Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011294

Physical Location & Seq

Genomic Coordinates Forward (+)

52615346 .. 52619257

Gene Structure 3912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG409900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGGGTTATACTCACTCTCAACTTCTGCTTCCTTAATCTTCTGCAACTTGTCTCCCAATCCCAGAAACCCAACTCTTCATCATTTTGGGTTCCTCTCAACTACTTTTGCTTCTCCTCTGCGCACCTCTTCAAGAGCATGCGATATAGGTCGTCGAAAGTTAGTAGGCAGAAGAGTTAGTTGTAGCTTACTAAAAGTGGAAGAGGACATAAATGACGAGGCATGTGAATTAGTCAGTGGAATTGAACTTTCAGTTGGCGAGGGTGAAGATAGCATCAATGCTCATCTCTTCAAGGCAGTGAAAAATAATAATGGAACCGGGATATTGCTCTTGTCTGATATCTTTGGATTTGAAGATTCATCCACAAGAGAGTTTGCATATCGTGTTGCTTGCAATGGTTATAATGTCTTACTTCCAGACCTATTTCGTGAAGATCCATGGACAAAGGACAGACCAAAGATTTTGTTTGATGAATGGATTGTGAAACAAGAACCTCAGAGGGTTGCAAAAGACATCGCCACATCGGCAAAATGGATGGTGGACGAATTTTTGGCTGCAGGAATCTCAAAGAAGCTTGGTTTGGTTGGTTTTTGCTTTGGAGGTGGCAAAGTGATTGATGTGCTAGCCAGAGACCAGGGTGCTTATTTTGGTATTGGGGTCTCCTTTTATGGAACAAGGATGGACCTGAGCGTAGCTTCTGATATTAAGGTCCCCGTATTGTTTATCTCAGGGGACAATGACCCACTTTGTCCTGTCAATGTCCTGGAGAACATTGAGAAAAGCATTGGTGGGGGGTCTAGGTTGGTGACTTTCAAGGGAAGAGGTCATGGCTTTGCTCACCGACCTCAGTCTGCTGAAGAAGATGAAGATGCAGAGAAAGCTTTCACGATTATGAGAAATTGGCTCAATGATGGCTTGGTTGCACCAACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

311

Amino Acids

34.11

Weight (kDa)

