Prupe.1G201800_v2.0.a1

U3 small nucleolar RNA-associated

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
19926354 .. 19930929
4576 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G201800.1

Sequence Viewer

Length: 1653 bp
ATGGCGGAACCCCAAATCTCCAAGACGTACCCTGTGAAACCCAAGCACAAACCTAAGCCCCGAACCCCAAAACAAACCACAGAATCCAAATACTGGTCCTCCTTCAAAACCAAGCAAATCCCAGACCTCATCTCCTCCATAACCTCCCTAACCTTCTCACCCACAACCCCACACTCATTCGCTGCGGCGCACTCGGCCTCTCTCACCCTCTACAATCCCCAAAACAAATTCTCACCCACCGCCACCATCTCTTCCTTCCGCGACGTCGTTTCCTCTGCCTCGTTCCGATGCGATGGTCTCCTCATCGCCGCCTCAGACCTCTCGGGCCTCGTCCAAGTATTCGACGTCAAAACCCGAACCCCACTTCGCAAGCTTCGTTCCCACACACGCCCAGCCCGTTTCGTCAAATACCCAGTTGCCGATAAGCTCCATTTGGTTTCCGGCGGCGACGACGCAATCGTTAAGTACTGGGACGTCTCCGGCGAGACCCCAATTTGCGACTTGCTCGGCCACAAGGACTATGTGAGGTGCGGCGATTGCTCACCGGTTAGTGCGGACATGTTCATAACTGGGTCTTATGATCACACAGTGAAGCTTTGGGATGTAAGAGTTAAGGATTCTGGGTCAGTAATGGAAGTGAATCATGGCAAGCCGGTTGAGGACGTAATTTTCTTGCCATCCGGGGGGTTAGTTGCAACAGCTGGTGGCAATTCTGTGAAGATTTGGGATTTGATGGGAGGTGGAAAAATGGTGTATTCAATGGAGAGCCATAACAAGACTGTGACTTCCATTTGTGTTGGAAAACTTGGGAAGGATGGTGGGGAAGAAGCACAGCAGTACAGGATTTTGAGTGTGGCATTGGATGGTTATATGAAGGTGTTTGATTATGCCAAAATGAAAGTTACTCATTCCATGAGGTTCCCTGCTCCCCTCATGTCAGTAGGGTTTTCGCCGGATTGTTTGACCAGGGTTATTGGGACTTCGAATGGGACAATATACGCTGGGAGGAGGAAGAACAAGGAAGATTTTGAGGGTGGCTCTGATGAGGAGCTAGAGAGGCCGCTTTCCAAGTATGAGAGGAGGCAAAAGAAGCTGAAGGCGTTAAGCTCTGGGGATGCTGGGGGATTGGGACCTGTGGAGGAACCACAGGTTCGGGTTTTGAAGCCTACTAATTTTCGGTATTTCCACAGAGGGCAAGGAGAGAAGCCATCCGAGGGGGAGTATTTGGTAATGAGACCAAGGAAACTGAAATTAGGTGAGCATGACAAGCTGTTGAAGAAATTTAGGCACAAGGAAGCTCTAGTGTCTGTGTTGGGTAGTAAGAATCCGGAGAATGCTGTGGCTGTGATGGAGGAATTAGTAGCAAGGAAGAAATTGCTGAAATGTGTTTCGAATTTGGATACAGAGGAGCTTGGATTGTTGCTGATGTTTTTGCAGAAGCACTCGACCGTCCCTAGTTACTCAGGGTTGTTGATGGGGTTGACAAAGAAGGTTCTAGAGATGAGGGCTGAAGACATTAGAGCTTCTGACGATTTGAAGGGTCATATTAGAAACCTTAAAAGGTCTGTTGAGGAGGAAATACGAATACAACAATCATTGCAAGAGATACAGGGTATAATTTCTCCTTTGTTGAGGATCACGGGAAGAAGATGA

Protein Analysis

551

Amino Acids

61.1

Weight (kDa)

