Rmu_sc0008851.1_g000009

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008851.1
OG0009692
Physical Location & Seq
Reverse (-)
26854 .. 28660
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008851.1_g000009.1.cds

Sequence Viewer

Length: 486 bp
atggaaaatggatatggtgttgctggtaatcatacaggaagggaagtcaaggtggcagatctcatatgggtggagaccaatggaggctcatggtggcctgcacaggttgttaatgaaaacgctgtgagtgggaacaacaagcccctcaaaacatcatcaggggaagttcctgttcggctttatggaagctataaattaaacctgtccgatgctaatcatgcagtggaagatccgaaaacggaggaatcagactttgcaaggataaggagttctccaagattacagaagcaaggaaagaaggttgaggataaagcaaatggtaaacccataaagcaagatgggttgctgaagaatgccaaagaacatggattaagtatccagtcaaaagtgttgacagaggcaggtgcacgaagattaagagtgatgcaaaatcttggcctcattgccccttcagggtctccttaccacaaaaatggccgggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA PAS_3 PWWP

Protein Analysis

161

Amino Acids

17.54

Weight (kDa)

9.66

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 392
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 475
AcuI CTGAAG 2 cut(s) 368, 435
AfiI CCNNNNNNNGG 1 cut(s) 453
AloI GAACNNNNNNTCC 2 cut(s) 253, 285
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 2 cut(s) 68, 462
Alw44I GTGCAC 1 cut(s) 405
AlwI GGATC 1 cut(s) 224
AoxI GGCC 3 cut(s) 95, 436, 475
ApaLI GTGCAC 1 cut(s) 405
AsuC2I CCSGG 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 409
BccI CCATC 1 cut(s) 332
BciVI GTATCC 1 cut(s) 386
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 2 cut(s) 68, 462
BfuAI ACCTGC 1 cut(s) 392
BfuI GTATCC 1 cut(s) 386
BglII AGATCT 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 479
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 2 cut(s) 199, 414
BpuMI CCSGG 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 213
BsaI GGTCTC 2 cut(s) 68, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse1I ACTGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 213
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMI GCAATG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 379
BseSI GKGCMC 1 cut(s) 409
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 3 cut(s) 97, 438, 477
BsiHKAI GWGCWC 1 cut(s) 409
BsiSI CCGG 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 2 cut(s) 68, 462
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 3 cut(s) 97, 438, 477
Bso31I GGTCTC 2 cut(s) 68, 462
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 2 cut(s) 58, 229
BspANI GGCC 3 cut(s) 97, 438, 477
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 1 cut(s) 224
BspTNI GGTCTC 2 cut(s) 68, 462
BsrDI GCAATG 1 cut(s) 441
BsrI ACTGG 1 cut(s) 379
BssMI GATC 2 cut(s) 58, 229
BstC8I GCNNGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 61, 232
BstMAI GTCTC 2 cut(s) 68, 462
BstMBI GATC 2 cut(s) 58, 229
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 409
BstX2I RGATCY 2 cut(s) 58, 229
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 2 cut(s) 58, 229
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 3 cut(s) 97, 438, 477
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 99
CviAII CATG 3 cut(s) 90, 218, 365
CviJI RGCY 7 cut(s) 87, 97, 142, 178, 189, 438, 477
CviKI_1 RGCY 7 cut(s) 87, 97, 142, 178, 189, 438, 477
DpnI GATC 2 cut(s) 60, 231
DpnII GATC 2 cut(s) 58, 229
EaeI YGGCCR 1 cut(s) 475
Eco31I GGTCTC 2 cut(s) 68, 462
Eco57I CTGAAG 2 cut(s) 368, 435
FaeI CATG 3 cut(s) 93, 221, 368
FatI CATG 3 cut(s) 89, 217, 364
FauNDI CATATG 1 cut(s) 65
HaeIII GGCC 3 cut(s) 97, 438, 477
HapII CCGG 1 cut(s) 478
Hin1II CATG 3 cut(s) 93, 221, 368
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 478
Hpy166II GTNNAC 3 cut(s) 323, 393, 407
Hpy188I TCNGA 3 cut(s) 208, 234, 250
Hpy8I GTNNAC 3 cut(s) 323, 393, 407
HpyAV CCTTC 3 cut(s) 33, 292, 459
HpyCH4V TGCA 5 cut(s) 101, 221, 257, 407, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
Hsp92II CATG 3 cut(s) 93, 221, 368
Kzo9I GATC 2 cut(s) 58, 229
LweI GCATC 2 cut(s) 199, 414
MalI GATC 2 cut(s) 60, 231
MboI GATC 2 cut(s) 58, 229
MboII GAAGA 3 cut(s) 239, 361, 423
MflI RGATCY 2 cut(s) 58, 229
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 1 cut(s) 194
MnlI CCTC 6 cut(s) 77, 155, 235, 298, 391, 449
MseI TTAA 4 cut(s) 111, 197, 371, 416
MslI CAYNNNNRTG 2 cut(s) 68, 471
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 1 cut(s) 479
Mva1269I GAATGC 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 479
NdeI CATATG 1 cut(s) 65
NdeII GATC 2 cut(s) 58, 229
NlaIII CATG 3 cut(s) 93, 221, 368
PaqCI CACCTGC 1 cut(s) 392
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 245
PsuI RGATCY 2 cut(s) 58, 229
RseI CAYNNNNRTG 2 cut(s) 68, 471
SaqAI TTAA 4 cut(s) 111, 197, 371, 416
Sau3AI GATC 2 cut(s) 58, 229
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 1 cut(s) 409
SetI ASST 6 cut(s) 54, 108, 191, 204, 303, 406
SfaNI GCATC 2 cut(s) 199, 414
SmiMI CAYNNNNRTG 2 cut(s) 68, 471
Sse9I AATT 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 477
TasI AATT 1 cut(s) 194
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 4 cut(s) 111, 197, 371, 416
Tru9I TTAA 4 cut(s) 111, 197, 371, 416
TscAI CASTG 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 1 cut(s) 228
VneI GTGCAC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.