Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011294

Physical Location & Seq

Genomic Coordinates Forward (+)

28048351 .. 28050931

Gene Structure 2581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1217800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAAAGATATGAATTGGCTGTTATACTCAACTGGAAGTGGGAGGCTGCCAACGCCACAGCCGTCGTCGGCGGCTTCAATGTTTCTCAGAAGCAAAACAAAAACAAGAAGCAGCAGCCTAAATCATCGATTCGATTTCCTCTCAACATTTTCTGCTTCTCCTCTGCGCGCCGCCGCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCAACGCAACGCAGCGCAAGTCGTCGGAGGTCAGCTGCAGCGAGTACAGGCACAAGAGTTGCTTGTAGCCTACTAAAAGCGGAAGACAGCGTAAATGACGACGAAACATGTGAGCTGGTCAGTGGATTTGAAGTTTCAGTTGACGGCGAGGGTGTTGACGGTACCATCAACGCTTATCTCTTCAAGGCAGTAAAAAACAACAACGGAATTGGGATACTTCTCTTGTCTGACATCTTTGGCTTCGAAGATTCATCCACCAGAGAGTTTGCATATCGCATTGCCTGCAGCGGTTACAACGTTTTACTTCCGGACCTGTTTCGCGGAGATCCATGGACAAGGGACCGCCCGAAGATTGATTTTGAGAAGTGGATTGCTAACCAAGAAGCTCAAAGGGTTGCGAAAGACATCGCCGCGTGTGCAAAATGGATGGTTGATGAGTTTGCGGCTGCAGGGATCTCAAACAAGCTTGGCTTGATAGGGTTCTGCTACGGAGGTGGCAAAGTGATTGAGGTGCTGGCGCAGGACCAGGGCGCTTATTTCGGGATTGGGGTCTCCTTCTACGGAACAAGGATGGACGACACATCTGCAGCTTCGAATGTGAAGGTTCCTGTATTGTTTATTACGGGGGACAACGACCCGCTGTGTCGTGTGAGCGTGGTAGAAAGTATTGAGAAAACCATCGGCAGGGGATCGAGGGTGGTGAGTTTCAAGGGAAGAGGTCATGGCTTTGCGCACCGACCTCAGTCGTTTGAAGAAGATGAAGATGCAGAGAAAGCTTTCACTTTGATGAGAAATTGGCTACATGATGGCTTGCTTGCAAATGCAAATGCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

347

Amino Acids

37.5

Weight (kDa)

