Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011294

Physical Location & Seq

Genomic Coordinates Forward (+)

53135662 .. 53139637

Gene Structure 3976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG388200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGGTTATACTCACTTTCAACTTCTGCTTCCTCAAGCATCAGCAACTTGTCTCTCAATCCCAGAAACCCAGCTCTGCATCATTTTGGGTTCCTCTCAACTACTTTTGCTTCTCCTCTGCGCACCTCTTCAAGCTCAGTTTATGTCCAGAGAGCATGCGATATAGGTCGTCGAAAGTTAGTAGGCAGAAGAGTTAGTTGTAGCTTACTAAAAGTGGAAGAGGACATAAATGACGAGGCATGTGAATTAGTCAGTGGAATTGAACTTTCAGTTGGCGAGGGTGAAGATAGCATCAATGCTCATCTCTTCAAGGCAGTGAAAAATAATAATGGAACCGGGATATTGCTCTTGTCTGATATCTTTGGATTTGAAGATTCATCCACAAGAGAGTTTGCATATCGTGTTGCTTGCAATGGGTATAATGTCTTACTTCCAGACCTATTTCGTGAAGATCCATGGACAAAGGACAGACCAAAGATTTTGTTTGATGAATGGATTGTGAAACAAGAACCTCAGAGGGTTGCAAAAGACATTGCCAAATCGGCAAAATGGATGGTTGACGAATTTTTGGCTGCAGGAATCTCAAAGAAGCTTGGTTTGGTTGGTTTTTGCTTTGGAGGTGGCAAAGTGATTGATGTGCTAGCCAGAGACCAGGGTGCTTATTTTGGTATTGGGGTCTCCTTTTATGGAACAAGGATGGACCTGAGCGTAGCTTCTGATATTAAGGTCCCTGTATTGTTTATCTCAGGGGACAATGACCCACTTTGTCCTGTCAATGTCCTGGAGAACATTGAGAAAAGCATTGGTAGGGGGTCTAGGTTGGTGACTTTCAAGGGAAGAGGTCATGGCTTTGCTCACCGACCTCAGTCTACTGAAGAAGATGAAGATGCAGAGAAAGCTTTCACGATTATGAGAAATTGGCTCAATGATGGCTTGGTTGCACCAACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

317

Amino Acids

34.81

Weight (kDa)

