FvH4_5g31620

Dienelactone hydrolase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
22773266 .. 22777752
4487 bp
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UTR
Exon/CDS
Intron
FvH4_5g31620.t2

Sequence Viewer

Length: 954 bp
ATGGGGATACATTCACTCTCAACTTCTGCTTCCTTAAACTTCTGCAACTTGTCTCTCAATCCCAGAAACCCAACTCTTCACCAATTTGGGTTCCTCTCGACTGCTTTTGCTTCTCCTCTGCGCACCTCTCCAAGCTCAGTTTATGTCCAGAGAGCATGCGATATAAGCTGTCAAAGGCCAGTAGGCAGAAGAGTTAGCTGTAGCTTACTAAAAGTGGAAGAGGACATAAATGACGAGGCATGTGAATTAGTCAGTGGAATTGAACTTTCAGTTGGCGAGGGTGAAGACAGCATCAATGCTCATCTCTTCAAGGCAGTGAAAAATAATAATGGAACTGGGATATTGCTCTTGTCTGATATCTATGGGTTTGAAGATTCATCCACAAGAGAGTTTGCATATCGTGTGGCTTGCAATGGCTATAATGTGTTACTTCCAGACCTATTTCGTGGAGATCCATGGACAAAGCACAAACCAAAGATTTTGTTTGATGAATGGATTTTGAAACAAGAACCTCAGAGGGTTGCAAAAGACATTGCCACATCGGCAAAATGGATGGTGGACGAGTTTTTGGCTGTAGGAATTTCTAAGAAGCTTTGTTTGGTTGGTTTTTGCTTTGGAGGTGGCAAAGTGATTGATGTGCTAGCCAGAGACCAGGGTGCTTATTTTGGTATTGGGGTTTCCTTTTATGGAACAAGGAGTGACCCGAGTGTAGCTTCTGATGTTAAGGTTCCCGTATTGTTTATCTCAGGAGACAATGACCCCCTTTGTCCTGTCAATGTCTTGGAAAACATTGAGAAAAGCATTGGTAGGGGGTCTAGGCTGGTGACTTTCAAGGGAAGAGGTCATGGCTTTGCCCACCGACCTCAGTCTGCTGAAGAAGATGAAGATGCAGAGAAGGCTTTCATGATTATGAGAAATTGGCTCAATGATGGCTTAGTTGCACCAACTGAATAA

Protein Analysis

318

Amino Acids

34.77

Weight (kDa)

