Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0012137

Physical Location & Seq

Genomic Coordinates Forward (+)

35719415 .. 35721064

Gene Structure 1650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1274200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1650 bp

ATGGCGGAACACCAAATCTCTAAGACCTTCCCTGTGAAACCCAAGCACAAGCCTAAGCCCCGAACCCCCAAACAAACCTCCGAATCCAAATACTGGTCCTCCTTCAAAACCAAGCAAATCCCTGACCTCATCTCCTCCATCTCCTCCCTCACCTTCTCCCCCACCGCCCCACACTCTTTCGCCGCCGCCCACTCCGCCTCCCTCACCCTCTACAACCCCCTCAACCAATTCTCCCCCACCGCCACCATCTCCGCCTTCCGCGACGTCGTTTCTTCTGCCTCGTTCCGCTGCGATGGCCTCCTCGTTGCCGCCGCCGACCTCTCCGGCCTCGTCCAGGTCTTCGATGTCAAAACCCGAAACCCGCTTCGGAAACTTAAATCCCACACGCGCCCAGCTCGATTCGTCAAATTCCCAGCAGCGGACAAGCTCCATTTGGTCTCTGGCGGCGACGACGCGATTGTCAAGTATTGGGATGTCGCCGGGGAGACCCCGATTTGCGACTTGCTCGGCCACAAGGACTATGTGCGGTGCGGCGATTGCTCGCCGGTCAGTACGGATATGTTCGTAACTGGTTCTTATGATCACACAGTGAAGCTTTGGGATGTGAGGGTTAGAGATTCGGGGTCGGTGATGGAGGTGAATCACGGAAAGCCGGTGGAGGACGTGATTTTCTTGCCATCCGGTGGGTTGATTGCGACGGCCGGCGGCGATTCTGTGAAGATTTGGGATTTGATGGCAGGTGGGAAAATGGTGTATTCAATGGAGAGCCACAACAAGACGGTTACTTCGATTTGTGTCGCGAAAATCGGGAAGGATAGCGGAGAGGAGGCGCAGCAATATAGGATTTTGAGTGTGGCATTGGATGGTTACATGAAGGTGTTTGATTATGCGAAAATGAAGGTCACTCACTCAATGCGGTTCCCTGCACCGCTTATGTCCGTAGGGTTTTCGCCCGATTGTATGACGAGGGTGATTGGAACTTCGAATGGGATGATCTATGCTGGGAGGAGGAAGTACAAGGAAGACGCCGGGGGTGGTTCTGATGAGGAGCTAGATAGGCCGCTTTCGAAGTATGAGAAGAGGGAGAAGAGGTTGAAGGCCTTAGGGGACGCTGGGGGTTTGGGACCTGTGATGGAGGAACCGCAGATTCGGGTTTTAAGGCCTTCGAATTTTAGGTATTTCCATAGAGGGCAAGGGGAGAAGCCGTCCGAGCGGGACTATGTGGTAATGAGGCCAAAGAAAGTGAAATTGGCCGAGCACGACAAGCTATTGAAGAAGTTTAGGCACAAGGATGCTCTGGTGTCTGTCTTGCGCAGCAAGAATCCGGAGAATGTCGTGGCAGTGATGGAGGAATTGGTGGCGAGGAATAAACTGCTGAAGTGCGTGTTGAATTTGGATTCAGAGGAGCTGGAATTGCTGCTGAAGTTCTTGCAGAAGCACTTGACCGTGCCGAGTTACTCGAGGTTGTTGATGGGGTTGACAGAGAAGGTTCTTGAGATGAGGACTGAGGACATTAAAGCTTCCGACGCGTTGAAGGGCCATATTCGAAACCTTAAACGGTCAGTTGAGGAGGAAATACGGATACAACAGTCGTTGCAAGAGATGCAGGGTATAATTTCTCCCTTGTTGAGAATTACTGGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

550

Amino Acids

61.3

Weight (kDa)