9.46

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012137)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 267, 348, 477
AccB7I CCANNNNNTGG 1 cut(s) 93
AccII CGCG 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 1327
AciI CCGC 9 cut(s) 5, 185, 240, 259, 309, 444, 531, 554, 1061
AclWI GGATC 1 cut(s) 1643
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 3 cut(s) 227, 1280, 1393
AcuI CTGAAG 2 cut(s) 1115, 1530
AcyI GRCGYC 3 cut(s) 264, 345, 474
AdeI CACNNNGTG 1 cut(s) 589
AfaI GTAC 3 cut(s) 29, 467, 839
AfiI CCNNNNNNNGG 3 cut(s) 93, 683, 1214
AflIII ACRYGT 1 cut(s) 558
AgeI ACCGGT 1 cut(s) 544
AgsI TTSAA 5 cut(s) 106, 759, 1162, 1276, 1537
AjnI CCWGG 1 cut(s) 965
Alw26I GTCTC 4 cut(s) 302, 479, 481, 1228
AlwI GGATC 1 cut(s) 1643
Ama87I CYCGRG 1 cut(s) 322
Aor13HI TCCGGA 1 cut(s) 1327
AoxI GGCC 4 cut(s) 195, 325, 508, 1058
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 3 cut(s) 227, 1280, 1393
AsiGI ACCGGT 1 cut(s) 544
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 3 cut(s) 96, 325, 1130
AsuC2I CCSGG 1 cut(s) 682
AsuHPI GGTGA 5 cut(s) 150, 196, 225, 534, 1268
AsuII TTCGAA 2 cut(s) 983, 1391
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 2 cut(s) 96, 1130
BbsI GAAGAC 1 cut(s) 1518
BbvI GCAGC 1 cut(s) 169
BccI CCATC 9 cut(s) 254, 287, 685, 727, 809, 857, 1216, 1342, 1468
BciT130I CCWGG 1 cut(s) 967
BciVI GTATCC 1 cut(s) 1393
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 1 cut(s) 682
BcoDI GTCTC 4 cut(s) 302, 479, 481, 1228
BfaI CTAG 4 cut(s) 1052, 1301, 1455, 1496
BfuI GTATCC 1 cut(s) 1393
BisI GCNGC 6 cut(s) 183, 186, 309, 445, 532, 1061
BlsI GCNGC 6 cut(s) 184, 187, 310, 446, 533, 1062
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 2 cut(s) 682, 967
Bme18I GGWCC 2 cut(s) 96, 1130
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 3 cut(s) 96, 325, 1130
BmiI GGNNCC 4 cut(s) 9, 920, 1131, 1143
BmrFI CCNGG 2 cut(s) 682, 967
BmrI ACTGGG 3 cut(s) 407, 478, 579
BmsI GCATC 2 cut(s) 278, 1105
BmuI ACTGGG 3 cut(s) 407, 478, 579
BpiI GAAGAC 1 cut(s) 1518
BplI GAGNNNNNCTC 2 cut(s) 1022, 1054
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 2 cut(s) 983, 1391
BpuMI CCSGG 1 cut(s) 682
BsaHI GRCGYC 3 cut(s) 264, 345, 474
BsaI GGTCTC 3 cut(s) 302, 479, 1228
BsaJI CCNNGG 4 cut(s) 681, 966, 1212, 1238
BsaWI WCCGGW 2 cut(s) 544, 1327
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 116, 146
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 683, 1214
Bse118I RCCGGY 2 cut(s) 544, 652
Bse1I ACTGG 4 cut(s) 98, 413, 473, 574
Bse3DI GCAATG 1 cut(s) 1595
BseAI TCCGGA 1 cut(s) 1327
BseBI CCWGG 1 cut(s) 967
