Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009692

Physical Location & Seq

Genomic Coordinates Reverse (-)

43393947 .. 43399812

Gene Structure 5866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G530900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGAAAAGCAAACACCTTTCAACTGGGAAAGATCGTATTGATGTGAAAGATGAAGAGGATGTTGCTGCTAATCAATTGGGAGGGGAAGTTAAGGTGGCAGATCTGATATGGGTGAAGATCGATGGAGGCTCATGGTGGCCTGGACAGGTTGTTGATGACAATACTGTGAATGTGAACAACAAGCCAAGTAAAAGATCAGCAGGGAAGGTTCTTGTTCGGCTCTATGGAAGCTATAAACACTTGTATGTGGACCTTCTGAAATATCATTCTGAATTTGACATAATACTCAAGCAGAACAATGGTTGTTATAGGGAAATACTTCTAAAAGCTCTGGAGCAGGATGTTTCTTGCTTAAAATCCAGTAGATCAAAGAAGCAAGGGTCCAACTCTAAAGAAAGTGTAGCTGTTTATTCTCCTACACACATGTCCAATCGCAATCATGCAGGGGAAAATCACCAAACAGATTCGTCAAGCTTAACAATGAAAAGCAAACGCCTTTCAACTGGGAAAGATCGTATTGATGTGAAAGATGAAGAGGATGTTGCTGCTAATCAATTGGGAGGGAAAGTTAAGGTGCCAGATCTGATATGGGTGAAGATCAATGGAGGCTCATGGTGGCCTGCACAGGTTGTTGATGACAATACTGTGAATGTGAACAACAAGCCAAGTAAAAGATCAGCAGGGAAGGTTCTTGTTCGGCTCTATGGAAGCTATAAATACTTGTATGTGGACCCTCTGAAATATCATTCTGAATTTGACATAATACTCAAGCAGAACAATGGTTGTTATAGGGAAATACTTCTAAAAGCTCTGGAGCAGGATGTTTCTTGCTTAAAATCCAATAGATCAAAGAAGCAAGGGTCTGAGTCTAAAGAAAGTGTAGCAGTTTATTCTCCTACATGCGTGTCCAATCATAATCATGCAAGGGAAAATCACCAAACAGATTCGTCAAGCTTAACTACTGAGGTTCAGAGAACTGAATTTTCTGTAAGGGTTTCTCCGAGAAGACAGCAATATGTCACTATACCACAAAGTAAGCTGGAGCTAAATATGCCAATTGCCAAAGAGGAAGAAGCAAAAAGAAAATCCCCTAGGGAAGATGGTTTGCAAAAGAAACTTAAACGAAATGGCTCAAGTGATCAGGCAGAAGTGAGTGCTCGGAGATTAAGAGTGATGCAACATCTTGGCCTGATTGCTCCTTCAGGATCTCCGTTCCACAAAAATGGACTCATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

413

Amino Acids

46.3

Weight (kDa)