6.46

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DLH	PF01738	124 - 336	4.8e-29	Dienelactone hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35420 AT1G35420 AT1G35420
fragaria_vesca	FvH4_5g31620 FvH4_5g31620
malus_domestica	MD08G1217800.v1.1
prunus_persica	Prupe.1G555600_v2.0.a1
pyrus_communis	pycom08g18880
rosa_chinensis	RchiOBHm_Chr7g0227151
rosa_laevigata	RLG00000001664
rosa_multiflora	Rmu_co8431879.1_g000001 Rmu_sc0003153.1_g000019
rosa_roxburghii	Rroxscaffold_3G00232270
rosa_rugosa	Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh7AG390900 Rh7BG375900 Rh7CG409900 Rh7DG388200
rosa_wichuraiana	Rw7G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	936
Acc36I	ACCTGC	1 cut(s)	1025
Acc65I	GGTACC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	365
AccII	CGCG	3 cut(s)	168, 525, 617
AccIII	TCCGGA	1 cut(s)	511
AclI	AACGTT	1 cut(s)	501
AclWI	GGATC	3 cut(s)	524, 665, 901
AfaI	GTAC	2 cut(s)	250, 367
AfiI	CCNNNNNNNGG	1 cut(s)	888
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	5 cut(s)	78, 335, 388, 913, 956
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	6 cut(s)	239, 319, 590, 670, 794, 980
AluI	AGCT	6 cut(s)	239, 319, 590, 670, 794, 980
Alw26I	GTCTC	1 cut(s)	760
AlwI	GGATC	3 cut(s)	524, 665, 901
Aor13HI	TCCGGA	1 cut(s)	511
ApeKI	GCWGC	9 cut(s)	46, 111, 114, 216, 239, 242, 489, 650, 791
Asp700I	GAANNNNTTC	1 cut(s)	980
Asp718I	GGTACC	1 cut(s)	365
AspLEI	GCGC	6 cut(s)	168, 170, 221, 724, 737, 937
AspS9I	GGNCC	3 cut(s)	514, 544, 727
AsuHPI	GGTGA	1 cut(s)	916
AsuII	TTCGAA	2 cut(s)	447, 797
AvaII	GGWCC	3 cut(s)	514, 544, 727
BanI	GGYRCC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	294
BbvI	GCAGC	9 cut(s)	33, 123, 126, 226, 228, 254, 501, 637, 803
BccI	CCATC	5 cut(s)	377, 625, 769, 890, 1004
BceAI	ACGGC	2 cut(s)	46, 364
BcgI	CGANNNNNNTGC	2 cut(s)	770, 804
BciT130I	CCWGG	1 cut(s)	731
BciVI	GTATCC	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	760
BfmI	CTRYAG	4 cut(s)	240, 487, 651, 789
BfoI	RGCGCY	1 cut(s)	738
BfuAI	ACCTGC	1 cut(s)	1025
BfuI	GTATCC	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	731
Bme18I	GGWCC	3 cut(s)	514, 544, 727
BmgT120I	GGNCC	3 cut(s)	514, 544, 727
BmiI	GGNNCC	3 cut(s)	367, 545, 810
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	1 cut(s)	958
BoxI	GACNNNNGTC	1 cut(s)	946
BpiI	GAAGAC	1 cut(s)	294
Bpu14I	TTCGAA	2 cut(s)	447, 797
Bsa29I	ATCGAT	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	760
BsaJI	CCNNGG	2 cut(s)	533, 730
BsaWI	WCCGGW	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	1 cut(s)	888
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	480
BseAI	TCCGGA	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	731
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	533, 730
BseGI	GGATG	3 cut(s)	455, 636, 780
BseLI	CCNNNNNNNGG	1 cut(s)	888
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	100, 959
BseNI	ACTGG	1 cut(s)	37
BsePI	GCGCGC	1 cut(s)	166
BseRI	GAGGAG	9 cut(s)	150, 172, 175, 178, 181, 184, 187, 190, 193
BseXI	GCAGC	9 cut(s)	33, 123, 126, 226, 228, 254, 501, 637, 803
Bsh1236I	CGCG	3 cut(s)	168, 525, 617
BshNI	GGYRCC	1 cut(s)	365
BshVI	ATCGAT	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	512