9.44

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	44 - 159	3.2e-10	Prp19 WD40 domain
WDR55	PF24796	45 - 176	7.1e-08	WDR55
Beta-prop_WDR5	PF25175	47 - 145	4.3e-07	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	58 - 265	6.8e-17	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	76 - 238	3.1e-19	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	86 - 265	9.2e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta	PF25391	90 - 271	9.4e-13	G protein beta WD-40 repeat protein
Beta-prop_EIPR1	PF23609	102 - 200	1.5e-08	EIPR1 beta-propeller
Beta-prop_WDR41	PF25178	106 - 243	5.3e-07	WDR41
Beta-prop_TEP1_2nd	PF25047	122 - 294	4.7e-11	TEP-1 second beta-propeller
EIF3I	PF24805	124 - 232	1.5e-06	EIF3I
Beta-prop_THOC3	PF25174	140 - 209	1.3e-10	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	141 - 263	2e-19	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	166 - 271	2.1e-07	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	175 - 332	1.5e-11	Prp19 WD40 domain
WDR55	PF24796	189 - 333	3.2e-07	WDR55
Beta-prop_WDR3_1st	PF25173	214 - 328	5.2e-06	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	215 - 332	1.5e-07	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	215 - 321	1.2e-06	WDR5 beta-propeller domain
UTP15_C	PF09384	400 - 542	2.7e-39	UTP15 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47990
fragaria_vesca	FvH4_5g25500
malus_domestica	MD03G1274200.v1.1 MD11G1296600.v1.1
prunus_persica	Prupe.1G201800_v2.0.a1 Prupe.1G201800_v2.0.a1
pyrus_communis	pycom03g21860
rosa_chinensis	RchiOBHm_Chr7g0215731
rosa_laevigata	RLG00000002628 RLG00000002630
rosa_multiflora	Rmu_sc0000898.1_g000015
rosa_roxburghii	Rroxscaffold_3G00243890
rosa_rugosa	Rorug07G0156300
rosa_samantha	Rh7AG293400 Rh7BG285700 Rh7CG313600 Rh7CG313800 Rh7DG296700
rosa_wichuraiana	Rw7G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	728
AasI	GACNNNNNNGTC	1 cut(s)	458
AatII	GACGTC	1 cut(s)	267
Acc16I	TGCGCA	1 cut(s)	1313
Acc36I	ACCTGC	1 cut(s)	728
AccB7I	CCANNNNNTGG	2 cut(s)	93, 683
AccBSI	CCGCTC	1 cut(s)	1213
AccII	CGCG	5 cut(s)	261, 388, 455, 800, 1529
AccIII	TCCGGA	1 cut(s)	1324
AcoI	YGGCCR	3 cut(s)	508, 699, 1251
AcsI	RAATTY	3 cut(s)	407, 1168, 1390
AcuI	CTGAAG	2 cut(s)	1397, 1442
AcyI	GRCGYC	2 cut(s)	264, 1026
AdeI	CACNNNGTG	1 cut(s)	589
AfaI	GTAC	2 cut(s)	553, 1016
AfiI	CCNNNNNNNGG	4 cut(s)	93, 334, 418, 683
AflIII	ACRYGT	1 cut(s)	1527
AgsI	TTSAA	6 cut(s)	106, 759, 1096, 1273, 1390, 1534
AjiI	CACGTC	1 cut(s)	664
AjnI	CCWGG	1 cut(s)	333
AjuI	GAANNNNNNNTTGG	2 cut(s)	1232, 1264
AluBI	AGCT	7 cut(s)	395, 427, 595, 1051, 1267, 1408, 1520
AluI	AGCT	7 cut(s)	395, 427, 595, 1051, 1267, 1408, 1520