5.68

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DLH	PF01738	104 - 309	7.6e-29	Dienelactone hydrolase family
Abhydrolase_4	PF08386	242 - 288	8.3e-06	TAP-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35420 AT1G35420 AT1G35420
fragaria_vesca	FvH4_5g31620 FvH4_5g31620
malus_domestica	MD08G1217800.v1.1
prunus_persica	Prupe.1G555600_v2.0.a1
pyrus_communis	pycom08g18880
rosa_chinensis	RchiOBHm_Chr7g0227151
rosa_laevigata	RLG00000001664
rosa_multiflora	Rmu_co8431879.1_g000001 Rmu_sc0003153.1_g000019
rosa_roxburghii	Rroxscaffold_3G00232270
rosa_rugosa	Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh7AG390900 Rh7BG375900 Rh7CG409900 Rh7DG388200
rosa_wichuraiana	Rw7G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	869
AclWI	GGATC	1 cut(s)	446
AcsI	RAATTY	1 cut(s)	563
AcuI	CTGAAG	1 cut(s)	894
AgsI	TTSAA	6 cut(s)	21, 132, 263, 310, 371, 832
AjnI	CCWGG	2 cut(s)	651, 780
AjuI	GAANNNNNNNTTGG	4 cut(s)	255, 287, 581, 613
AluBI	AGCT	6 cut(s)	74, 135, 204, 592, 713, 899
AluI	AGCT	6 cut(s)	74, 135, 204, 592, 713, 899
Alw26I	GTCTC	3 cut(s)	57, 642, 682
AlwI	GGATC	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	1 cut(s)	563
Asp700I	GAANNNNTTC	1 cut(s)	899
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	700, 727
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	3 cut(s)	293, 835, 848
AsuNHI	GCTAGC	1 cut(s)	640
AvaII	GGWCC	2 cut(s)	700, 727
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	3 cut(s)	547, 691, 923
BciT130I	CCWGG	2 cut(s)	653, 782
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	3 cut(s)	57, 642, 682
BfaI	CTAG	2 cut(s)	641, 816
BfmI	CTRYAG	1 cut(s)	573
BglI	GCCNNNNNGGC	1 cut(s)	542
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	3 cut(s)	337, 653, 782
Bme18I	GGWCC	2 cut(s)	700, 727
BmgT120I	GGNCC	2 cut(s)	700, 727
BmiI	GGNNCC	3 cut(s)	92, 334, 729
BmrFI	CCNGG	3 cut(s)	337, 653, 782
BmsI	GCATC	4 cut(s)	48, 88, 300, 877
BmtI	GCTAGC	1 cut(s)	644
BoxI	GACNNNNGTC	1 cut(s)	865
BpmI	CTGGAG	1 cut(s)	803
Bpu10I	CCTNAGC	1 cut(s)	704
BpuEI	CTTGAG	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	337
BsaI	GGTCTC	2 cut(s)	642, 682
BsaJI	CCNNGG	2 cut(s)	455, 652
Bse3DI	GCAATG	2 cut(s)	418, 531
BseBI	CCWGG	2 cut(s)	653, 782
BseDI	CCNNGG	2 cut(s)	455, 652
BseGI	GGATG	3 cut(s)	377, 558, 702
BseMI	GCAATG	2 cut(s)	418, 531
BseMII	CTCAG	5 cut(s)	150, 527, 695, 759, 878
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	559
BseYI	CCCAGC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	2 cut(s)	713, 764
BsmAI	GTCTC	3 cut(s)	57, 642, 682
BsmFI	GGGAC	2 cut(s)	713, 764
Bso31I	GGTCTC	2 cut(s)	642, 682
Bsp143I	GATC	1 cut(s)	451
Bsp19I	CCATGG	1 cut(s)	455
BspCNI	CTCAG	5 cut(s)	149, 526, 696, 758, 877
BspLI	GGNNCC	3 cut(s)	92, 334, 729
BspMAI	CTGCAG	1 cut(s)	577
BspOI	GCTAGC	1 cut(s)	644
BspPI	GGATC	1 cut(s)	446
BspTNI	GGTCTC	2 cut(s)	642, 682
BsrDI	GCAATG	2 cut(s)	418, 531
BssECI	CCNNGG	2 cut(s)	455, 652
BssMI	GATC	1 cut(s)	451
BssT1I	CCWWGG	1 cut(s)	455
Bst2UI	CCWGG	2 cut(s)	653, 782
Bst6I	CTCTTC	5 cut(s)	133, 184, 213, 311, 832
BstC8I	GCNNGC	3 cut(s)	157, 409, 642
BstDEI	CTNAG	5 cut(s)	136, 513, 704, 745, 864
BstDSI	CCRYGG	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	377, 558, 702
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	3 cut(s)	57, 642, 682
BstMBI	GATC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 896
BstNI	CCWGG	2 cut(s)	653, 782
BstNSI	RCATGY	2 cut(s)	159, 243
BstPAI	GACNNNNGTC	1 cut(s)	865
BstSCI	CCNGG	3 cut(s)	335, 651, 780
BstSFI	CTRYAG	1 cut(s)	573
BstV1I	GCAGC	1 cut(s)	559
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BtgI	CCRYGG	1 cut(s)	455
BtsCI	GGATG	3 cut(s)	377, 558, 702
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	259, 321
Cac8I	GCNNGC	3 cut(s)	157, 409, 642
