Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8431879.1

Orthogroup ID

OG0011294

Physical Location & Seq

Genomic Coordinates Reverse (-)

451 .. 1466

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8431879.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgcgatataggtcgtcgaaagttagtaggcagaagattggcgagggtgaagatagcatcaatgctcatctcttcaaggcagtgaaaaataataatggaaccgggatattgctcttgtctgatatctttggatttgaagattcatccacaagagagtttgcatatcgtgttgcttgcaatggttataatgtcttacttccagacctatttcgtgaagatccatggacaaaggacagaccaaagattttgtttgatgaatggattgtgaaacaagaacctcagagggttgcaaaagacattgccacatcggcaaaatggatggttgacgaatttttggctgcaggaatctcaaagaagcttggtttggttggtttttgctttggaggtggcaaagtgattgatgtgctagccagagaccagggtgcttattttggtattggggtctccttttatggaacaaggatggacctgagcgtagcttctgatattaaggtccctgtattgtttatctcaggggacaatgacccactttgtcctgtcaatgtcctggagaacattgagaaaagcattggtagggggtctaggttggtgactttcaagggaagaggtcatggctttgctcaccgacctcagtctactgaagaagatgaagatgcagagaaagctttcacgattatgagaaattggctcaatgatggcttggttgcaccaactgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

239

Amino Acids

26.59

Weight (kDa)