5.4

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DLH	PF01738	98 - 303	1.6e-28	Dienelactone hydrolase family
Abhydrolase_4	PF08386	236 - 284	3.6e-06	TAP-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35420 AT1G35420 AT1G35420
fragaria_vesca	FvH4_5g31620 FvH4_5g31620
malus_domestica	MD08G1217800.v1.1
prunus_persica	Prupe.1G555600_v2.0.a1
pyrus_communis	pycom08g18880
rosa_chinensis	RchiOBHm_Chr7g0227151
rosa_laevigata	RLG00000001664
rosa_multiflora	Rmu_co8431879.1_g000001 Rmu_sc0003153.1_g000019
rosa_roxburghii	Rroxscaffold_3G00232270
rosa_rugosa	Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh7AG390900 Rh7BG375900 Rh7CG409900 Rh7DG388200
rosa_wichuraiana	Rw7G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
Acc16I	TGCGCA	1 cut(s)	122
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	1 cut(s)	545
AcuI	CTGAAG	1 cut(s)	876
AgsI	TTSAA	5 cut(s)	132, 245, 292, 353, 814
AjnI	CCWGG	2 cut(s)	633, 762
AjuI	GAANNNNNNNTTGG	4 cut(s)	237, 269, 563, 595
AluBI	AGCT	4 cut(s)	186, 574, 695, 881
AluI	AGCT	4 cut(s)	186, 574, 695, 881
Alw26I	GTCTC	3 cut(s)	57, 624, 664
AlwI	GGATC	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	545
Asp700I	GAANNNNTTC	1 cut(s)	881
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	682, 709
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	3 cut(s)	275, 817, 830
AsuNHI	GCTAGC	1 cut(s)	622
AvaII	GGWCC	2 cut(s)	682, 709
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	3 cut(s)	529, 673, 905
BciT130I	CCWGG	2 cut(s)	635, 764
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	3 cut(s)	57, 624, 664
BfaI	CTAG	2 cut(s)	623, 798
BfmI	CTRYAG	1 cut(s)	555
BglI	GCCNNNNNGGC	1 cut(s)	524
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	3 cut(s)	319, 635, 764
Bme18I	GGWCC	2 cut(s)	682, 709
BmgT120I	GGNCC	2 cut(s)	682, 709
BmiI	GGNNCC	3 cut(s)	92, 316, 711
BmrFI	CCNGG	3 cut(s)	319, 635, 764
BmsI	GCATC	2 cut(s)	282, 859
BmtI	GCTAGC	1 cut(s)	626
BoxI	GACNNNNGTC	1 cut(s)	847
BpmI	CTGGAG	1 cut(s)	785
Bpu10I	CCTNAGC	1 cut(s)	686
BpuMI	CCSGG	1 cut(s)	319
BsaI	GGTCTC	2 cut(s)	624, 664
BsaJI	CCNNGG	2 cut(s)	437, 634
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	635, 764
BseDI	CCNNGG	2 cut(s)	437, 634
BseGI	GGATG	3 cut(s)	359, 540, 684
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	4 cut(s)	509, 677, 741, 860
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	695, 746
BsmAI	GTCTC	3 cut(s)	57, 624, 664
BsmFI	GGGAC	2 cut(s)	695, 746
Bso31I	GGTCTC	2 cut(s)	624, 664
Bsp143I	GATC	1 cut(s)	433
Bsp19I	CCATGG	1 cut(s)	437
BspCNI	CTCAG	4 cut(s)	508, 678, 740, 859
BspLI	GGNNCC	3 cut(s)	92, 316, 711
BspMAI	CTGCAG	1 cut(s)	559
BspOI	GCTAGC	1 cut(s)	626
BspPI	GGATC	1 cut(s)	428
BspTNI	GGTCTC	2 cut(s)	624, 664
BsrDI	GCAATG	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	437, 634
BssMI	GATC	1 cut(s)	433
BssT1I	CCWWGG	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	635, 764
Bst6I	CTCTTC	6 cut(s)	81, 133, 166, 195, 293, 814
BstC8I	GCNNGC	3 cut(s)	139, 391, 624
BstDEI	CTNAG	4 cut(s)	495, 686, 727, 846
BstDSI	CCRYGG	1 cut(s)	437
BstF5I	GGATG	3 cut(s)	359, 540, 684
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	3 cut(s)	57, 624, 664
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 878
BstNI	CCWGG	2 cut(s)	635, 764
BstNSI	RCATGY	2 cut(s)	141, 225
BstPAI	GACNNNNGTC	1 cut(s)	847
BstSCI	CCNGG	3 cut(s)	317, 633, 762
BstSFI	CTRYAG	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BtgI	CCRYGG	1 cut(s)	437
BtgZI	GCGATG	1 cut(s)	499
BtsCI	GGATG	3 cut(s)	359, 540, 684
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	241, 303
Cac8I	GCNNGC	3 cut(s)	139, 391, 624
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	682, 709
CviAII	CATG	4 cut(s)	138, 222, 438, 827
