Rw7G037760

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009692
Physical Location & Seq
Forward (+)
57263495 .. 57265449
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037760.1

Sequence Viewer

Length: 654 bp
ATGGAAAATGGATATGGTGTTGCTGGTAATCATACAGGAAGGGAAGTCAAGGTGGCAGATCTCATATGGGTGGAGACCAATGGAGGCTCATGGTGGCCTGCACAGGTTGTTAATGAAAACGCTGTGAGTGGGAACAACAAGCCCCTGAAAACATCATCAGGGGAAGTTCCTGTTCGGCTTTATGGAAGCTATAAATTCTTGTATGTGGACCCTCAAAAATGTTCTTCTGATTTTGAAATAATTCTCGAGCAGAATAATGGTTCCTGTAGAGAGATTTTTCTCAAAGCTCTGGAGCAGGATGCTTATCACATGAAATCAGGTAGATCACAGAAGCAAGGATTCAAATCTAAAGTTGATGCTTCTAGAAACCTGTCCGATGCTAATCATCAAGTGGAAGATCCGAAAACGGAGGAATCAGACTTTGCAAGGATAAGGAGTTCTCCAAGATTACAGAAGCAAGGAAAGAAGGTTGAGGATAAAGCAAATGGTAAACCCATAAAGCAAGATGGGTTGCTGAAGAATGCCAAAGAACATGGATTAAGTATCCAGTCAAAAGTGTTGACAGAGGCAGGTGCACGAAGATTAAGAGTGATGCAAAATCTTGGCCTCATTGCCCCTTCAGGGTCTCCTTACCACAAAAATGGCCGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA PAS_3 PWWP

Protein Analysis

217

Amino Acids

24.04

Weight (kDa)