6.01

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35420 AT1G35420 AT1G35420
fragaria_vesca	FvH4_5g31620 FvH4_5g31620
malus_domestica	MD08G1217800.v1.1
prunus_persica	Prupe.1G555600_v2.0.a1
pyrus_communis	pycom08g18880
rosa_chinensis	RchiOBHm_Chr7g0227151
rosa_laevigata	RLG00000001664
rosa_multiflora	Rmu_co8431879.1_g000001 Rmu_sc0003153.1_g000019
rosa_roxburghii	Rroxscaffold_3G00232270
rosa_rugosa	Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh7AG390900 Rh7BG375900 Rh7CG409900 Rh7DG388200
rosa_wichuraiana	Rw7G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	635
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	660
AgsI	TTSAA	3 cut(s)	76, 137, 598
AjnI	CCWGG	2 cut(s)	417, 546
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	3 cut(s)	358, 479, 665
AluI	AGCT	3 cut(s)	358, 479, 665
Alw26I	GTCTC	2 cut(s)	408, 448
AlwI	GGATC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	665
AspS9I	GGNCC	2 cut(s)	466, 493
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	59, 601, 614
AsuNHI	GCTAGC	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	466, 493
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	3 cut(s)	313, 457, 689
BciT130I	CCWGG	2 cut(s)	419, 548
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	408, 448
BfaI	CTAG	2 cut(s)	407, 582
BfmI	CTRYAG	1 cut(s)	339
BglI	GCCNNNNNGGC	1 cut(s)	308
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	3 cut(s)	103, 419, 548
Bme18I	GGWCC	2 cut(s)	466, 493
BmgT120I	GGNCC	2 cut(s)	466, 493
BmiI	GGNNCC	2 cut(s)	100, 495
BmrFI	CCNGG	3 cut(s)	103, 419, 548
BmsI	GCATC	2 cut(s)	66, 643
BmtI	GCTAGC	1 cut(s)	410
BoxI	GACNNNNGTC	1 cut(s)	631
BpmI	CTGGAG	1 cut(s)	569
Bpu10I	CCTNAGC	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	103
BsaI	GGTCTC	2 cut(s)	408, 448
BsaJI	CCNNGG	2 cut(s)	221, 418
Bse3DI	GCAATG	2 cut(s)	184, 297
BseBI	CCWGG	2 cut(s)	419, 548
BseDI	CCNNGG	2 cut(s)	221, 418
BseGI	GGATG	3 cut(s)	143, 324, 468
BseMI	GCAATG	2 cut(s)	184, 297
BseMII	CTCAG	4 cut(s)	293, 461, 525, 644
BseXI	GCAGC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	479, 530
BsmAI	GTCTC	2 cut(s)	408, 448
BsmFI	GGGAC	2 cut(s)	479, 530
Bso31I	GGTCTC	2 cut(s)	408, 448
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	221
BspCNI	CTCAG	4 cut(s)	292, 462, 524, 643
BspLI	GGNNCC	2 cut(s)	100, 495
BspMAI	CTGCAG	1 cut(s)	343
BspOI	GCTAGC	1 cut(s)	410
BspPI	GGATC	1 cut(s)	212
BspTNI	GGTCTC	2 cut(s)	408, 448
BsrDI	GCAATG	2 cut(s)	184, 297
BssECI	CCNNGG	2 cut(s)	221, 418
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	221
Bst2UI	CCWGG	2 cut(s)	419, 548
Bst6I	CTCTTC	2 cut(s)	77, 598
BstC8I	GCNNGC	2 cut(s)	175, 408
BstDEI	CTNAG	4 cut(s)	279, 470, 511, 630
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	3 cut(s)	143, 324, 468
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	408, 448
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 662
BstNI	CCWGG	2 cut(s)	419, 548
BstPAI	GACNNNNGTC	1 cut(s)	631
BstSCI	CCNGG	3 cut(s)	101, 417, 546
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BtgI	CCRYGG	1 cut(s)	221
BtsCI	GGATG	3 cut(s)	143, 324, 468
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	175, 408
Cfr13I	GGNCC	2 cut(s)	466, 493
CviAII	CATG	2 cut(s)	222, 611
CviJI	RGCY	8 cut(s)	338, 358, 410, 479, 615, 665, 688, 699
CviKI_1	RGCY	8 cut(s)	338, 358, 410, 479, 615, 665, 688, 699
DdeI	CTNAG	4 cut(s)	279, 470, 511, 630
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	77, 598
EarI	CTCTTC	2 cut(s)	77, 598
Eco130I	CCWWGG	1 cut(s)	221
Eco31I	GGTCTC	2 cut(s)	408, 448
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	466, 493
Eco57I	CTGAAG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	417, 546
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	2 cut(s)	225, 614
FaiI	YATR	7 cut(s)	9, 163, 186, 223, 453, 612, 677
FaqI	GGGAC	2 cut(s)	479, 530
FatI	CATG	2 cut(s)	221, 610
FblI	GTMKAC	1 cut(s)	635
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	3 cut(s)	130, 331, 475
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	407, 582
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	569
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	2 cut(s)	225, 614
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	2 cut(s)	356, 663
HinfI	GANTC	2 cut(s)	140, 345
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	3 cut(s)	59, 601, 614
Hpy166II	GTNNAC	2 cut(s)	325, 636
Hpy188I	TCNGA	3 cut(s)	121, 282, 484
Hpy188III	TCNNGA	3 cut(s)	200, 212, 670
Hpy8I	GTNNAC	2 cut(s)	325, 636
Hpy99I	CGWCG	1 cut(s)	19
HpyCH4V	TGCA	6 cut(s)	161, 177, 290, 341, 656, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 662
HpyF3I	CTNAG	4 cut(s)	279, 470, 511, 630
Hsp92II	CATG	2 cut(s)	225, 614
Kzo9I	GATC	1 cut(s)	217
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	2 cut(s)	66, 643
MaeI	CTAG	2 cut(s)	407, 582
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	9 cut(s)	46, 62, 64, 149, 227, 615, 653, 656, 662
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	2 cut(s)	329, 682
MnlI	CCTC	6 cut(s)	37, 276, 288, 377, 599, 639
MroXI	GAANNNNTTC	1 cut(s)	665
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	674
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	103, 419, 548
MvaI	CCWGG	2 cut(s)	419, 548
MwoI	GCNNNNNNNGC	2 cut(s)	308, 662
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	221
NdeII	GATC	1 cut(s)	217
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	2 cut(s)	225, 614
NlaIV	GGNNCC	2 cut(s)	100, 495
NmuCI	GTSAC	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	665
PfeI	GAWTC	2 cut(s)	140, 345
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	493
PshAI	GACNNNNGTC	1 cut(s)	631
PsiI	TTATAA	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	493
Psp6I	CCWGG	2 cut(s)	417, 546
PspGI	CCWGG	2 cut(s)	417, 546
PspN4I	GGNNCC	2 cut(s)	100, 495
PspPI	GGNCC	2 cut(s)	466, 493
PspPPI	RGGWCCY	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	674
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	466, 493
ScrFI	CCNGG	3 cut(s)	103, 419, 548
SfaNI	GCATC	2 cut(s)	66, 643
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	2 cut(s)	466, 493
SmiMI	CAYNNNNRTG	1 cut(s)	674
Sse9I	AATT	2 cut(s)	329, 682
SspMI	CTAG	2 cut(s)	407, 582
StyD4I	CCNGG	3 cut(s)	101, 417, 546
StyI	CCWWGG	1 cut(s)	221
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	329, 682
TfiI	GAWTC	2 cut(s)	140, 345
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	3 cut(s)	132, 270, 663
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	2 cut(s)	466, 493
XapI	RAATTY	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	635
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	2 cut(s)	407, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.