Alw21I	GWGCWC	1 cut(s)	1260
Alw26I	GTCTC	2 cut(s)	442, 479
Ama87I	CYCGRG	1 cut(s)	1459
Aor13HI	TCCGGA	1 cut(s)	1324
ApeKI	GCWGC	5 cut(s)	288, 416, 832, 1314, 1417
ApoI	RAATTY	3 cut(s)	407, 1168, 1390
ArsI	GACNNNNNNTTYG	2 cut(s)	769, 801
AspLEI	GCGC	3 cut(s)	390, 832, 1314
AspS9I	GGNCC	3 cut(s)	96, 1124, 1537
AsuC2I	CCSGG	2 cut(s)	481, 1030
AsuHPI	GGTGA	5 cut(s)	142, 196, 640, 649, 982
AsuII	TTCGAA	4 cut(s)	983, 1067, 1166, 1546
AvaI	CYCGRG	1 cut(s)	1459
AvaII	GGWCC	2 cut(s)	96, 1124
AxyI	CCTNAGG	1 cut(s)	1102
BaeI	ACNNNNGTAYC	2 cut(s)	1574, 1607
BbsI	GAAGAC	2 cut(s)	331, 1029
Bbv12I	GWGCWC	1 cut(s)	1260
BbvI	GCAGC	5 cut(s)	275, 428, 844, 1326, 1404
BceAI	ACGGC	2 cut(s)	714, 1189
BciT130I	CCWGG	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	1575
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	2 cut(s)	481, 1030
BcoDI	GTCTC	2 cut(s)	442, 479
BfaI	CTAG	1 cut(s)	1052
BfuAI	ACCTGC	1 cut(s)	728
BfuI	GTATCC	1 cut(s)	1575
Bme1390I	CCNGG	3 cut(s)	335, 481, 1030
Bme18I	GGWCC	2 cut(s)	96, 1124
BmeT110I	CYCGRG	1 cut(s)	1459
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	3 cut(s)	96, 1124, 1537
BmiI	GGNNCC	3 cut(s)	920, 1125, 1140
BmrFI	CCNGG	3 cut(s)	335, 481, 1030
BmsI	GCATC	2 cut(s)	1282, 1593
BpiI	GAAGAC	2 cut(s)	331, 1029
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	4 cut(s)	983, 1067, 1166, 1546
BpuEI	CTTGAG	1 cut(s)	1514
BpuMI	CCSGG	2 cut(s)	481, 1030
BsaHI	GRCGYC	2 cut(s)	264, 1026
BsaI	GGTCTC	2 cut(s)	442, 479
BsaJI	CCNNGG	2 cut(s)	480, 1029
BsaWI	WCCGGW	2 cut(s)	680, 1324
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 334, 418, 683
Bse118I	RCCGGY	3 cut(s)	544, 652, 701
Bse1I	ACTGG	3 cut(s)	98, 574, 1642
Bse21I	CCTNAGG	1 cut(s)	1102
BseAI	TCCGGA	1 cut(s)	1324
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	480, 1029
BseGI	GGATG	6 cut(s)	478, 607, 677, 868, 996, 1297
BseLI	CCNNNNNNNGG	4 cut(s)	93, 334, 418, 683
BseMII	CTCAG	1 cut(s)	1497
BseNI	ACTGG	3 cut(s)	98, 574, 1642
BseRI	GAGGAG	8 cut(s)	124, 133, 290, 839, 1021, 1061, 1418, 1583
BseX3I	CGGCCG	1 cut(s)	699
BseXI	GCAGC	5 cut(s)	275, 428, 844, 1326, 1404
BseYI	CCCAGC	4 cut(s)	391, 412, 1001, 1112
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	5 cut(s)	261, 388, 455, 800, 1529
Bsh1285I	CGRYCG	1 cut(s)	702
BsiEI	CGRYCG	1 cut(s)	702
BsiHKAI	GWGCWC	1 cut(s)	1260
BsiHKCI	CYCGRG	1 cut(s)	1459
BsiSI	CCGG	8 cut(s)	324, 480, 545, 653, 681, 702, 1029, 1325
BslFI	GGGAC	3 cut(s)	1121, 1137, 1229
BslI	CCNNNNNNNGG	4 cut(s)	93, 334, 418, 683
BsmAI	GTCTC	2 cut(s)	442, 479
BsmFI	GGGAC	3 cut(s)	1121, 1137, 1229
Bso31I	GGTCTC	2 cut(s)	442, 479
BsoBI	CYCGRG	1 cut(s)	1459
