Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011294

Physical Location & Seq

Genomic Coordinates Reverse (-)

17955850 .. 17958813

Gene Structure 2964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAATTTTCCCACTATTGCAATTTGAGCAAAAGAGAGATTGATTCTGTAGTTTATGGTGTCATTGTGTTGGATATTTGGGTTGTCCGGTCCAGTATTTCTCTAGTTTACTTAGGTCGTCGAAGGTTAGTAGGCAGAAGAGTTAGTTGTAGCTTACTAAAAGTGGAAGAGGACATAAATGACGAGGCATGTGAATTAGTCAGTGGAATTGAACTTTCAGTTGGCGAGGGTGAAGATAGCATCAATGCTCATCTCTTCAAGGCAGTGAAAAATAATAATGGAACCGGGATATTGCTCTTGTCTGATATCTTTGGATTTGAAGATTCATCCACAAGAGAGTTTGCATATCGTGTTGCTTGCAATGGTTATAATGTCTTACTTCCGGACCTATTTCGTGGGGATCCATGGACAAAGGACAGACCAAAGATTTTGCTTGATGAATGGATTGTGAAACAAGAACCTCAGAGGGTTGCAAAAGACATCGCCACATCGGCAAAATGGATGGTGGACGAATTTTTGGCTGCAGGAATCTCAAAGAAGCTATGTTTGGTTGGTTTTTGCTTTGGAGGTGGCAAAGTGATTGATGTGCTAGCCAGAGACCAGGGTGCTTATTTTGGTATTGGGGTCTCCTTTTATGGAACAAGGATGGACCTGAGCATAGCTTCTGATATTAAGGTCCCTGTATTGTTTATCTCAGGGGACAATGACCCACTTTGTCCTGTCAATGTCCTGGAGAACATTGAGAAAAGCATTGGTAAGGGGTCTAGGTTGGTGACTTTCAAGGGAAGAGGTCATGGCTTTGCTCACCGACCTCACTCTGCTGAAGAAGATGAAGATGCAGAGAAAGCTTTCACGATTATGAGAAATTGGCTCAATGATGGCTTGGTTGCACTAACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

300

Amino Acids

33.29

Weight (kDa)

