | 1238 |
| ErhI | CCWWGG | 1 cut(s) | 1238 |
| Esp3I | CGTCTC | 1 cut(s) | 481 |
| FaeI | CATG | 5 cut(s) | 562, 647, 916, 937, 1265 |
| FaqI | GGGAC | 5 cut(s) | 485, 991, 1003, 1143, 1436 |
| FatI | CATG | 5 cut(s) | 558, 643, 912, 933, 1261 |
| FbaI | TGATCA | 1 cut(s) | 580 |
| Fnu4HI | GCNGC | 6 cut(s) | 183, 186, 309, 445, 532, 1061 |
| FokI | GGATG | 6 cut(s) | 614, 664, 827, 875, 1127, 1195 |
| Fsp4HI | GCNGC | 6 cut(s) | 183, 186, 309, 445, 532, 1061 |
| FspBI | CTAG | 4 cut(s) | 1052, 1301, 1455, 1496 |
| GlaI | GCGC | 1 cut(s) | 189 |
| GluI | GCNGC | 6 cut(s) | 183, 186, 309, 445, 532, 1061 |
| GsaI | CCCAGC | 3 cut(s) | 395, 1005, 1122 |
| HaeIII | GGCC | 4 cut(s) | 197, 327, 510, 1060 |
| HapII | CCGG | 7 cut(s) | 441, 480, 545, 653, 681, 953, 1328 |
| HgaI | GACGC | 1 cut(s) | 461 |
| HhaI | GCGC | 1 cut(s) | 190 |
| Hin1I | GRCGYC | 3 cut(s) | 264, 345, 474 |
| Hin1II | CATG | 5 cut(s) | 562, 647, 916, 937, 1265 |
| Hin6I | GCGC | 1 cut(s) | 188 |
| HinP1I | GCGC | 1 cut(s) | 188 |
| HincII | GTYRAC | 1 cut(s) | 1482 |
| HindII | GTYRAC | 1 cut(s) | 1482 |
| HindIII | AAGCTT | 2 cut(s) | 371, 593 |
| HinfI | GANTC | 4 cut(s) | 83, 617, 640, 1324 |
| HpaII | CCGG | 7 cut(s) | 441, 480, 545, 653, 681, 953, 1328 |
| HphI | GGTGA | 5 cut(s) | 150, 196, 225, 534, 1268 |
| Hpy166II | GTNNAC | 1 cut(s) | 1482 |
| Hpy188I | TCNGA | 5 cut(s) | 287, 316, 1042, 1213, 1528 |
| Hpy188III | TCNNGA | 2 cut(s) | 1328, 1496 |
| Hpy8I | GTNNAC | 1 cut(s) | 1482 |
| Hpy99I | CGWCG | 5 cut(s) | 266, 269, 347, 452, 455 |
| HpyAV | CCTTC | 8 cut(s) | 112, 163, 265, 805, 868, 1090, 1483, 1531 |
| HpyCH4III | ACNGT | 3 cut(s) | 589, 781, 1450 |
| HpyCH4IV | ACGT | 5 cut(s) | 26, 264, 345, 474, 663 |
| HpyCH4V | TGCA | 3 cut(s) | 695, 1435, 1600 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 194, 537, 1057, 1090, 1267 |
| HpyF3I | CTNAG | 3 cut(s) | 54, 313, 1462 |
| HpySE526I | ACGT | 5 cut(s) | 26, 264, 345, 474, 663 |
| Hsp92I | GRCGYC | 3 cut(s) | 264, 345, 474 |
| Hsp92II | CATG | 5 cut(s) | 562, 647, 916, 937, 1265 |
| HspAI | GCGC | 1 cut(s) | 188 |
| Kpn2I | TCCGGA | 1 cut(s) | 1327 |
| Ksp22I | TGATCA | 1 cut(s) | 580 |
| Kzo9I | GATC | 2 cut(s) | 580, 1635 |
| LmnI | GCTCC | 4 cut(s) | 432, 931, 1048, 1408 |
| Lsp1109I | GCAGC | 1 cut(s) | 169 |
| LweI | GCATC | 2 cut(s) | 278, 1105 |
| MaeI | CTAG | 4 cut(s) | 1052, 1301, 1455, 1496 |
| MaeII | ACGT | 5 cut(s) | 26, 264, 345, 474, 663 |
| MaeIII | GTNAC | 3 cut(s) | 781, 901, 1457 |
| MalI | GATC | 2 cut(s) | 582, 1637 |
| MboI | GATC | 2 cut(s) | 580, 1635 |
| MboII | GAAGA | 8 cut(s) | 243, 730, 836, 1024, 1034, 1288, 1381, 1523 |
| MmeI | TCCRAC | 1 cut(s) | 778 |
| MroI | TCCGGA | 1 cut(s) | 1327 |
| MseI | TTAA | 4 cut(s) | 462, 612, 1103, 1557 |
| MspA1I | CMGCKG | 1 cut(s) | 701 |
| MspI | CCGG | 7 cut(s) | 441, 480, 545, 653, 681, 953, 1328 |
| MspR9I | CCNGG | 2 cut(s) | 682, 967 |