BslFI	GGGAC	2 cut(s)	557, 845
BslI	CCNNNNNNNGG	1 cut(s)	888
BsmAI	GTCTC	1 cut(s)	760
BsmFI	GGGAC	2 cut(s)	557, 845
Bso31I	GGTCTC	1 cut(s)	760
Bsp119I	TTCGAA	2 cut(s)	447, 797
Bsp13I	TCCGGA	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	529, 657, 893
Bsp19I	CCATGG	1 cut(s)	533
BspCNI	CTCAG	2 cut(s)	99, 958
BspDI	ATCGAT	1 cut(s)	127
BspEI	TCCGGA	1 cut(s)	511
BspFNI	CGCG	3 cut(s)	168, 525, 617
BspLI	GGNNCC	3 cut(s)	367, 545, 810
BspMAI	CTGCAG	4 cut(s)	244, 491, 655, 793
BspMI	ACCTGC	1 cut(s)	1025
BspPI	GGATC	3 cut(s)	524, 665, 901
BspT104I	TTCGAA	2 cut(s)	447, 797
BspT107I	GGYRCC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	760
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	533, 730
BssHII	GCGCGC	1 cut(s)	166
BssMI	GATC	3 cut(s)	529, 657, 893
BssT1I	CCWWGG	1 cut(s)	533
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	2 cut(s)	389, 913
BstAPI	GCANNNNNTGC	1 cut(s)	486
BstBI	TTCGAA	2 cut(s)	447, 797
BstC8I	GCNNGC	5 cut(s)	168, 487, 720, 1016, 1020
BstDEI	CTNAG	2 cut(s)	86, 945
BstDSI	CCRYGG	1 cut(s)	533
BstF5I	GGATG	3 cut(s)	455, 636, 780
BstFNI	CGCG	3 cut(s)	168, 525, 617
BstH2I	RGCGCY	1 cut(s)	738
BstHHI	GCGC	6 cut(s)	168, 170, 221, 724, 737, 937
BstKTI	GATC	3 cut(s)	532, 660, 896
BstMAI	GTCTC	1 cut(s)	760
BstMBI	GATC	3 cut(s)	529, 657, 893
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 486, 620, 977
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	1 cut(s)	315
BstPAI	GACNNNNGTC	1 cut(s)	946
BstSCI	CCNGG	1 cut(s)	729
BstSFI	CTRYAG	4 cut(s)	240, 487, 651, 789
BstUI	CGCG	3 cut(s)	168, 525, 617
BstV1I	GCAGC	9 cut(s)	33, 123, 126, 226, 228, 254, 501, 637, 803
BstV2I	GAAGAC	1 cut(s)	294
BstX2I	RGATCY	2 cut(s)	529, 657
BstYI	RGATCY	2 cut(s)	529, 657
Bsu15I	ATCGAT	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	411
BsuTUI	ATCGAT	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	533
BtgZI	GCGATG	1 cut(s)	595
BtsCI	GGATG	3 cut(s)	455, 636, 780
BtsIMutI	CAGTG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	1025
Cac8I	GCNNGC	5 cut(s)	168, 487, 720, 1016, 1020
CfoI	GCGC	6 cut(s)	168, 170, 221, 724, 737, 937
Cfr13I	GGNCC	3 cut(s)	514, 544, 727
ClaI	ATCGAT	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	249, 366
CviAII	CATG	4 cut(s)	312, 534, 926, 1007
CviQI	GTAC	2 cut(s)	249, 366
DdeI	CTNAG	2 cut(s)	86, 945
DpnI	GATC	3 cut(s)	531, 659, 895
DpnII	GATC	3 cut(s)	529, 657, 893
Eam1104I	CTCTTC	2 cut(s)	389, 913
EarI	CTCTTC	2 cut(s)	389, 913
Eco130I	CCWWGG	1 cut(s)	533
Eco31I	GGTCTC	1 cut(s)	760
Eco47I	GGWCC	3 cut(s)	514, 544, 727
EcoRII	CCWGG	1 cut(s)	729
EcoT14I	CCWWGG	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	533
FaeI	CATG	4 cut(s)	315, 537, 929, 1010
FaiI	YATR	7 cut(s)	11, 25, 313, 475, 535, 927, 1008
FalI	AAGNNNNNCTT	4 cut(s)	250, 282, 659, 691
FaqI	GGGAC	2 cut(s)	557, 845
FatI	CATG	4 cut(s)	311, 533, 925, 1006
FauI	CCCGC	1 cut(s)	849
FokI	GGATG	3 cut(s)	442, 643, 787
FspI	TGCGCA	1 cut(s)	936
GlaI	GCGC	6 cut(s)	167, 169, 220, 723, 736, 936
HaeII	RGCGCY	1 cut(s)	738
HapII	CCGG	1 cut(s)	512
HhaI	GCGC	6 cut(s)	168, 170, 221, 724, 737, 937
Hin1II	CATG	4 cut(s)	315, 537, 929, 1010
Hin6I	GCGC	6 cut(s)	166, 168, 219, 722, 735, 935