5.31

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DLH	PF01738	87 - 292	1.1e-28	Dienelactone hydrolase family
Abhydrolase_4	PF08386	225 - 272	4.7e-06	TAP-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35420 AT1G35420 AT1G35420
fragaria_vesca	FvH4_5g31620 FvH4_5g31620
malus_domestica	MD08G1217800.v1.1
prunus_persica	Prupe.1G555600_v2.0.a1
pyrus_communis	pycom08g18880
rosa_chinensis	RchiOBHm_Chr7g0227151
rosa_laevigata	RLG00000001664
rosa_multiflora	Rmu_co8431879.1_g000001 Rmu_sc0003153.1_g000019
rosa_roxburghii	Rroxscaffold_3G00232270
rosa_rugosa	Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh7AG390900 Rh7BG375900 Rh7CG409900 Rh7DG388200
rosa_wichuraiana	Rw7G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccIII	TCCGGA	1 cut(s)	382
AclWI	GGATC	2 cut(s)	395, 408
AcsI	RAATTY	2 cut(s)	5, 512
AcuI	CTGAAG	1 cut(s)	843
AgsI	TTSAA	4 cut(s)	212, 259, 320, 781
AjnI	CCWGG	2 cut(s)	600, 729
AjuI	GAANNNNNNNTTGG	4 cut(s)	204, 236, 530, 562
AluBI	AGCT	4 cut(s)	153, 541, 662, 848
AluI	AGCT	4 cut(s)	153, 541, 662, 848
Alw26I	GTCTC	2 cut(s)	591, 631
AlwI	GGATC	2 cut(s)	395, 408
Aor13HI	TCCGGA	1 cut(s)	382
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	2 cut(s)	5, 512
Asp700I	GAANNNNTTC	1 cut(s)	848
AspS9I	GGNCC	4 cut(s)	90, 385, 649, 676
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	3 cut(s)	242, 784, 797
AsuNHI	GCTAGC	1 cut(s)	589
AvaII	GGWCC	4 cut(s)	90, 385, 649, 676
BamHI	GGATCC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	3 cut(s)	496, 640, 872
BciT130I	CCWGG	2 cut(s)	602, 731
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	591, 631
BfaI	CTAG	3 cut(s)	104, 590, 765
BfmI	CTRYAG	2 cut(s)	48, 522
BglI	GCCNNNNNGGC	1 cut(s)	491
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	3 cut(s)	286, 602, 731
Bme18I	GGWCC	4 cut(s)	90, 385, 649, 676
BmgT120I	GGNCC	4 cut(s)	90, 385, 649, 676
BmiI	GGNNCC	3 cut(s)	283, 402, 678
BmrFI	CCNGG	3 cut(s)	286, 602, 731
BmsI	GCATC	2 cut(s)	249, 826
BmtI	GCTAGC	1 cut(s)	593
BpmI	CTGGAG	1 cut(s)	752
Bpu10I	CCTNAGC	1 cut(s)	653
BpuMI	CCSGG	1 cut(s)	286
BsaI	GGTCTC	2 cut(s)	591, 631
BsaJI	CCNNGG	2 cut(s)	404, 601
BsaWI	WCCGGW	2 cut(s)	87, 382
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	367
BseAI	TCCGGA	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	602, 731
BseDI	CCNNGG	2 cut(s)	404, 601
BseGI	GGATG	3 cut(s)	326, 507, 651
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	3 cut(s)	476, 644, 708
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	508
BsiSI	CCGG	3 cut(s)	88, 285, 383
BslFI	GGGAC	2 cut(s)	662, 713
BsmAI	GTCTC	2 cut(s)	591, 631
BsmFI	GGGAC	2 cut(s)	662, 713
Bso31I	GGTCTC	2 cut(s)	591, 631
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	1 cut(s)	400
Bsp19I	CCATGG	1 cut(s)	404
BspCNI	CTCAG	3 cut(s)	475, 645, 707
BspEI	TCCGGA	1 cut(s)	382
BspLI	GGNNCC	3 cut(s)	283, 402, 678
BspMAI	CTGCAG	1 cut(s)	526
BspOI	GCTAGC	1 cut(s)	593
BspPI	GGATC	2 cut(s)	395, 408
BspTNI	GGTCTC	2 cut(s)	591, 631
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	404, 601
BssMI	GATC	1 cut(s)	400
BssT1I	CCWWGG	1 cut(s)	404
Bst2UI	CCWGG	2 cut(s)	602, 731
Bst6I	CTCTTC	4 cut(s)	133, 162, 260, 781
BstC8I	GCNNGC	2 cut(s)	358, 591
BstDEI	CTNAG	4 cut(s)	112, 462, 653, 694
BstDSI	CCRYGG	1 cut(s)	404
BstF5I	GGATG	3 cut(s)	326, 507, 651
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	2 cut(s)	591, 631
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 491, 845
BstNI	CCWGG	2 cut(s)	602, 731
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	3 cut(s)	284, 600, 729
BstSFI	CTRYAG	2 cut(s)	48, 522
BstV1I	GCAGC	1 cut(s)	508
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	404
BtgZI	GCGATG	1 cut(s)	466
BtsCI	GGATG	3 cut(s)	326, 507, 651
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	208, 270
Cac8I	GCNNGC	2 cut(s)	358, 591
Cfr13I	GGNCC	4 cut(s)	90, 385, 649, 676