| Mva1269I | GAATGC | 1 cut(s) | 1339 |
| MvaI | CCWGG | 1 cut(s) | 967 |
| MvnI | CGCG | 1 cut(s) | 261 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 194, 537, 1057, 1090, 1267 |
| NciI | CCSGG | 1 cut(s) | 682 |
| NdeII | GATC | 2 cut(s) | 580, 1635 |
| NlaIII | CATG | 5 cut(s) | 562, 647, 916, 937, 1265 |
| NlaIV | GGNNCC | 4 cut(s) | 9, 920, 1131, 1143 |
| NmeAIII | GCCGAG | 2 cut(s) | 173, 486 |
| NmuCI | GTSAC | 1 cut(s) | 781 |
| NspI | RCATGY | 1 cut(s) | 562 |
| NspV | TTCGAA | 2 cut(s) | 983, 1391 |
| PciI | ACATGT | 1 cut(s) | 558 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 373, 394, 456, 480 |
| PctI | GAATGC | 1 cut(s) | 1339 |
| PfeI | GAWTC | 4 cut(s) | 83, 617, 640, 1324 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 93 |
| PinAI | ACCGGT | 1 cut(s) | 544 |
| PkrI | GCNGC | 6 cut(s) | 184, 187, 310, 446, 533, 1062 |
| PpuMI | RGGWCCY | 1 cut(s) | 1130 |
| PscI | ACATGT | 1 cut(s) | 558 |
| Psp5II | RGGWCCY | 1 cut(s) | 1130 |
| Psp6I | CCWGG | 1 cut(s) | 965 |
| PspFI | CCCAGC | 3 cut(s) | 391, 1001, 1118 |
| PspGI | CCWGG | 1 cut(s) | 965 |
| PspN4I | GGNNCC | 4 cut(s) | 9, 920, 1131, 1143 |
| PspPI | GGNCC | 3 cut(s) | 96, 325, 1130 |
| PspPPI | RGGWCCY | 1 cut(s) | 1130 |
| PvuII | CAGCTG | 1 cut(s) | 701 |
| RsaI | GTAC | 3 cut(s) | 29, 467, 839 |
| RsaNI | GTAC | 3 cut(s) | 28, 466, 838 |
| SaqAI | TTAA | 4 cut(s) | 462, 612, 1103, 1557 |
| SatI | GCNGC | 6 cut(s) | 183, 186, 309, 445, 532, 1061 |
| Sau3AI | GATC | 2 cut(s) | 580, 1635 |
| Sau96I | GGNCC | 3 cut(s) | 96, 325, 1130 |
| ScaI | AGTACT | 1 cut(s) | 467 |
| ScrFI | CCNGG | 2 cut(s) | 682, 967 |
| SfaNI | GCATC | 2 cut(s) | 278, 1105 |
| SfuI | TTCGAA | 2 cut(s) | 983, 1391 |
| SinI | GGWCC | 2 cut(s) | 96, 1130 |
| SsiI | CCGC | 9 cut(s) | 5, 185, 240, 259, 309, 444, 531, 554, 1061 |
| SspMI | CTAG | 4 cut(s) | 1052, 1301, 1455, 1496 |
| StyD4I | CCNGG | 2 cut(s) | 680, 965 |
| StyI | CCWWGG | 1 cut(s) | 1238 |
| TaaI | ACNGT | 3 cut(s) | 589, 781, 1450 |
| TaiI | ACGT | 5 cut(s) | 29, 267, 348, 477, 666 |
| TaqI | TCGA | 4 cut(s) | 342, 983, 1391, 1445 |
| TatI | WGTACW | 2 cut(s) | 465, 837 |
| TauI | GCSGC | 5 cut(s) | 188, 311, 447, 534, 1063 |
| TfiI | GAWTC | 4 cut(s) | 83, 617, 640, 1324 |
| Tru1I | TTAA | 4 cut(s) | 462, 612, 1103, 1557 |
| Tru9I | TTAA | 4 cut(s) | 462, 612, 1103, 1557 |
| TscAI | CASTG | 1 cut(s) | 594 |
| TseFI | GTSAC | 1 cut(s) | 781 |
| TseI | GCWGC | 1 cut(s) | 182 |
| Tsp45I | GTSAC | 1 cut(s) | 781 |
| TspDTI | ATGAA | 3 cut(s) | 553, 887, 911 |
| TspRI | CASTG | 1 cut(s) | 594 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 93 |
| VpaK11BI | GGWCC | 2 cut(s) | 96, 1130 |
| XapI | RAATTY | 3 cut(s) | 227, 1280, 1393 |
| XbaI | TCTAGA | 1 cut(s) | 1495 |
| XceI | RCATGY | 1 cut(s) | 562 |
| XspI | CTAG | 4 cut(s) | 1052, 1301, 1455, 1496 |
| ZraI | GACGTC | 3 cut(s) | 265, 346, 475 |
| ZrmI | AGTACT | 1 cut(s) | 467 |