Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011294

Physical Location & Seq

Genomic Coordinates Reverse (-)

45348094 .. 45350716

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G555600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGATTATACTCAACTGGAAGTGGAGCGGGAAACCCACTCTCTTCCGCTTCCATGAGCACCACGCCTCGTCACCTCTTGCTTCGAAAGCCAACCCCTCGCCATCACCAACTTGGTTTCCTCTCAACCTTCGCTTCTCCTCTTCTGCACACCTCTTCTGGATCAAAAGCATGCAATTCAAGTTGTCAGAGGTGGTCTTCTACAGAGAATATAGGCAGAAAAATTACTTGTAGCCTACTAAAAGTGGAAGACGACGCAAATGACGAGTCATGTGAGTTAGTCAGTGGAGTGGAACTTTCAGTAGGTGAGGGTGTTGATAGCATCAATGCTTATCTCTTCAAGGCAGTGAAAAATAATAATGGAACTGGGATACTTCTCTTGTCCGATATCTTTGGATTTGAGGATTCATCCACAAGAGAGTTTGCCTATCGTGTTGCATGCAGTGGTTACAATGTTTTGCTTCCAGACCTATTTCGTGGAAATCCATGGACAAAGGATCGACCAAAGAATCTTTTTGATAAGTGGATCTCGGAACAAGAACCTCAGAAGGTTGCAAAAGACATTGCCACATCTGCAAAATGGATGGTTGATGAATTTTTGGCTGCAGGAATCTCAAAGAAGCTTGGCTTGATAGGATTTTGCTTTGGAGGTGGCAAAGTGATTGAAGTCCTAGCCCGGGACCAGGGCGCTTATTTTGGCATTGGGGTCTCCTTCTATGGAACAAGGATCGATACGTCTGTGGCATCTAAAATTAAGGTTCCGATCTTGTTTATTTCCGGGGACAACGACCCACTCTGTCCTGTCAATGTCCTAGAGAGTATTGAGAGAAGCATTGGCAGGGGGTCCAGGGTGGTAGTTTTCAAGGGTAGAGGTCATGGCTTTGCTCACCGACCTCAATCGTTTGAAGAAGACGAAGATGCAGAGCAGGCTTTCATGATGATGAGAAATTGGCTGAATGATGGCTTGGTTGCAAATACCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

328

Amino Acids

35.64

Weight (kDa)