CviAII	CATG	3 cut(s)	189, 405, 794
CviJI	RGCY	9 cut(s)	153, 521, 541, 593, 662, 798, 848, 871, 882
CviKI_1	RGCY	9 cut(s)	153, 521, 541, 593, 662, 798, 848, 871, 882
DdeI	CTNAG	4 cut(s)	112, 462, 653, 694
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Eam1104I	CTCTTC	4 cut(s)	133, 162, 260, 781
EarI	CTCTTC	4 cut(s)	133, 162, 260, 781
Eco130I	CCWWGG	1 cut(s)	404
Eco31I	GGTCTC	2 cut(s)	591, 631
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	4 cut(s)	90, 385, 649, 676
Eco57I	CTGAAG	1 cut(s)	843
EcoO109I	RGGNCCY	1 cut(s)	676
EcoRII	CCWGG	2 cut(s)	600, 729
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	3 cut(s)	192, 408, 797
FaqI	GGGAC	2 cut(s)	662, 713
FatI	CATG	3 cut(s)	188, 404, 793
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	3 cut(s)	313, 514, 658
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	3 cut(s)	104, 590, 765
GluI	GCNGC	1 cut(s)	522
GsuI	CTGGAG	1 cut(s)	752
HapII	CCGG	3 cut(s)	88, 285, 383
Hin1II	CATG	3 cut(s)	192, 408, 797
HindIII	AAGCTT	1 cut(s)	846
HinfI	GANTC	3 cut(s)	44, 323, 528
HpaII	CCGG	3 cut(s)	88, 285, 383
HphI	GGTGA	3 cut(s)	242, 784, 797
Hpy166II	GTNNAC	2 cut(s)	109, 508
Hpy188I	TCNGA	3 cut(s)	304, 465, 667
Hpy188III	TCNNGA	2 cut(s)	383, 853
Hpy8I	GTNNAC	2 cut(s)	109, 508
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	117
HpyCH4V	TGCA	7 cut(s)	21, 344, 360, 473, 524, 839, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 491, 845
HpyF3I	CTNAG	4 cut(s)	112, 462, 653, 694
Hsp92II	CATG	3 cut(s)	192, 408, 797
Kpn2I	TCCGGA	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	400
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	2 cut(s)	249, 826
MaeI	CTAG	3 cut(s)	104, 590, 765
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	9 cut(s)	150, 179, 245, 247, 332, 798, 836, 839, 845
MflI	RGATCY	1 cut(s)	400
MluCI	AATT	6 cut(s)	5, 22, 194, 207, 512, 865
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	8 cut(s)	163, 178, 220, 459, 471, 560, 782, 822
MroI	TCCGGA	1 cut(s)	382
MroXI	GAANNNNTTC	1 cut(s)	848
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	1 cut(s)	857
MspI	CCGG	3 cut(s)	88, 285, 383
MspR9I	CCNGG	3 cut(s)	286, 602, 731
MvaI	CCWGG	2 cut(s)	602, 731
MwoI	GCNNNNNNNGC	3 cut(s)	27, 491, 845
NciI	CCSGG	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	404
NdeII	GATC	1 cut(s)	400
NheI	GCTAGC	1 cut(s)	589
NlaIII	CATG	3 cut(s)	192, 408, 797
NlaIV	GGNNCC	3 cut(s)	283, 402, 678
NmuCI	GTSAC	1 cut(s)	772
NspI	RCATGY	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	848
PfeI	GAWTC	3 cut(s)	44, 323, 528
PfoI	TCCNGGA	1 cut(s)	729
PkrI	GCNGC	1 cut(s)	523
PpuMI	RGGWCCY	1 cut(s)	676
PsiI	TTATAA	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	676
Psp6I	CCWGG	2 cut(s)	600, 729
PspGI	CCWGG	2 cut(s)	600, 729
PspN4I	GGNNCC	3 cut(s)	283, 402, 678
PspPI	GGNCC	4 cut(s)	90, 385, 649, 676
PspPPI	RGGWCCY	1 cut(s)	676
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	857
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	4 cut(s)	90, 385, 649, 676
ScrFI	CCNGG	3 cut(s)	286, 602, 731
SfaNI	GCATC	2 cut(s)	249, 826
SfcI	CTRYAG	2 cut(s)	48, 522
SinI	GGWCC	4 cut(s)	90, 385, 649, 676
SmiMI	CAYNNNNRTG	1 cut(s)	857
Sse9I	AATT	6 cut(s)	5, 22, 194, 207, 512, 865
SspMI	CTAG	3 cut(s)	104, 590, 765
StyD4I	CCNGG	3 cut(s)	284, 600, 729
StyI	CCWWGG	1 cut(s)	404
TaqI	TCGA	1 cut(s)	121
TasI	AATT	6 cut(s)	5, 22, 194, 207, 512, 865
TfiI	GAWTC	3 cut(s)	44, 323, 528
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	2 cut(s)	208, 270
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	3 cut(s)	315, 453, 846
TspRI	CASTG	2 cut(s)	208, 270
VpaK11BI	GGWCC	4 cut(s)	90, 385, 649, 676
XapI	RAATTY	2 cut(s)	5, 512
XceI	RCATGY	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	848
XspI	CTAG	3 cut(s)	104, 590, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.