Bsp119I	TTCGAA	4 cut(s)	983, 1067, 1166, 1546
Bsp1286I	GDGCHC	1 cut(s)	1260
Bsp13I	TCCGGA	1 cut(s)	1324
Bsp143I	GATC	2 cut(s)	580, 993
Bsp68I	TCGCGA	1 cut(s)	800
BspCNI	CTCAG	1 cut(s)	1498
BspEI	TCCGGA	1 cut(s)	1324
BspFNI	CGCG	5 cut(s)	261, 388, 455, 800, 1529
BspLI	GGNNCC	3 cut(s)	920, 1125, 1140
BspMI	ACCTGC	1 cut(s)	728
BspT104I	TTCGAA	4 cut(s)	983, 1067, 1166, 1546
BspTNI	GGTCTC	2 cut(s)	442, 479
BsrBI	CCGCTC	1 cut(s)	1213
BsrFI	RCCGGY	3 cut(s)	544, 652, 701
BsrI	ACTGG	3 cut(s)	98, 574, 1642
BssAI	RCCGGY	3 cut(s)	544, 652, 701
BssECI	CCNNGG	2 cut(s)	480, 1029
BssMI	GATC	2 cut(s)	580, 993
BssNI	GRCGYC	2 cut(s)	264, 1026
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	5 cut(s)	589, 781, 1447, 1560, 1590
Bst6I	CTCTTC	2 cut(s)	1073, 1082
BstACI	GRCGYC	2 cut(s)	264, 1026
BstAPI	GCANNNNNTGC	1 cut(s)	1603
BstBI	TTCGAA	4 cut(s)	983, 1067, 1166, 1546
BstC8I	GCNNGC	2 cut(s)	542, 703
BstDEI	CTNAG	4 cut(s)	21, 54, 1102, 1506
BstENI	CCTNNNNNAGG	1 cut(s)	332
BstF5I	GGATG	6 cut(s)	478, 607, 677, 868, 996, 1297
BstFNI	CGCG	5 cut(s)	261, 388, 455, 800, 1529
BstHHI	GCGC	3 cut(s)	390, 832, 1314
BstKTI	GATC	2 cut(s)	583, 996
BstMAI	GTCTC	2 cut(s)	442, 479
BstMBI	GATC	2 cut(s)	580, 993
BstMCI	CGRYCG	1 cut(s)	702
BstMWI	GCNNNNNNNGC	9 cut(s)	194, 294, 537, 1057, 1210, 1264, 1414, 1526, 1603
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	3 cut(s)	333, 479, 1028
BstUI	CGCG	5 cut(s)	261, 388, 455, 800, 1529
BstV1I	GCAGC	5 cut(s)	275, 428, 844, 1326, 1404
BstV2I	GAAGAC	2 cut(s)	331, 1029
BstZI	CGGCCG	1 cut(s)	699
Bsu36I	CCTNAGG	1 cut(s)	1102
BsuI	GTATCC	1 cut(s)	1575
BtgZI	GCGATG	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	6 cut(s)	478, 607, 677, 868, 996, 1297
BtsI	GCAGTG	1 cut(s)	1347
BtsIMutI	CAGTG	2 cut(s)	594, 1347
BtuMI	TCGCGA	1 cut(s)	800
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	2 cut(s)	542, 703
CfoI	GCGC	3 cut(s)	390, 832, 1314
Cfr10I	RCCGGY	3 cut(s)	544, 652, 701
Cfr13I	GGNCC	3 cut(s)	96, 1124, 1537
CseI	GACGC	4 cut(s)	461, 1034, 1118, 1535
Csp6I	GTAC	2 cut(s)	552, 1015
CviAII	CATG	1 cut(s)	871
CviQI	GTAC	2 cut(s)	552, 1015
DdeI	CTNAG	4 cut(s)	21, 54, 1102, 1506
DpnI	GATC	2 cut(s)	582, 995
DpnII	GATC	2 cut(s)	580, 993
DraIII	CACNNNGTG	1 cut(s)	589
DrdI	GACNNNNNNGTC	1 cut(s)	458
DseDI	GACNNNNNNGTC	1 cut(s)	458
EaeI	YGGCCR	3 cut(s)	508, 699, 1251
EagI	CGGCCG	1 cut(s)	699
Eam1104I	CTCTTC	2 cut(s)	1073, 1082
EarI	CTCTTC	2 cut(s)	1073, 1082
EciI	GGCGGA	3 cut(s)	20, 184, 241
EclXI	CGGCCG	1 cut(s)	699
Eco147I	AGGCCT	2 cut(s)	1100, 1162
Eco31I	GGTCTC	2 cut(s)	442, 479
Eco47I	GGWCC	2 cut(s)	96, 1124
Eco52I	CGGCCG	1 cut(s)	699
Eco57I	CTGAAG	2 cut(s)	1397, 1442
Eco81I	CCTNAGG	1 cut(s)	1102