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	700, 727
CviAII	CATG	4 cut(s)	156, 240, 456, 845
DdeI	CTNAG	5 cut(s)	136, 513, 704, 745, 864
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
Eam1104I	CTCTTC	5 cut(s)	133, 184, 213, 311, 832
EarI	CTCTTC	5 cut(s)	133, 184, 213, 311, 832
Eco130I	CCWWGG	1 cut(s)	455
Eco31I	GGTCTC	2 cut(s)	642, 682
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	700, 727
Eco57I	CTGAAG	1 cut(s)	894
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRII	CCWGG	2 cut(s)	651, 780
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	4 cut(s)	159, 243, 459, 848
FaqI	GGGAC	2 cut(s)	713, 764
FatI	CATG	4 cut(s)	155, 239, 455, 844
FblI	GTMKAC	1 cut(s)	869
Fnu4HI	GCNGC	1 cut(s)	573
FokI	GGATG	3 cut(s)	364, 565, 709
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	2 cut(s)	641, 816
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	573
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	803
HapII	CCGG	1 cut(s)	336
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	159, 243, 459, 848
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	2 cut(s)	590, 897
HinfI	GANTC	2 cut(s)	374, 579
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	3 cut(s)	293, 835, 848
Hpy166II	GTNNAC	2 cut(s)	559, 870
Hpy188I	TCNGA	3 cut(s)	355, 516, 718
Hpy188III	TCNNGA	4 cut(s)	148, 434, 446, 904
Hpy8I	GTNNAC	2 cut(s)	559, 870
Hpy99I	CGWCG	1 cut(s)	174
HpyCH4V	TGCA	7 cut(s)	79, 395, 411, 524, 575, 890, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 896
HpyF3I	CTNAG	5 cut(s)	136, 513, 704, 745, 864
Hsp92II	CATG	4 cut(s)	159, 243, 459, 848
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	451
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	4 cut(s)	48, 88, 300, 877
MaeI	CTAG	2 cut(s)	641, 816
MaeIII	GTNAC	1 cut(s)	823
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MflI	RGATCY	1 cut(s)	451
MluCI	AATT	4 cut(s)	245, 258, 563, 916
MroXI	GAANNNNTTC	1 cut(s)	899
MseI	TTAA	1 cut(s)	723
MslI	CAYNNNNRTG	1 cut(s)	908
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	3 cut(s)	337, 653, 782
MvaI	CCWGG	2 cut(s)	653, 782
MwoI	GCNNNNNNNGC	2 cut(s)	542, 896
NciI	CCSGG	1 cut(s)	337
NcoI	CCATGG	1 cut(s)	455
NdeII	GATC	1 cut(s)	451
NheI	GCTAGC	1 cut(s)	640
NlaIII	CATG	4 cut(s)	159, 243, 459, 848
NlaIV	GGNNCC	3 cut(s)	92, 334, 729
NmuCI	GTSAC	1 cut(s)	823
NsbI	TGCGCA	1 cut(s)	122
NspI	RCATGY	2 cut(s)	159, 243
PaeI	GCATGC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	899
PfeI	GAWTC	2 cut(s)	374, 579
PfoI	TCCNGGA	1 cut(s)	780
PkrI	GCNGC	1 cut(s)	574
PpuMI	RGGWCCY	1 cut(s)	727
PshAI	GACNNNNGTC	1 cut(s)	865
Psp5II	RGGWCCY	1 cut(s)	727
Psp6I	CCWGG	2 cut(s)	651, 780
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	2 cut(s)	651, 780
PspN4I	GGNNCC	3 cut(s)	92, 334, 729
PspPI	GGNCC	2 cut(s)	700, 727
PspPPI	RGGWCCY	1 cut(s)	727
PstI	CTGCAG	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	908
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	2 cut(s)	700, 727
ScrFI	CCNGG	3 cut(s)	337, 653, 782
SfaNI	GCATC	4 cut(s)	48, 88, 300, 877
SfcI	CTRYAG	1 cut(s)	573
SinI	GGWCC	2 cut(s)	700, 727
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	4 cut(s)	245, 258, 563, 916
SspMI	CTAG	2 cut(s)	641, 816
StyD4I	CCNGG	3 cut(s)	335, 651, 780
StyI	CCWWGG	1 cut(s)	455
TaqI	TCGA	1 cut(s)	172
TasI	AATT	4 cut(s)	245, 258, 563, 916
TfiI	GAWTC	2 cut(s)	374, 579
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	2 cut(s)	259, 321
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	3 cut(s)	366, 504, 897
TspRI	CASTG	2 cut(s)	259, 321
VpaK11BI	GGWCC	2 cut(s)	700, 727
XapI	RAATTY	1 cut(s)	563
XceI	RCATGY	2 cut(s)	159, 243
XmiI	GTMKAC	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	899
XspI	CTAG	2 cut(s)	641, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.