Rmu_sc0002867.1_g000020

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002867.1
OG0009692
Physical Location & Seq
Reverse (-)
90479 .. 92271
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002867.1_g000020.1.cds

Sequence Viewer

Length: 654 bp
atggaaaatggatatggtgttgctggtaatcatacaggaagggaagtcaaggtggcagatctcatatgggtggagaccaatggaggctcatggtggcctgcacaggttgttaatgaaaacgctgtgagtgggaacaacaagcccctgaaaacatcatcaggggaagttcctgttcggctttatggaagctataaattcttgtatgtggaccctcaaaaatgttcttctgattttgaaataattctcgagcagaataatggttcctgtagagagatttttctcaaagctctggagcaggatgcttatcacatgaaatcaggtagatcacagaagcaaggattcaaatctaaagttgatgcttctagaaacctgtccgatgctaatcatcaagtggaagatccgaaaacggaggaatcagactttgcaaggataaggagttctccaagattacagaagcaaggaaagaaggttgaggataaagcaaatggtaaacccataaagcaagatgggttgctgaagaatgccaaagaacatggattaagtatccagtcaaaagtgttgacagaggcaggtgcacgaagattaagagtgatgcaaaatcttggcctcattgccccttcagggtctccttaccacaaaaatggccgggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA PAS_3 PWWP

Protein Analysis

217

Amino Acids

24.04

Weight (kDa)