Eco88I	CYCGRG	1 cut(s)	1459
EcoNI	CCTNNNNNAGG	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	1124
EcoRII	CCWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	874
FaqI	GGGAC	3 cut(s)	1121, 1137, 1229
FatI	CATG	1 cut(s)	870
FauI	CCCGC	2 cut(s)	369, 1206
FbaI	TGATCA	1 cut(s)	580
FokI	GGATG	6 cut(s)	485, 614, 664, 875, 1003, 1304
FspBI	CTAG	1 cut(s)	1052
FspI	TGCGCA	1 cut(s)	1313
GlaI	GCGC	3 cut(s)	389, 831, 1313
GsaI	CCCAGC	4 cut(s)	395, 416, 1005, 1116
HapII	CCGG	8 cut(s)	324, 480, 545, 653, 681, 702, 1029, 1325
HgaI	GACGC	4 cut(s)	461, 1034, 1118, 1535
HhaI	GCGC	3 cut(s)	390, 832, 1314
Hin1I	GRCGYC	2 cut(s)	264, 1026
Hin1II	CATG	1 cut(s)	874
Hin6I	GCGC	3 cut(s)	388, 830, 1312
HinP1I	GCGC	3 cut(s)	388, 830, 1312
HincII	GTYRAC	1 cut(s)	1479
HindII	GTYRAC	1 cut(s)	1479
HindIII	AAGCTT	2 cut(s)	593, 1518
HinfI	GANTC	8 cut(s)	83, 399, 617, 640, 710, 1147, 1321, 1397
HpaII	CCGG	8 cut(s)	324, 480, 545, 653, 681, 702, 1029, 1325
HphI	GGTGA	5 cut(s)	142, 196, 640, 649, 982
Hpy166II	GTNNAC	1 cut(s)	1479
Hpy188I	TCNGA	6 cut(s)	82, 369, 1042, 1210, 1402, 1525
Hpy188III	TCNNGA	4 cut(s)	799, 808, 1325, 1493
Hpy8I	GTNNAC	1 cut(s)	1479
Hpy99I	CGWCG	6 cut(s)	266, 269, 452, 455, 700, 1529
HpyCH4III	ACNGT	5 cut(s)	589, 781, 1447, 1560, 1590
HpyCH4IV	ACGT	2 cut(s)	264, 663
HpyCH4V	TGCA	4 cut(s)	926, 1432, 1597, 1606
HpyF10VI	GCNNNNNNNGC	9 cut(s)	194, 294, 537, 1057, 1210, 1264, 1414, 1526, 1603
HpyF3I	CTNAG	4 cut(s)	21, 54, 1102, 1506
HpySE526I	ACGT	2 cut(s)	264, 663
Hsp92I	GRCGYC	2 cut(s)	264, 1026
Hsp92II	CATG	1 cut(s)	874
HspAI	GCGC	3 cut(s)	388, 830, 1312
Kpn2I	TCCGGA	1 cut(s)	1324
KroI	GCCGGC	1 cut(s)	701
KroNI	GCCGGC	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	580, 993
LmnI	GCTCC	3 cut(s)	432, 1048, 1405
Lsp1109I	GCAGC	5 cut(s)	275, 428, 844, 1326, 1404
LweI	GCATC	2 cut(s)	1282, 1593
MaeI	CTAG	1 cut(s)	1052
MaeII	ACGT	2 cut(s)	264, 663
MaeIII	GTNAC	5 cut(s)	565, 781, 866, 901, 1454
MalI	GATC	2 cut(s)	582, 995
MbiI	CCGCTC	1 cut(s)	1213
MboI	GATC	2 cut(s)	580, 993
MboII	GAAGA	7 cut(s)	264, 331, 730, 1034, 1090, 1099, 1285
MhlI	GDGCHC	1 cut(s)	1260
MluCI	AATT	9 cut(s)	227, 407, 1168, 1247, 1352, 1390, 1412, 1614, 1632
MluI	ACGCGT	1 cut(s)	1527
MmeI	TCCRAC	1 cut(s)	1548
MroI	TCCGGA	1 cut(s)	1324
MroNI	GCCGGC	1 cut(s)	701
MseI	TTAA	4 cut(s)	375, 1157, 1515, 1554
MslI	CAYNNNNRTG	2 cut(s)	875, 1290
MspA1I	CMGCKG	2 cut(s)	288, 419
MspI	CCGG	8 cut(s)	324, 480, 545, 653, 681, 702, 1029, 1325
MspR9I	CCNGG	3 cut(s)	335, 481, 1030
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	5 cut(s)	261, 388, 455, 800, 1529
MwoI	GCNNNNNNNGC	9 cut(s)	194, 294, 537, 1057, 1210, 1264, 1414, 1526, 1603