5.62

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 98 - 303 3.5e-27 Dienelactone hydrolase family
Abhydrolase_4 PF08386 231 - 284 2.3e-06 TAP-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011294)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 122
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 1 cut(s) 579
AcuI CTGAAG 1 cut(s) 894
AgsI TTSAA 5 cut(s) 263, 310, 371, 502, 832
AjnI CCWGG 1 cut(s) 651
AjuI GAANNNNNNNTTGG 4 cut(s) 255, 287, 581, 613
AluBI AGCT 6 cut(s) 135, 168, 198, 204, 592, 713
AluI AGCT 6 cut(s) 135, 168, 198, 204, 592, 713
Alw26I GTCTC 3 cut(s) 57, 642, 744
AlwI GGATC 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 703
AoxI GGCC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 579
Asp700I GAANNNNTTC 1 cut(s) 899
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 3 cut(s) 71, 293, 835
AsuNHI GCTAGC 1 cut(s) 640
AvaI CYCGRG 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 291
BccI CCATC 2 cut(s) 547, 923
BciT130I CCWGG 1 cut(s) 653
BcoDI GTCTC 3 cut(s) 57, 642, 744
BfaI CTAG 2 cut(s) 641, 816
BfmI CTRYAG 2 cut(s) 199, 573
BglI GCCNNNNNGGC 1 cut(s) 542
Bme1390I CCNGG 1 cut(s) 653
BmeT110I CYCGRG 1 cut(s) 703
BmiI GGNNCC 2 cut(s) 92, 729
BmrFI CCNGG 1 cut(s) 653
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 300, 877
BmtI GCTAGC 1 cut(s) 644
BmuI ACTGGG 1 cut(s) 345
BoxI GACNNNNGTC 1 cut(s) 865
BpiI GAAGAC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 455, 652
Bse1I ACTGG 2 cut(s) 179, 340
Bse3DI GCAATG 2 cut(s) 418, 531
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 2 cut(s) 455, 652
BseGI GGATG 2 cut(s) 377, 558
BseMI GCAATG 2 cut(s) 418, 531
BseMII CTCAG 4 cut(s) 150, 527, 759, 878
BseNI ACTGG 2 cut(s) 179, 340
BseRI GAGGAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 703
BsmAI GTCTC 3 cut(s) 57, 642, 744
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 642
BsoBI CYCGRG 1 cut(s) 703
Bsp143I GATC 1 cut(s) 451
Bsp19I CCATGG 1 cut(s) 455
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 4 cut(s) 149, 526, 758, 877
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 2 cut(s) 92, 729
BspOI GCTAGC 1 cut(s) 644
BspPI GGATC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 642
BsrDI GCAATG 2 cut(s) 418, 531
BsrI ACTGG 2 cut(s) 179, 340
BssECI CCNNGG 2 cut(s) 455, 652
BssMI GATC 1 cut(s) 451
BssT1I CCWWGG 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 653
Bst6I CTCTTC 5 cut(s) 81, 184, 213, 311, 832
BstC8I GCNNGC 3 cut(s) 157, 409, 642
BstDEI CTNAG 6 cut(s) 136, 513, 585, 745, 864, 934
BstDSI CCRYGG 1 cut(s) 455
BstF5I GGATG 2 cut(s) 377, 558
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 3 cut(s) 57, 642, 744
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 3 cut(s) 165, 542, 896
BstNI CCWGG 1 cut(s) 653
BstNSI RCATGY 2 cut(s) 159, 243
BstPAI GACNNNNGTC 1 cut(s) 865
BstSCI CCNGG 1 cut(s) 651
BstSFI CTRYAG 2 cut(s) 199, 573
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 455
BtsCI GGATG 2 cut(s) 377, 558
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 2 cut(s) 259, 321
Cac8I GCNNGC 3 cut(s) 157, 409, 642
CciI TCATGA 1 cut(s) 903
CfoI GCGC 1 cut(s) 123
CviAII CATG 5 cut(s) 156, 240, 456, 845, 904
DdeI CTNAG 6 cut(s) 136, 513, 585, 745, 864, 934
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
Eam1104I CTCTTC 5 cut(s) 81, 184, 213, 311, 832
EarI CTCTTC 5 cut(s) 81, 184, 213, 311, 832
Eco130I CCWWGG 1 cut(s) 455
Eco31I GGTCTC 1 cut(s) 642
Eco32I GATATC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 894
Eco88I CYCGRG 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 651
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 455
FaeI CATG 5 cut(s) 159, 243, 459, 848, 907
FatI CATG 5 cut(s) 155, 239, 455, 844, 903
FokI GGATG 2 cut(s) 364, 565
FspBI CTAG 2 cut(s) 641, 816
FspI TGCGCA 1 cut(s) 122
GlaI GCGC 1 cut(s) 122
HaeIII GGCC 1 cut(s) 178
HhaI GCGC 1 cut(s) 123
Hin1II CATG 5 cut(s) 159, 243, 459, 848, 907
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 1 cut(s) 374
HphI GGTGA 3 cut(s) 71, 293, 835
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 3 cut(s) 355, 516, 718
Hpy188III TCNNGA 5 cut(s) 97, 148, 434, 747, 904
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 1 cut(s) 889
HpyCH4V TGCA 6 cut(s) 45, 395, 411, 524, 890, 941
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 542, 896
HpyF3I CTNAG 6 cut(s) 136, 513, 585, 745, 864, 934
Hsp92II CATG 5 cut(s) 159, 243, 459, 848, 907
HspAI GCGC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 451
LweI GCATC 2 cut(s) 300, 877
MaeI CTAG 2 cut(s) 641, 816
MaeIII GTNAC 3 cut(s) 426, 698, 823
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MflI RGATCY 1 cut(s) 451
MluCI AATT 5 cut(s) 83, 245, 258, 579, 916
MroXI GAANNNNTTC 1 cut(s) 899
MseI TTAA 2 cut(s) 35, 723
MslI CAYNNNNRTG 1 cut(s) 908
MspR9I CCNGG 1 cut(s) 653
MvaI CCWGG 1 cut(s) 653
MwoI GCNNNNNNNGC 3 cut(s) 165, 542, 896
NcoI CCATGG 1 cut(s) 455
NdeII GATC 1 cut(s) 451
NheI GCTAGC 1 cut(s) 640
NlaIII CATG 5 cut(s) 159, 243, 459, 848, 907
NlaIV GGNNCC 2 cut(s) 92, 729
NmuCI GTSAC 2 cut(s) 698, 823
NsbI TGCGCA 1 cut(s) 122
NspI RCATGY 2 cut(s) 159, 243
PaeI GCATGC 1 cut(s) 159
PagI TCATGA 1 cut(s) 903
PdmI GAANNNNTTC 1 cut(s) 899
PfeI GAWTC 1 cut(s) 374
PshAI GACNNNNGTC 1 cut(s) 865
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 2 cut(s) 92, 729
PsuI RGATCY 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 908
SaqAI TTAA 2 cut(s) 35, 723
Sau3AI GATC 1 cut(s) 451
ScrFI CCNGG 1 cut(s) 653
SfaNI GCATC 2 cut(s) 300, 877
SfcI CTRYAG 2 cut(s) 199, 573
SmiMI CAYNNNNRTG 1 cut(s) 908
SphI GCATGC 1 cut(s) 159
Sse9I AATT 5 cut(s) 83, 245, 258, 579, 916
SspMI CTAG 2 cut(s) 641, 816
StyD4I CCNGG 1 cut(s) 651
StyI CCWWGG 1 cut(s) 455
TaqI TCGA 1 cut(s) 98
TasI AATT 5 cut(s) 83, 245, 258, 579, 916
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 35, 723
Tru9I TTAA 2 cut(s) 35, 723
TscAI CASTG 2 cut(s) 259, 321
TseFI GTSAC 2 cut(s) 698, 823
Tsp45I GTSAC 2 cut(s) 698, 823
TspDTI ATGAA 4 cut(s) 366, 504, 892, 897
TspRI CASTG 2 cut(s) 259, 321
XapI RAATTY 1 cut(s) 579
XceI RCATGY 2 cut(s) 159, 243
XmnI GAANNNNTTC 1 cut(s) 899
XspI CTAG 2 cut(s) 641, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.