BseDI CCNNGG 4 cut(s) 681, 966, 1212, 1238
BseGI GGATG 6 cut(s) 607, 677, 820, 868, 1120, 1208
BseLI CCNNNNNNNGG 3 cut(s) 93, 683, 1214
BseMI GCAATG 1 cut(s) 1595
BseMII CTCAG 2 cut(s) 327, 1476
BseNI ACTGG 4 cut(s) 98, 413, 473, 574
BseRI GAGGAG 7 cut(s) 124, 290, 1021, 1061, 1093, 1421, 1586
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 3 cut(s) 391, 1001, 1118
Bsh1236I CGCG 1 cut(s) 261
Bsh1285I CGRYCG 1 cut(s) 1449
BshFI GGCC 4 cut(s) 197, 327, 510, 1060
BshTI ACCGGT 1 cut(s) 544
BsiEI CGRYCG 1 cut(s) 1449
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 7 cut(s) 441, 480, 545, 653, 681, 953, 1328
BslFI GGGAC 5 cut(s) 485, 991, 1003, 1143, 1436
BslI CCNNNNNNNGG 3 cut(s) 93, 683, 1214
BsmAI GTCTC 4 cut(s) 302, 479, 481, 1228
BsmBI CGTCTC 1 cut(s) 481
BsmFI GGGAC 5 cut(s) 485, 991, 1003, 1143, 1436
BsmI GAATGC 1 cut(s) 1339
BsnI GGCC 4 cut(s) 197, 327, 510, 1060
Bso31I GGTCTC 3 cut(s) 302, 479, 1228
BsoBI CYCGRG 1 cut(s) 322
Bsp119I TTCGAA 2 cut(s) 983, 1391
Bsp13I TCCGGA 1 cut(s) 1327
Bsp143I GATC 2 cut(s) 580, 1635
BspACI CCGC 9 cut(s) 5, 185, 240, 259, 309, 444, 531, 554, 1061
BspANI GGCC 4 cut(s) 197, 327, 510, 1060
BspCNI CTCAG 2 cut(s) 326, 1475
BspEI TCCGGA 1 cut(s) 1327
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 4 cut(s) 9, 920, 1131, 1143
BspPI GGATC 1 cut(s) 1643
BspT104I TTCGAA 2 cut(s) 983, 1391
BspTNI GGTCTC 3 cut(s) 302, 479, 1228
BsrDI GCAATG 1 cut(s) 1595
BsrFI RCCGGY 2 cut(s) 544, 652
BsrI ACTGG 4 cut(s) 98, 413, 473, 574
BssAI RCCGGY 2 cut(s) 544, 652
BssECI CCNNGG 4 cut(s) 681, 966, 1212, 1238
BssMI GATC 2 cut(s) 580, 1635
BssNI GRCGYC 3 cut(s) 264, 345, 474
BssT1I CCWWGG 1 cut(s) 1238
Bst2UI CCWGG 1 cut(s) 967
Bst4CI ACNGT 3 cut(s) 589, 781, 1450
Bst6I CTCTTC 1 cut(s) 256
BstACI GRCGYC 3 cut(s) 264, 345, 474
BstBI TTCGAA 2 cut(s) 983, 1391
BstC8I GCNNGC 2 cut(s) 371, 650
BstDEI CTNAG 3 cut(s) 54, 313, 1462
BstF5I GGATG 6 cut(s) 607, 677, 820, 868, 1120, 1208
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 583, 1638
BstMAI GTCTC 4 cut(s) 302, 479, 481, 1228
BstMBI GATC 2 cut(s) 580, 1635
BstMCI CGRYCG 1 cut(s) 1449
BstMWI GCNNNNNNNGC 5 cut(s) 194, 537, 1057, 1090, 1267
BstNI CCWGG 1 cut(s) 967
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 2 cut(s) 680, 965
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 1518
BsuI GTATCC 1 cut(s) 1393
BsuRI GGCC 4 cut(s) 197, 327, 510, 1060
BtgZI GCGATG 2 cut(s) 289, 306
BtsCI GGATG 6 cut(s) 607, 677, 820, 868, 1120, 1208
BtsIMutI CAGTG 1 cut(s) 594
Cac8I GCNNGC 2 cut(s) 371, 650
CfoI GCGC 1 cut(s) 190
Cfr10I RCCGGY 2 cut(s) 544, 652
Cfr13I GGNCC 3 cut(s) 96, 325, 1130