6.6

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35420 AT1G35420 AT1G35420
fragaria_vesca	FvH4_5g31620 FvH4_5g31620
malus_domestica	MD08G1217800.v1.1
prunus_persica	Prupe.1G555600_v2.0.a1
pyrus_communis	pycom08g18880
rosa_chinensis	RchiOBHm_Chr7g0227151
rosa_laevigata	RLG00000001664
rosa_multiflora	Rmu_co8431879.1_g000001 Rmu_sc0003153.1_g000019
rosa_roxburghii	Rroxscaffold_3G00232270
rosa_rugosa	Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh7AG390900 Rh7BG375900 Rh7CG409900 Rh7DG388200
rosa_wichuraiana	Rw7G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	29
AciI	CCGC	2 cut(s)	29, 48
AclWI	GGATC	4 cut(s)	169, 504, 533, 734
AcsI	RAATTY	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	676, 682
AgsI	TTSAA	5 cut(s)	180, 340, 665, 862, 905
AjnI	CCWGG	2 cut(s)	681, 845
AjuI	GAANNNNNNNTTGG	2 cut(s)	947, 979
AluBI	AGCT	1 cut(s)	622
AluI	AGCT	1 cut(s)	622
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	712
AlwI	GGATC	4 cut(s)	169, 504, 533, 734
Ama87I	CYCGRG	1 cut(s)	675
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	593
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	679, 843
AsuC2I	CCSGG	3 cut(s)	676, 677, 778
AsuHPI	GGTGA	4 cut(s)	65, 98, 317, 878
AsuII	TTCGAA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	675
AvaII	GGWCC	2 cut(s)	679, 843
BaeI	ACNNNNGTAYC	2 cut(s)	723, 756
BbsI	GAAGAC	3 cut(s)	189, 255, 915
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	3 cut(s)	111, 577, 953
BciT130I	CCWGG	2 cut(s)	683, 847
BciVI	GTATCC	1 cut(s)	363
BcnI	CCSGG	3 cut(s)	676, 677, 778
BcoDI	GTCTC	1 cut(s)	712
BfaI	CTAG	2 cut(s)	671, 812
BfmI	CTRYAG	2 cut(s)	201, 603
BfoI	RGCGCY	1 cut(s)	690
BfuI	GTATCC	1 cut(s)	363
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
Bme1390I	CCNGG	5 cut(s)	676, 677, 683, 778, 847
Bme18I	GGWCC	2 cut(s)	679, 843
BmeT110I	CYCGRG	1 cut(s)	675
BmgT120I	GGNCC	2 cut(s)	679, 843
BmiI	GGNNCC	3 cut(s)	680, 759, 844
BmrFI	CCNGG	5 cut(s)	676, 677, 683, 778, 847
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	3 cut(s)	330, 752, 907
BmuI	ACTGGG	1 cut(s)	375
BpiI	GAAGAC	3 cut(s)	189, 255, 915
Bpu14I	TTCGAA	1 cut(s)	85
BpuMI	CCSGG	3 cut(s)	676, 677, 778
Bsa29I	ATCGAT	1 cut(s)	729
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	5 cut(s)	485, 675, 682, 777, 846
Bsc4I	CCNNNNNNNGG	2 cut(s)	676, 682
Bse1I	ACTGG	2 cut(s)	22, 370
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	683, 847
BseCI	ATCGAT	1 cut(s)	729
BseDI	CCNNGG	5 cut(s)	485, 675, 682, 777, 846
BseGI	GGATG	2 cut(s)	407, 588
BseLI	CCNNNNNNNGG	2 cut(s)	676, 682
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	2 cut(s)	22, 370
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	589
BsgI	GTGCAG	1 cut(s)	131
BshVI	ATCGAT	1 cut(s)	729
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	675
BsiSI	CCGG	2 cut(s)	676, 777
BslFI	GGGAC	2 cut(s)	692, 794
BslI	CCNNNNNNNGG	2 cut(s)	676, 682
BsmAI	GTCTC	1 cut(s)	712
BsmFI	GGGAC	2 cut(s)	692, 794
Bso31I	GGTCTC	1 cut(s)	712
BsoBI	CYCGRG	1 cut(s)	675
Bsp119I	TTCGAA	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	5 cut(s)	161, 496, 525, 726, 762
Bsp19I	CCATGG	1 cut(s)	485
BspACI	CCGC	2 cut(s)	29, 48
BspCNI	CTCAG	1 cut(s)	556
BspDI	ATCGAT	1 cut(s)	729
BspHI	TCATGA	1 cut(s)	933
BspLI	GGNNCC	3 cut(s)	680, 759, 844
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	4 cut(s)	169, 504, 533, 734
BspT104I	TTCGAA	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	712
BsrBI	CCGCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	22, 370
BssECI	CCNNGG	5 cut(s)	485, 675, 682, 777, 846
BssMI	GATC	5 cut(s)	161, 496, 525, 726, 762
BssT1I	CCWWGG	1 cut(s)	485
Bst2UI	CCWGG	2 cut(s)	683, 847
Bst6I	CTCTTC	4 cut(s)	49, 147, 160, 341
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	3 cut(s)	172, 439, 927
BstDEI	CTNAG	1 cut(s)	543
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	2 cut(s)	407, 588
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	5 cut(s)	164, 499, 528, 729, 765
BstMAI	GTCTC	1 cut(s)	712
BstMBI	GATC	5 cut(s)	161, 496, 525, 726, 762
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 572, 926
BstNI	CCWGG	2 cut(s)	683, 847
BstNSI	RCATGY	2 cut(s)	174, 441
BstSCI	CCNGG	5 cut(s)	674, 675, 681, 776, 845
BstSFI	CTRYAG	2 cut(s)	201, 603
BstV1I	GCAGC	1 cut(s)	589
BstV2I	GAAGAC	3 cut(s)	189, 255, 915
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
Bsu15I	ATCGAT	1 cut(s)	729
BsuI	GTATCC	1 cut(s)	363
BsuTUI	ATCGAT	1 cut(s)	729
BtgI	CCRYGG	1 cut(s)	485
BtsCI	GGATG	2 cut(s)	407, 588
BtsI	GCAGTG	2 cut(s)	351, 448