HinP1I	GCGC	6 cut(s)	166, 168, 219, 722, 735, 935
HincII	GTYRAC	2 cut(s)	346, 361
HindII	GTYRAC	2 cut(s)	346, 361
HindIII	AAGCTT	2 cut(s)	668, 978
HinfI	GANTC	2 cut(s)	129, 452
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	1 cut(s)	916
Hpy166II	GTNNAC	2 cut(s)	346, 361
Hpy188I	TCNGA	3 cut(s)	89, 231, 433
Hpy188III	TCNNGA	2 cut(s)	512, 745
Hpy8I	GTNNAC	2 cut(s)	346, 361
Hpy99I	CGWCG	4 cut(s)	67, 70, 231, 308
HpyAV	CCTTC	3 cut(s)	187, 769, 799
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	501
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 486, 620, 977
HpyF3I	CTNAG	2 cut(s)	86, 945
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	4 cut(s)	315, 537, 929, 1010
HspAI	GCGC	6 cut(s)	166, 168, 219, 722, 735, 935
Kpn2I	TCCGGA	1 cut(s)	511
KpnI	GGTACC	1 cut(s)	369
Kzo9I	GATC	3 cut(s)	529, 657, 893
Lsp1109I	GCAGC	9 cut(s)	33, 123, 126, 226, 228, 254, 501, 637, 803
LweI	GCATC	1 cut(s)	958
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	3 cut(s)	531, 659, 895
MboI	GATC	3 cut(s)	529, 657, 893
MboII	GAAGA	8 cut(s)	299, 376, 461, 565, 930, 968, 971, 977
MflI	RGATCY	2 cut(s)	529, 657
MluCI	AATT	3 cut(s)	13, 411, 997
MmeI	TCCRAC	1 cut(s)	209
MroI	TCCGGA	1 cut(s)	511
MroXI	GAANNNNTTC	1 cut(s)	980
MseI	TTAA	1 cut(s)	1039
MslI	CAYNNNNRTG	1 cut(s)	989
MspA1I	CMGCKG	3 cut(s)	239, 492, 844
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	3 cut(s)	168, 525, 617
MwoI	GCNNNNNNNGC	4 cut(s)	52, 486, 620, 977
NcoI	CCATGG	1 cut(s)	533
NdeII	GATC	3 cut(s)	529, 657, 893
NlaIII	CATG	4 cut(s)	315, 537, 929, 1010
NlaIV	GGNNCC	3 cut(s)	367, 545, 810
NsbI	TGCGCA	1 cut(s)	936
NspI	RCATGY	1 cut(s)	315
NspV	TTCGAA	2 cut(s)	447, 797
PauI	GCGCGC	1 cut(s)	166
PciI	ACATGT	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	980
PfeI	GAWTC	2 cut(s)	129, 452
PscI	ACATGT	1 cut(s)	311
PshAI	GACNNNNGTC	1 cut(s)	946
Psp1406I	AACGTT	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	3 cut(s)	367, 545, 810
PspPI	GGNCC	3 cut(s)	514, 544, 727
PstI	CTGCAG	4 cut(s)	244, 491, 655, 793
PsuI	RGATCY	2 cut(s)	529, 657
PteI	GCGCGC	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	2 cut(s)	250, 367
RsaNI	GTAC	2 cut(s)	249, 366
RseI	CAYNNNNRTG	1 cut(s)	989
SaqAI	TTAA	1 cut(s)	1039
Sau3AI	GATC	3 cut(s)	529, 657, 893
Sau96I	GGNCC	3 cut(s)	514, 544, 727
ScrFI	CCNGG	1 cut(s)	731
SfaNI	GCATC	1 cut(s)	958
SfcI	CTRYAG	4 cut(s)	240, 487, 651, 789
SfuI	TTCGAA	2 cut(s)	447, 797
SinI	GGWCC	3 cut(s)	514, 544, 727
SmiMI	CAYNNNNRTG	1 cut(s)	989
Sse9I	AATT	3 cut(s)	13, 411, 997
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	1 cut(s)	533
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	5 cut(s)	127, 132, 447, 797, 896
TasI	AATT	3 cut(s)	13, 411, 997
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	5 cut(s)	74, 173, 176, 617, 650
TfiI	GAWTC	2 cut(s)	129, 452
Tru1I	TTAA	1 cut(s)	1039
Tru9I	TTAA	1 cut(s)	1039
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	9 cut(s)	46, 111, 114, 216, 239, 242, 489, 650, 791
TspDTI	ATGAA	4 cut(s)	17, 26, 444, 978
TspGWI	ACGGA	3 cut(s)	423, 708, 780
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	3 cut(s)	514, 544, 727
XceI	RCATGY	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.