CseI GACGC 1 cut(s) 461
Csp6I GTAC 3 cut(s) 28, 466, 838
CspAI ACCGGT 1 cut(s) 544
CviAII CATG 5 cut(s) 559, 644, 913, 934, 1262
CviQI GTAC 3 cut(s) 28, 466, 838
DdeI CTNAG 3 cut(s) 54, 313, 1462
DpnI GATC 2 cut(s) 582, 1637
DpnII GATC 2 cut(s) 580, 1635
DraIII CACNNNGTG 1 cut(s) 589
EaeI YGGCCR 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 1238
Eco31I GGTCTC 3 cut(s) 302, 479, 1228
Eco47I GGWCC 2 cut(s) 96, 1130
Eco57I CTGAAG 2 cut(s) 1115, 1530
Eco88I CYCGRG 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 1130
EcoRII CCWGG 1 cut(s) 965
EcoT14I CCWWGG 1 cut(s) 1238
ErhI CCWWGG 1 cut(s) 1238
Esp3I CGTCTC 1 cut(s) 481
FaeI CATG 5 cut(s) 562, 647, 916, 937, 1265
FaqI GGGAC 5 cut(s) 485, 991, 1003, 1143, 1436
FatI CATG 5 cut(s) 558, 643, 912, 933, 1261
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 6 cut(s) 183, 186, 309, 445, 532, 1061
FokI GGATG 6 cut(s) 614, 664, 827, 875, 1127, 1195
Fsp4HI GCNGC 6 cut(s) 183, 186, 309, 445, 532, 1061
FspBI CTAG 4 cut(s) 1052, 1301, 1455, 1496
GlaI GCGC 1 cut(s) 189
GluI GCNGC 6 cut(s) 183, 186, 309, 445, 532, 1061
GsaI CCCAGC 3 cut(s) 395, 1005, 1122
HaeIII GGCC 4 cut(s) 197, 327, 510, 1060
HapII CCGG 7 cut(s) 441, 480, 545, 653, 681, 953, 1328
HgaI GACGC 1 cut(s) 461
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 3 cut(s) 264, 345, 474
Hin1II CATG 5 cut(s) 562, 647, 916, 937, 1265
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 1482
HindII GTYRAC 1 cut(s) 1482
HindIII AAGCTT 2 cut(s) 371, 593
HinfI GANTC 4 cut(s) 83, 617, 640, 1324
HpaII CCGG 7 cut(s) 441, 480, 545, 653, 681, 953, 1328
HphI GGTGA 5 cut(s) 150, 196, 225, 534, 1268
Hpy166II GTNNAC 1 cut(s) 1482
Hpy188I TCNGA 5 cut(s) 287, 316, 1042, 1213, 1528
Hpy188III TCNNGA 2 cut(s) 1328, 1496
Hpy8I GTNNAC 1 cut(s) 1482
Hpy99I CGWCG 5 cut(s) 266, 269, 347, 452, 455
HpyAV CCTTC 8 cut(s) 112, 163, 265, 805, 868, 1090, 1483, 1531
HpyCH4III ACNGT 3 cut(s) 589, 781, 1450
HpyCH4IV ACGT 5 cut(s) 26, 264, 345, 474, 663
HpyCH4V TGCA 3 cut(s) 695, 1435, 1600
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 537, 1057, 1090, 1267
HpyF3I CTNAG 3 cut(s) 54, 313, 1462
HpySE526I ACGT 5 cut(s) 26, 264, 345, 474, 663
Hsp92I GRCGYC 3 cut(s) 264, 345, 474
Hsp92II CATG 5 cut(s) 562, 647, 916, 937, 1265
HspAI GCGC 1 cut(s) 188
Kpn2I TCCGGA 1 cut(s) 1327
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 2 cut(s) 580, 1635
LmnI GCTCC 4 cut(s) 432, 931, 1048, 1408
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 2 cut(s) 278, 1105
MaeI CTAG 4 cut(s) 1052, 1301, 1455, 1496
MaeII ACGT 5 cut(s) 26, 264, 345, 474, 663
MaeIII GTNAC 3 cut(s) 781, 901, 1457