BtsIMutI	CAGTG	3 cut(s)	289, 351, 448
Cac8I	GCNNGC	3 cut(s)	172, 439, 927
CciI	TCATGA	1 cut(s)	933
CfoI	GCGC	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	679, 843
Cfr9I	CCCGGG	1 cut(s)	675
ClaI	ATCGAT	1 cut(s)	729
CseI	GACGC	1 cut(s)	263
CviAII	CATG	7 cut(s)	55, 171, 270, 438, 486, 875, 934
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	5 cut(s)	163, 498, 527, 728, 764
DpnII	GATC	5 cut(s)	161, 496, 525, 726, 762
Eam1104I	CTCTTC	4 cut(s)	49, 147, 160, 341
EarI	CTCTTC	4 cut(s)	49, 147, 160, 341
Eco130I	CCWWGG	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	712
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	679, 843
Eco88I	CYCGRG	1 cut(s)	675
EcoRII	CCWGG	2 cut(s)	681, 845
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	7 cut(s)	58, 174, 273, 441, 489, 878, 937
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	2 cut(s)	692, 794
FatI	CATG	7 cut(s)	54, 170, 269, 437, 485, 874, 933
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	2 cut(s)	394, 595
Fsp4HI	GCNGC	1 cut(s)	603
FspBI	CTAG	2 cut(s)	671, 812
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	1 cut(s)	603
HaeII	RGCGCY	1 cut(s)	690
HapII	CCGG	2 cut(s)	676, 777
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	689
Hin1II	CATG	7 cut(s)	58, 174, 273, 441, 489, 878, 937
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	4 cut(s)	266, 404, 508, 609
HpaII	CCGG	2 cut(s)	676, 777
HphI	GGTGA	4 cut(s)	65, 98, 317, 878
Hpy188I	TCNGA	5 cut(s)	189, 385, 532, 546, 762
Hpy188III	TCNNGA	3 cut(s)	159, 464, 934
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	139, 541, 721
HpyCH4IV	ACGT	1 cut(s)	734
HpyCH4V	TGCA	9 cut(s)	148, 174, 437, 441, 554, 575, 605, 920, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 572, 926
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	1 cut(s)	734
Hsp92II	CATG	7 cut(s)	58, 174, 273, 441, 489, 878, 937
HspAI	GCGC	1 cut(s)	687
Kzo9I	GATC	5 cut(s)	161, 496, 525, 726, 762
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	3 cut(s)	330, 752, 907
MaeI	CTAG	2 cut(s)	671, 812
MaeII	ACGT	1 cut(s)	734
MaeIII	GTNAC	2 cut(s)	71, 446
MalI	GATC	5 cut(s)	163, 498, 527, 728, 764
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	5 cut(s)	161, 496, 525, 726, 762
MboII	GAAGA	9 cut(s)	36, 134, 147, 189, 260, 328, 917, 920, 926
MflI	RGATCY	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	5 cut(s)	175, 222, 593, 750, 946
MlyI	GAGTC	1 cut(s)	275
MseI	TTAA	1 cut(s)	753
MslI	CAYNNNNRTG	1 cut(s)	938
MspI	CCGG	2 cut(s)	676, 777
MspR9I	CCNGG	5 cut(s)	676, 677, 683, 778, 847
MvaI	CCWGG	2 cut(s)	683, 847
MwoI	GCNNNNNNNGC	3 cut(s)	88, 572, 926
NciI	CCSGG	3 cut(s)	676, 677, 778
NcoI	CCATGG	1 cut(s)	485
NdeII	GATC	5 cut(s)	161, 496, 525, 726, 762
NlaIII	CATG	7 cut(s)	58, 174, 273, 441, 489, 878, 937
NlaIV	GGNNCC	3 cut(s)	680, 759, 844
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	2 cut(s)	174, 441
NspV	TTCGAA	1 cut(s)	85
PaeI	GCATGC	2 cut(s)	174, 441
PagI	TCATGA	1 cut(s)	933
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	404, 508, 609
PkrI	GCNGC	1 cut(s)	604
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp6I	CCWGG	2 cut(s)	681, 845
PspGI	CCWGG	2 cut(s)	681, 845
PspN4I	GGNNCC	3 cut(s)	680, 759, 844
PspPI	GGNCC	2 cut(s)	679, 843
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	938
SaqAI	TTAA	1 cut(s)	753
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	5 cut(s)	161, 496, 525, 726, 762
Sau96I	GGNCC	2 cut(s)	679, 843
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	5 cut(s)	676, 677, 683, 778, 847
SduI	GDGCHC	1 cut(s)	62
SfaNI	GCATC	3 cut(s)	330, 752, 907
SfcI	CTRYAG	2 cut(s)	201, 603
SfuI	TTCGAA	1 cut(s)	85
SinI	GGWCC	2 cut(s)	679, 843
SmaI	CCCGGG	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	938
SphI	GCATGC	2 cut(s)	174, 441
Sse9I	AATT	5 cut(s)	175, 222, 593, 750, 946
SsiI	CCGC	2 cut(s)	29, 48
SspMI	CTAG	2 cut(s)	671, 812
StyD4I	CCNGG	5 cut(s)	674, 675, 681, 776, 845
StyI	CCWWGG	1 cut(s)	485
TaiI	ACGT	1 cut(s)	737
TaqI	TCGA	3 cut(s)	85, 499, 729
TasI	AATT	5 cut(s)	175, 222, 593, 750, 946
TfiI	GAWTC	3 cut(s)	404, 508, 609
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	3 cut(s)	289, 351, 448
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	3 cut(s)	396, 606, 922
TspMI	CCCGGG	1 cut(s)	675
TspRI	CASTG	3 cut(s)	289, 351, 448
VpaK11BI	GGWCC	2 cut(s)	679, 843
XapI	RAATTY	1 cut(s)	593
XceI	RCATGY	2 cut(s)	174, 441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmaI	CCCGGG	1 cut(s)	675
XspI	CTAG	2 cut(s)	671, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.