9.41

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 20 - 100 4.4e-11 PWWP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 560
AclWI GGATC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 2 cut(s) 536, 603
AfiI CCNNNNNNNGG 1 cut(s) 621
AgsI TTSAA 2 cut(s) 236, 343
AloI GAACNNNNNNTCC 2 cut(s) 421, 453
AluBI AGCT 2 cut(s) 189, 287
AluI AGCT 2 cut(s) 189, 287
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 2 cut(s) 68, 630
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 3 cut(s) 95, 604, 643
ApaLI GTGCAC 1 cut(s) 573
ApoI RAATTY 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 647
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 577
BccI CCATC 1 cut(s) 500
BciVI GTATCC 1 cut(s) 554
BcnI CCSGG 1 cut(s) 647
BcoDI GTCTC 2 cut(s) 68, 630
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 265
BfuAI ACCTGC 1 cut(s) 560
BfuI GTATCC 1 cut(s) 554
BglII AGATCT 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 647
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 210, 262
BmrFI CCNGG 1 cut(s) 647
BmsI GCATC 4 cut(s) 289, 346, 367, 582
BpmI CTGGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 647
BsaBI GATNNNNATC 3 cut(s) 303, 343, 381
BsaI GGTCTC 2 cut(s) 68, 630
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse1I ACTGG 1 cut(s) 547
Bse3DI GCAATG 1 cut(s) 609
Bse8I GATNNNNATC 3 cut(s) 303, 343, 381
BseGI GGATG 1 cut(s) 304
BseJI GATNNNNATC 3 cut(s) 303, 343, 381
BseLI CCNNNNNNNGG 1 cut(s) 621
BseMI GCAATG 1 cut(s) 609
BseNI ACTGG 1 cut(s) 547
BseSI GKGCMC 1 cut(s) 577
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 3 cut(s) 97, 606, 645
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 646
BslI CCNNNNNNNGG 1 cut(s) 621
BsmAI GTCTC 2 cut(s) 68, 630
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 3 cut(s) 97, 606, 645
Bso31I GGTCTC 2 cut(s) 68, 630
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 3 cut(s) 58, 323, 397
BspANI GGCC 3 cut(s) 97, 606, 645
BspLI GGNNCC 2 cut(s) 210, 262
BspMI ACCTGC 1 cut(s) 560
BspPI GGATC 1 cut(s) 392
BspTNI GGTCTC 2 cut(s) 68, 630
BsrDI GCAATG 1 cut(s) 609
BsrI ACTGG 1 cut(s) 547
BssMI GATC 3 cut(s) 58, 323, 397
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 3 cut(s) 61, 326, 400
BstMAI GTCTC 2 cut(s) 68, 630
BstMBI GATC 3 cut(s) 58, 323, 397
BstSCI CCNGG 1 cut(s) 645
BstSFI CTRYAG 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 577
BstX2I RGATCY 2 cut(s) 58, 397
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 2 cut(s) 58, 397
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 3 cut(s) 97, 606, 645
BtsCI GGATG 1 cut(s) 304
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 208
CviAII CATG 3 cut(s) 90, 310, 533
CviJI RGCY 8 cut(s) 87, 97, 142, 178, 189, 287, 606, 645
CviKI_1 RGCY 8 cut(s) 87, 97, 142, 178, 189, 287, 606, 645
DpnI GATC 3 cut(s) 60, 325, 399
DpnII GATC 3 cut(s) 58, 323, 397
EaeI YGGCCR 1 cut(s) 643
Eco31I GGTCTC 2 cut(s) 68, 630
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 2 cut(s) 536, 603
Eco88I CYCGRG 1 cut(s) 245
FaeI CATG 3 cut(s) 93, 313, 536
FatI CATG 3 cut(s) 89, 309, 532
FauNDI CATATG 1 cut(s) 65
FokI GGATG 1 cut(s) 311
FspBI CTAG 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 3 cut(s) 97, 606, 645
HapII CCGG 1 cut(s) 646
Hin1II CATG 3 cut(s) 93, 313, 536
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 2 cut(s) 339, 413
HpaII CCGG 1 cut(s) 646
Hpy166II GTNNAC 4 cut(s) 208, 491, 561, 575
Hpy188I TCNGA 4 cut(s) 229, 376, 402, 418
Hpy188III TCNNGA 3 cut(s) 245, 290, 363
Hpy8I GTNNAC 4 cut(s) 208, 491, 561, 575
HpyAV CCTTC 3 cut(s) 33, 460, 627
HpyCH4V TGCA 4 cut(s) 101, 425, 575, 595
Hsp92II CATG 3 cut(s) 93, 313, 536
Kzo9I GATC 3 cut(s) 58, 323, 397
LmnI GCTCC 1 cut(s) 292
LweI GCATC 4 cut(s) 289, 346, 367, 582
MaeI CTAG 1 cut(s) 363
MalI GATC 3 cut(s) 60, 325, 399
MboI GATC 3 cut(s) 58, 323, 397
MboII GAAGA 4 cut(s) 216, 407, 529, 591
MflI RGATCY 2 cut(s) 58, 397
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 2 cut(s) 194, 240
MnlI CCTC 6 cut(s) 77, 222, 403, 466, 559, 617
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 3 cut(s) 111, 539, 584
MslI CAYNNNNRTG 2 cut(s) 68, 639
MspI CCGG 1 cut(s) 646
MspR9I CCNGG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 526
NciI CCSGG 1 cut(s) 647
NdeI CATATG 1 cut(s) 65
NdeII GATC 3 cut(s) 58, 323, 397
NlaIII CATG 3 cut(s) 93, 313, 536
NlaIV GGNNCC 2 cut(s) 210, 262
PaeR7I CTCGAG 1 cut(s) 245
PaqCI CACCTGC 1 cut(s) 560
PctI GAATGC 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 339, 413
PspN4I GGNNCC 2 cut(s) 210, 262
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 2 cut(s) 58, 397
RseI CAYNNNNRTG 2 cut(s) 68, 639
SaqAI TTAA 3 cut(s) 111, 539, 584
Sau3AI GATC 3 cut(s) 58, 323, 397
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 647
SduI GDGCHC 1 cut(s) 577
SetI ASST 8 cut(s) 54, 108, 191, 289, 322, 372, 471, 574
SfaNI GCATC 4 cut(s) 289, 346, 367, 582
SfcI CTRYAG 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 245
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 245
SmiMI CAYNNNNRTG 2 cut(s) 68, 639
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 194, 240
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 645
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 194, 240
TfiI GAWTC 2 cut(s) 339, 413
Tru1I TTAA 3 cut(s) 111, 539, 584
Tru9I TTAA 3 cut(s) 111, 539, 584
TspDTI ATGAA 2 cut(s) 129, 326
TspGWI ACGGA 1 cut(s) 422
VneI GTGCAC 1 cut(s) 573
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 194
XbaI TCTAGA 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.