CviJI	RGCY	9 cut(s)	186, 554, 574, 626, 695, 831, 881, 904, 915
CviKI_1	RGCY	9 cut(s)	186, 554, 574, 626, 695, 831, 881, 904, 915
DdeI	CTNAG	4 cut(s)	495, 686, 727, 846
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
Eam1104I	CTCTTC	6 cut(s)	81, 133, 166, 195, 293, 814
EarI	CTCTTC	6 cut(s)	81, 133, 166, 195, 293, 814
Eco130I	CCWWGG	1 cut(s)	437
Eco31I	GGTCTC	2 cut(s)	624, 664
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	682, 709
Eco57I	CTGAAG	1 cut(s)	876
EcoO109I	RGGNCCY	1 cut(s)	709
EcoRII	CCWGG	2 cut(s)	633, 762
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	4 cut(s)	141, 225, 441, 830
FaqI	GGGAC	2 cut(s)	695, 746
FatI	CATG	4 cut(s)	137, 221, 437, 826
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	3 cut(s)	346, 547, 691
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	2 cut(s)	623, 798
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	785
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	141, 225, 441, 830
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	2 cut(s)	572, 879
HinfI	GANTC	2 cut(s)	356, 561
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	3 cut(s)	275, 817, 830
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	3 cut(s)	337, 498, 700
Hpy188III	TCNNGA	4 cut(s)	132, 416, 428, 886
Hpy8I	GTNNAC	1 cut(s)	541
Hpy99I	CGWCG	1 cut(s)	156
HpyCH4V	TGCA	7 cut(s)	45, 377, 393, 506, 557, 872, 923
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 878
HpyF3I	CTNAG	4 cut(s)	495, 686, 727, 846
Hsp92II	CATG	4 cut(s)	141, 225, 441, 830
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	433
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	2 cut(s)	282, 859
MaeI	CTAG	2 cut(s)	623, 798
MaeIII	GTNAC	1 cut(s)	805
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	4 cut(s)	227, 240, 545, 898
MroXI	GAANNNNTTC	1 cut(s)	881
MseI	TTAA	2 cut(s)	35, 705
MslI	CAYNNNNRTG	1 cut(s)	890
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	3 cut(s)	319, 635, 764
MvaI	CCWGG	2 cut(s)	635, 764
MwoI	GCNNNNNNNGC	2 cut(s)	524, 878
NciI	CCSGG	1 cut(s)	319
NcoI	CCATGG	1 cut(s)	437
NdeII	GATC	1 cut(s)	433
NheI	GCTAGC	1 cut(s)	622
NlaIII	CATG	4 cut(s)	141, 225, 441, 830
NlaIV	GGNNCC	3 cut(s)	92, 316, 711
NmuCI	GTSAC	1 cut(s)	805
NsbI	TGCGCA	1 cut(s)	122
NspI	RCATGY	2 cut(s)	141, 225
PaeI	GCATGC	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	881
PfeI	GAWTC	2 cut(s)	356, 561
PfoI	TCCNGGA	1 cut(s)	762
PkrI	GCNGC	1 cut(s)	556
PpuMI	RGGWCCY	1 cut(s)	709
PshAI	GACNNNNGTC	1 cut(s)	847
PsiI	TTATAA	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	709
Psp6I	CCWGG	2 cut(s)	633, 762
PspGI	CCWGG	2 cut(s)	633, 762
PspN4I	GGNNCC	3 cut(s)	92, 316, 711
PspPI	GGNCC	2 cut(s)	682, 709
PspPPI	RGGWCCY	1 cut(s)	709
PstI	CTGCAG	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	890
SaqAI	TTAA	2 cut(s)	35, 705
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	2 cut(s)	682, 709
ScrFI	CCNGG	3 cut(s)	319, 635, 764
SfaNI	GCATC	2 cut(s)	282, 859
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	2 cut(s)	682, 709
SmiMI	CAYNNNNRTG	1 cut(s)	890
SphI	GCATGC	1 cut(s)	141
Sse9I	AATT	4 cut(s)	227, 240, 545, 898
SspMI	CTAG	2 cut(s)	623, 798
StyD4I	CCNGG	3 cut(s)	317, 633, 762
StyI	CCWWGG	1 cut(s)	437
TaqI	TCGA	1 cut(s)	154
TasI	AATT	4 cut(s)	227, 240, 545, 898
TfiI	GAWTC	2 cut(s)	356, 561
Tru1I	TTAA	2 cut(s)	35, 705
Tru9I	TTAA	2 cut(s)	35, 705
TscAI	CASTG	2 cut(s)	241, 303
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	4 cut(s)	68, 348, 486, 879
TspRI	CASTG	2 cut(s)	241, 303
VpaK11BI	GGWCC	2 cut(s)	682, 709
XapI	RAATTY	1 cut(s)	545
XceI	RCATGY	2 cut(s)	141, 225
XmnI	GAANNNNTTC	1 cut(s)	881
XspI	CTAG	2 cut(s)	623, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.