NaeI	GCCGGC	1 cut(s)	703
NciI	CCSGG	2 cut(s)	481, 1030
NdeII	GATC	2 cut(s)	580, 993
NgoMIV	GCCGGC	1 cut(s)	701
NlaIII	CATG	1 cut(s)	874
NlaIV	GGNNCC	3 cut(s)	920, 1125, 1140
NmeAIII	GCCGAG	3 cut(s)	486, 1279, 1476
NmuCI	GTSAC	1 cut(s)	901
NruI	TCGCGA	1 cut(s)	800
NsbI	TGCGCA	1 cut(s)	1313
NspV	TTCGAA	4 cut(s)	983, 1067, 1166, 1546
PaeR7I	CTCGAG	1 cut(s)	1459
PaqCI	CACCTGC	1 cut(s)	728
PceI	AGGCCT	2 cut(s)	1100, 1162
PcsI	WCGNNNNNNNCGW	1 cut(s)	785
PdiI	GCCGGC	1 cut(s)	703
PfeI	GAWTC	8 cut(s)	83, 399, 617, 640, 710, 1147, 1321, 1397
PflMI	CCANNNNNTGG	2 cut(s)	93, 683
PpuMI	RGGWCCY	1 cut(s)	1124
Psp5II	RGGWCCY	1 cut(s)	1124
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	4 cut(s)	391, 412, 1001, 1112
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	3 cut(s)	920, 1125, 1140
PspPI	GGNCC	3 cut(s)	96, 1124, 1537
PspPPI	RGGWCCY	1 cut(s)	1124
PspXI	VCTCGAGB	1 cut(s)	1459
RruI	TCGCGA	1 cut(s)	800
RsaI	GTAC	2 cut(s)	553, 1016
RsaNI	GTAC	2 cut(s)	552, 1015
RseI	CAYNNNNRTG	2 cut(s)	875, 1290
SaqAI	TTAA	4 cut(s)	375, 1157, 1515, 1554
Sau3AI	GATC	2 cut(s)	580, 993
Sau96I	GGNCC	3 cut(s)	96, 1124, 1537
ScrFI	CCNGG	3 cut(s)	335, 481, 1030
SduI	GDGCHC	1 cut(s)	1260
SfaNI	GCATC	2 cut(s)	1282, 1593
Sfr274I	CTCGAG	1 cut(s)	1459
SfuI	TTCGAA	4 cut(s)	983, 1067, 1166, 1546
SinI	GGWCC	2 cut(s)	96, 1124
SlaI	CTCGAG	1 cut(s)	1459
SmiMI	CAYNNNNRTG	2 cut(s)	875, 1290
SmlI	CTYRAG	2 cut(s)	1459, 1493
SmoI	CTYRAG	2 cut(s)	1459, 1493
Sse9I	AATT	9 cut(s)	227, 407, 1168, 1247, 1352, 1390, 1412, 1614, 1632
SseBI	AGGCCT	2 cut(s)	1100, 1162
SspMI	CTAG	1 cut(s)	1052
StuI	AGGCCT	2 cut(s)	1100, 1162
StyD4I	CCNGG	3 cut(s)	333, 479, 1028
TaaI	ACNGT	5 cut(s)	589, 781, 1447, 1560, 1590
TaiI	ACGT	2 cut(s)	267, 666
TaqI	TCGA	8 cut(s)	342, 397, 788, 983, 1067, 1166, 1460, 1546
TasI	AATT	9 cut(s)	227, 407, 1168, 1247, 1352, 1390, 1412, 1614, 1632
TatI	WGTACW	1 cut(s)	1014
TauI	GCSGC	8 cut(s)	185, 188, 311, 314, 447, 534, 708, 1063
TfiI	GAWTC	8 cut(s)	83, 399, 617, 640, 710, 1147, 1321, 1397
Tru1I	TTAA	4 cut(s)	375, 1157, 1515, 1554
Tru9I	TTAA	4 cut(s)	375, 1157, 1515, 1554
TscAI	CASTG	2 cut(s)	594, 1347
TseFI	GTSAC	1 cut(s)	901
TseI	GCWGC	5 cut(s)	288, 416, 832, 1314, 1417
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	2 cut(s)	887, 911
TspGWI	ACGGA	4 cut(s)	569, 660, 928, 1594
TspRI	CASTG	2 cut(s)	594, 1347
Van91I	CCANNNNNTGG	2 cut(s)	93, 683
VpaK11BI	GGWCC	2 cut(s)	96, 1124
XagI	CCTNNNNNAGG	1 cut(s)	332
XapI	RAATTY	3 cut(s)	407, 1168, 1390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XhoI	CTCGAG	1 cut(s)	1459
XspI	CTAG	1 cut(s)	1052
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.