MalI GATC 2 cut(s) 582, 1637
MboI GATC 2 cut(s) 580, 1635
MboII GAAGA 8 cut(s) 243, 730, 836, 1024, 1034, 1288, 1381, 1523
MmeI TCCRAC 1 cut(s) 778
MroI TCCGGA 1 cut(s) 1327
MseI TTAA 4 cut(s) 462, 612, 1103, 1557
MspA1I CMGCKG 1 cut(s) 701
MspI CCGG 7 cut(s) 441, 480, 545, 653, 681, 953, 1328
MspR9I CCNGG 2 cut(s) 682, 967
Mva1269I GAATGC 1 cut(s) 1339
MvaI CCWGG 1 cut(s) 967
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 5 cut(s) 194, 537, 1057, 1090, 1267
NciI CCSGG 1 cut(s) 682
NdeII GATC 2 cut(s) 580, 1635
NlaIII CATG 5 cut(s) 562, 647, 916, 937, 1265
NlaIV GGNNCC 4 cut(s) 9, 920, 1131, 1143
NmeAIII GCCGAG 2 cut(s) 173, 486
NmuCI GTSAC 1 cut(s) 781
NspI RCATGY 1 cut(s) 562
NspV TTCGAA 2 cut(s) 983, 1391
PciI ACATGT 1 cut(s) 558
PcsI WCGNNNNNNNCGW 4 cut(s) 373, 394, 456, 480
PctI GAATGC 1 cut(s) 1339
PfeI GAWTC 4 cut(s) 83, 617, 640, 1324
PflMI CCANNNNNTGG 1 cut(s) 93
PinAI ACCGGT 1 cut(s) 544
PkrI GCNGC 6 cut(s) 184, 187, 310, 446, 533, 1062
PpuMI RGGWCCY 1 cut(s) 1130
PscI ACATGT 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 1130
Psp6I CCWGG 1 cut(s) 965
PspFI CCCAGC 3 cut(s) 391, 1001, 1118
PspGI CCWGG 1 cut(s) 965
PspN4I GGNNCC 4 cut(s) 9, 920, 1131, 1143
PspPI GGNCC 3 cut(s) 96, 325, 1130
PspPPI RGGWCCY 1 cut(s) 1130
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 3 cut(s) 29, 467, 839
RsaNI GTAC 3 cut(s) 28, 466, 838
SaqAI TTAA 4 cut(s) 462, 612, 1103, 1557
SatI GCNGC 6 cut(s) 183, 186, 309, 445, 532, 1061
Sau3AI GATC 2 cut(s) 580, 1635
Sau96I GGNCC 3 cut(s) 96, 325, 1130
ScaI AGTACT 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 682, 967
SfaNI GCATC 2 cut(s) 278, 1105
SfuI TTCGAA 2 cut(s) 983, 1391
SinI GGWCC 2 cut(s) 96, 1130
SsiI CCGC 9 cut(s) 5, 185, 240, 259, 309, 444, 531, 554, 1061
SspMI CTAG 4 cut(s) 1052, 1301, 1455, 1496
StyD4I CCNGG 2 cut(s) 680, 965
StyI CCWWGG 1 cut(s) 1238
TaaI ACNGT 3 cut(s) 589, 781, 1450
TaiI ACGT 5 cut(s) 29, 267, 348, 477, 666
TaqI TCGA 4 cut(s) 342, 983, 1391, 1445
TatI WGTACW 2 cut(s) 465, 837
TauI GCSGC 5 cut(s) 188, 311, 447, 534, 1063
TfiI GAWTC 4 cut(s) 83, 617, 640, 1324
Tru1I TTAA 4 cut(s) 462, 612, 1103, 1557
Tru9I TTAA 4 cut(s) 462, 612, 1103, 1557
TscAI CASTG 1 cut(s) 594
TseFI GTSAC 1 cut(s) 781
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 781
TspDTI ATGAA 3 cut(s) 553, 887, 911
TspRI CASTG 1 cut(s) 594
Van91I CCANNNNNTGG 1 cut(s) 93
VpaK11BI GGWCC 2 cut(s) 96, 1130
XapI RAATTY 3 cut(s) 227, 1280, 1393
XbaI TCTAGA 1 cut(s) 1495
XceI RCATGY 1 cut(s) 562
XspI CTAG 4 cut(s) 1052, 1301, 1455, 1496
ZraI GACGTC 3 cut(s) 265, 346, 475
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.