9.41

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 560
AclWI GGATC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 2 cut(s) 536, 603
AfiI CCNNNNNNNGG 1 cut(s) 621
AgsI TTSAA 2 cut(s) 236, 343
AloI GAACNNNNNNTCC 2 cut(s) 421, 453
AluBI AGCT 2 cut(s) 189, 287
AluI AGCT 2 cut(s) 189, 287
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 2 cut(s) 68, 630
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 3 cut(s) 95, 604, 643
ApaLI GTGCAC 1 cut(s) 573
ApoI RAATTY 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 647
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 577
BccI CCATC 1 cut(s) 500
BciVI GTATCC 1 cut(s) 554
BcnI CCSGG 1 cut(s) 647
BcoDI GTCTC 2 cut(s) 68, 630
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 265
BfuAI ACCTGC 1 cut(s) 560
BfuI GTATCC 1 cut(s) 554
BglII AGATCT 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 647
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 210, 262
BmrFI CCNGG 1 cut(s) 647
BmsI GCATC 4 cut(s) 289, 346, 367, 582
BpmI CTGGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 647
BsaBI GATNNNNATC 3 cut(s) 303, 343, 381
BsaI GGTCTC 2 cut(s) 68, 630
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse1I ACTGG 1 cut(s) 547
Bse3DI GCAATG 1 cut(s) 609
Bse8I GATNNNNATC 3 cut(s) 303, 343, 381
BseGI GGATG 1 cut(s) 304
BseJI GATNNNNATC 3 cut(s) 303, 343, 381
BseLI CCNNNNNNNGG 1 cut(s) 621
BseMI GCAATG 1 cut(s) 609
BseNI ACTGG 1 cut(s) 547
BseSI GKGCMC 1 cut(s) 577
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 3 cut(s) 97, 606, 645
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 646
BslI CCNNNNNNNGG 1 cut(s) 621
BsmAI GTCTC 2 cut(s) 68, 630
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 3 cut(s) 97, 606, 645
Bso31I GGTCTC 2 cut(s) 68, 630
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 3 cut(s) 58, 323, 397
BspANI GGCC 3 cut(s) 97, 606, 645
BspLI GGNNCC 2 cut(s) 210, 262
BspMI ACCTGC 1 cut(s) 560
BspPI GGATC 1 cut(s) 392
BspTNI GGTCTC 2 cut(s) 68, 630
BsrDI GCAATG 1 cut(s) 609
BsrI ACTGG 1 cut(s) 547
BssMI GATC 3 cut(s) 58, 323, 397
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 3 cut(s) 61, 326, 400
BstMAI GTCTC 2 cut(s) 68, 630
BstMBI GATC 3 cut(s) 58, 323, 397
BstSCI CCNGG 1 cut(s) 645
BstSFI CTRYAG 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 577
BstX2I RGATCY 2 cut(s) 58, 397
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 2 cut(s) 58, 397
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 3 cut(s) 97, 606, 645
BtsCI GGATG 1 cut(s) 304
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 208
CviAII CATG 3 cut(s) 90, 310, 533
CviJI RGCY 8 cut(s) 87, 97, 142, 178, 189, 287, 606, 645
CviKI_1 RGCY 8 cut(s) 87, 97, 142, 178, 189, 287, 606, 645
DpnI GATC 3 cut(s) 60, 325, 399
DpnII GATC 3 cut(s) 58, 323, 397
EaeI YGGCCR 1 cut(s) 643
Eco31I GGTCTC 2 cut(s) 68, 630
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 2 cut(s) 536, 603
Eco88I CYCGRG 1 cut(s) 245
FaeI CATG 3 cut(s) 93, 313, 536
FatI CATG 3 cut(s) 89, 309, 532
FauNDI CATATG 1 cut(s) 65
FokI GGATG 1 cut(s) 311
FspBI CTAG 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 3 cut(s) 97, 606, 645
HapII CCGG 1 cut(s) 646
Hin1II CATG 3 cut(s) 93, 313, 536
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 2 cut(s) 339, 413
HpaII CCGG 1 cut(s) 646
Hpy166II GTNNAC 4 cut(s) 208, 491, 561, 575
Hpy188I TCNGA 4 cut(s) 229, 376, 402, 418
Hpy188III TCNNGA 3 cut(s) 245, 290, 363
Hpy8I GTNNAC 4 cut(s) 208, 491, 561, 575
HpyAV CCTTC 3 cut(s) 33, 460, 627
HpyCH4V TGCA 4 cut(s) 101, 425, 575, 595
Hsp92II CATG 3 cut(s) 93, 313, 536
Kzo9I GATC 3 cut(s) 58, 323, 397
LmnI GCTCC 1 cut(s) 292
LweI GCATC 4 cut(s) 289, 346, 367, 582
MaeI CTAG 1 cut(s) 363
MalI GATC 3 cut(s) 60, 325, 399
MboI GATC 3 cut(s) 58, 323, 397
MboII GAAGA 4 cut(s) 216, 407, 529, 591
MflI RGATCY 2 cut(s) 58, 397
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 2 cut(s) 194, 240
MnlI CCTC 6 cut(s) 77, 222, 403, 466, 559, 617
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 3 cut(s) 111, 539, 584
MslI CAYNNNNRTG 2 cut(s) 68, 639
MspI CCGG 1 cut(s) 646
MspR9I CCNGG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 526
NciI CCSGG 1 cut(s) 647
NdeI CATATG 1 cut(s) 65
NdeII GATC 3 cut(s) 58, 323, 397
NlaIII CATG 3 cut(s) 93, 313, 536
NlaIV GGNNCC 2 cut(s) 210, 262
PaeR7I CTCGAG 1 cut(s) 245
PaqCI CACCTGC 1 cut(s) 560
PctI GAATGC 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 339, 413
PspN4I GGNNCC 2 cut(s) 210, 262
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 2 cut(s) 58, 397
RseI CAYNNNNRTG 2 cut(s) 68, 639
SaqAI TTAA 3 cut(s) 111, 539, 584
Sau3AI GATC 3 cut(s) 58, 323, 397
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 647
SduI GDGCHC 1 cut(s) 577
SetI ASST 8 cut(s) 54, 108, 191, 289, 322, 372, 471, 574
SfaNI GCATC 4 cut(s) 289, 346, 367, 582
SfcI CTRYAG 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 245
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 245
SmiMI CAYNNNNRTG 2 cut(s) 68, 639
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 194, 240
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 645
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 194, 240
TfiI GAWTC 2 cut(s) 339, 413
Tru1I TTAA 3 cut(s) 111, 539, 584
Tru9I TTAA 3 cut(s) 111, 539, 584
TspDTI ATGAA 2 cut(s) 129, 326
TspGWI ACGGA 1 cut(s) 422
VneI GTGCAC 1 cut(s) 573
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 194
XbaI TCTAGA 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.