FvH4_5g35450

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009692
Physical Location & Seq
Forward (+)
25961221 .. 25964132
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35450.t1

Sequence Viewer

Length: 528 bp
ATGGAAGATGGATATGATGTCACTGATAATCATTTAGGAAAGAATGTCAAGGTGGCAGAACTAATATGGGTGGAGACCAATGGAGGCTCATGGTGGCCTGCACAGGTTGTTAGTGAAGACGCTGTGAGTGGGAACAACAAGCCCCTTAAAACATCATCTGGGGAAGTTCCTGTTCGGCTCTATGGAAGCTACAAATTCTTGTATGTGGACGGTCAAAAATGTTGTTCTGATTTTGAAATAATTCTTGAGCAGAATAATGGTTCCCATAGAGATATATTTCTCAAAGCTCTGGAGCAGGCAAGGATAAGGAGCTTTCCGAGATTACAGAAGCATGGAAAGAAGGTTGAGGATAAAGCAAATGGTAAACCCATAAAGCAAGATGGGTTGCTGAAGAAGGCCAAAGAAAATAGATCAAGTGTCCAGGCAGAAGTGTTAACAGAGGCAGGTGCGCGAAGATTAAGAGTGATGCGAAATCTTGGCCTCATTGCCCCTTCAGGGTCTCCTTACCACAAAAATGGACGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA PAS_3 PWWP

Protein Analysis

176

Amino Acids

19.52

Weight (kDa)

9.41

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 20 - 101 2.6e-10 PWWP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 434
Acc36I ACCTGC 1 cut(s) 434
AccII CGCG 1 cut(s) 451
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 2 cut(s) 410, 477
AfiI CCNNNNNNNGG 1 cut(s) 495
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 1 cut(s) 236
AjiI CACGTC 1 cut(s) 521
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 3 cut(s) 189, 287, 312
AluI AGCT 3 cut(s) 189, 287, 312
Alw26I GTCTC 2 cut(s) 68, 504
AoxI GGCC 3 cut(s) 95, 396, 478
ApoI RAATTY 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 123
BccI CCATC 2 cut(s) 2, 374
BciT130I CCWGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 68, 504
BfuAI ACCTGC 1 cut(s) 434
Bme1390I CCNGG 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 521
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 266
BsaI GGTCTC 2 cut(s) 68, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 1 cut(s) 422
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMI GCAATG 1 cut(s) 483
BsgI GTGCAG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 451
BshFI GGCC 3 cut(s) 97, 398, 480
BslI CCNNNNNNNGG 1 cut(s) 495
BsmAI GTCTC 2 cut(s) 68, 504
BsnI GGCC 3 cut(s) 97, 398, 480
Bso31I GGTCTC 2 cut(s) 68, 504
Bsp143I GATC 1 cut(s) 410
BspANI GGCC 3 cut(s) 97, 398, 480
BspFNI CGCG 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 434
BspTNI GGTCTC 2 cut(s) 68, 504
BsrDI GCAATG 1 cut(s) 483
BssMI GATC 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 99, 297
BstFNI CGCG 1 cut(s) 451
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 1 cut(s) 413
BstMAI GTCTC 2 cut(s) 68, 504
BstMBI GATC 1 cut(s) 410
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 420
BstUI CGCG 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 123
BstXI CCANNNNNNTGG 1 cut(s) 515
BsuRI GGCC 3 cut(s) 97, 398, 480
BtrI CACGTC 1 cut(s) 521
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 434
Cac8I GCNNGC 2 cut(s) 99, 297
CfoI GCGC 1 cut(s) 451
CseI GACGC 1 cut(s) 128
CviAII CATG 2 cut(s) 90, 332
CviJI RGCY 9 cut(s) 87, 97, 142, 178, 189, 287, 312, 398, 480
CviKI_1 RGCY 9 cut(s) 87, 97, 142, 178, 189, 287, 312, 398, 480
DpnI GATC 1 cut(s) 412
DpnII GATC 1 cut(s) 410
Eco31I GGTCTC 2 cut(s) 68, 504
Eco57I CTGAAG 2 cut(s) 410, 477
EcoRII CCWGG 1 cut(s) 420
FaeI CATG 2 cut(s) 93, 335
FaiI YATR 9 cut(s) 15, 67, 91, 183, 204, 267, 275, 333, 371
FatI CATG 2 cut(s) 89, 331
GlaI GCGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 3 cut(s) 97, 398, 480
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 451
Hin1II CATG 2 cut(s) 93, 335
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HpaI GTTAAC 1 cut(s) 435
Hpy166II GTNNAC 3 cut(s) 208, 365, 435
Hpy188I TCNGA 2 cut(s) 229, 318
Hpy188III TCNNGA 2 cut(s) 245, 290
Hpy8I GTNNAC 3 cut(s) 208, 365, 435
HpyAV CCTTC 3 cut(s) 334, 388, 501
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 520
HpyCH4V TGCA 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 520
Hsp92II CATG 2 cut(s) 93, 335
HspAI GCGC 1 cut(s) 449
KspAI GTTAAC 1 cut(s) 435
Kzo9I GATC 1 cut(s) 410
LmnI GCTCC 2 cut(s) 292, 309
LweI GCATC 1 cut(s) 456
MaeII ACGT 1 cut(s) 520
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 412
MboI GATC 1 cut(s) 410
MboII GAAGA 4 cut(s) 17, 128, 403, 465
MluCI AATT 2 cut(s) 194, 240
MnlI CCTC 4 cut(s) 77, 340, 433, 491
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 3 cut(s) 147, 434, 458
MslI CAYNNNNRTG 1 cut(s) 513
MspR9I CCNGG 1 cut(s) 422
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 1 cut(s) 451
NdeII GATC 1 cut(s) 410
NlaIII CATG 2 cut(s) 93, 335
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 19
PaqCI CACCTGC 1 cut(s) 434
PdmI GAANNNNTTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 3 cut(s) 147, 434, 458
Sau3AI GATC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 422
SetI ASST 8 cut(s) 54, 108, 191, 289, 314, 345, 448, 523
SfaNI GCATC 1 cut(s) 456
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 194, 240
StyD4I CCNGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 523
TasI AATT 2 cut(s) 194, 240
Tru1I TTAA 3 cut(s) 147, 434, 458
Tru9I TTAA 3 cut(s) 147, 434, 458
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspRI CASTG 1 cut(s) 28
XapI RAATTY 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.