9.44

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35450
malus_domestica	MD08G1196600.v1.1
prunus_persica	Prupe.1G530900_v2.0.a1 Prupe.1G530900_v2.0.a1 Prupe.1G530900_v2.0.a1 Prupe.1G530900_v2.0.a1 Prupe.1G530900_v2.0.a1 Prupe.1G530900_v2.0.a1 Prupe.1G530900_v2.0.a1 Prupe.1G530900_v2.0.a1 Prupe.1G530900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0236831
rosa_laevigata	RLG00000001058
rosa_multiflora	Rmu_sc0002867.1_g000020 Rmu_sc0008851.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224790
rosa_rugosa	Rorug07G0299700
rosa_samantha	Rh7AG454900 Rh7BG426100 Rh7CG473600 Rh7DG442900
rosa_wichuraiana	Rw7G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	574
AclWI	GGATC	1 cut(s)	1213
AcsI	RAATTY	3 cut(s)	272, 752, 980
AcuI	CTGAAG	1 cut(s)	1185
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	2 cut(s)	21, 501
AhdI	GACNNNNNGTC	1 cut(s)	1232
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	9 cut(s)	231, 329, 404, 474, 711, 809, 954, 1039, 1045
AluI	AGCT	9 cut(s)	231, 329, 404, 474, 711, 809, 954, 1039, 1045
Alw21I	GWGCWC	1 cut(s)	1159
AlwI	GGATC	1 cut(s)	1213
AoxI	GGCC	3 cut(s)	137, 617, 1186
ApeKI	GCWGC	2 cut(s)	65, 545
ApoI	RAATTY	3 cut(s)	272, 752, 980
Asp700I	GAANNNNTTC	2 cut(s)	318, 798
AspA2I	CCTAGG	1 cut(s)	1091
AspS9I	GGNCC	3 cut(s)	250, 381, 730
AsuHPI	GGTGA	4 cut(s)	124, 446, 604, 926
AvaII	GGWCC	3 cut(s)	250, 381, 730
AvrII	CCTAGG	1 cut(s)	1091
BanI	GGYRCC	1 cut(s)	574
BbsI	GAAGAC	1 cut(s)	1012
Bbv12I	GWGCWC	1 cut(s)	1159
BbvI	GCAGC	2 cut(s)	52, 532
BccI	CCATC	2 cut(s)	116, 1094
BciT130I	CCWGG	1 cut(s)	141
BclI	TGATCA	1 cut(s)	1138
BfaI	CTAG	1 cut(s)	1092
BglII	AGATCT	2 cut(s)	100, 580
BisI	GCNGC	2 cut(s)	66, 546
BlnI	CCTAGG	1 cut(s)	1091
BlsI	GCNGC	2 cut(s)	67, 547
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	3 cut(s)	250, 381, 730
BmeRI	GACNNNNNGTC	1 cut(s)	1232
BmgT120I	GGNCC	3 cut(s)	250, 381, 730
BmiI	GGNNCC	3 cut(s)	382, 576, 732
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	2 cut(s)	33, 513
BmsI	GCATC	1 cut(s)	1164
BmuI	ACTGGG	2 cut(s)	33, 513
BpiI	GAAGAC	1 cut(s)	1012
BpmI	CTGGAG	3 cut(s)	353, 833, 1061
BpuEI	CTTGAG	3 cut(s)	272, 752, 1117
Bsa29I	ATCGAT	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	1091
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 552, 582
Bse1I	ACTGG	3 cut(s)	28, 360, 508
BseBI	CCWGG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	1091
BseGI	GGATG	4 cut(s)	64, 346, 544, 826
BseMII	CTCAG	2 cut(s)	855, 954
BseNI	ACTGG	3 cut(s)	28, 360, 508
BseXI	GCAGC	2 cut(s)	52, 532
BsgI	GTGCAG	1 cut(s)	606
BshFI	GGCC	3 cut(s)	139, 619, 1188
BshNI	GGYRCC	1 cut(s)	574
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	1159
BsnI	GGCC	3 cut(s)	139, 619, 1188
Bsp1286I	GDGCHC	1 cut(s)	1159
BspANI	GGCC	3 cut(s)	139, 619, 1188
BspCNI	CTCAG	2 cut(s)	856, 955
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	382, 576, 732
BspPI	GGATC	1 cut(s)	1213
BspT107I	GGYRCC	1 cut(s)	574
BsrI	ACTGG	3 cut(s)	28, 360, 508
BssECI	CCNNGG	1 cut(s)	1091
BssT1I	CCWWGG	1 cut(s)	1091
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	166, 646
Bst6I	CTCTTC	2 cut(s)	48, 528
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	2 cut(s)	864, 963
BstF5I	GGATG	4 cut(s)	64, 346, 544, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	1051
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	2 cut(s)	427, 903
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	52, 532
BstV2I	GAAGAC	1 cut(s)	1012
BstX2I	RGATCY	3 cut(s)	100, 580, 1205
BstXI	CCANNNNNNTGG	1 cut(s)	1223
BstYI	RGATCY	3 cut(s)	100, 580, 1205
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	139, 619, 1188
BsuTUI	ATCGAT	1 cut(s)	120
BtsCI	GGATG	4 cut(s)	64, 346, 544, 826
Cac8I	GCNNGC	1 cut(s)	621
Cfr13I	GGNCC	3 cut(s)	250, 381, 730
ClaI	ATCGAT	1 cut(s)	120
CviAII	CATG	6 cut(s)	132, 424, 440, 612, 900, 920
DdeI	CTNAG	2 cut(s)	864, 963
DriI	GACNNNNNGTC	1 cut(s)	1232
Eam1104I	CTCTTC	2 cut(s)	48, 528
Eam1105I	GACNNNNNGTC	1 cut(s)	1232
EarI	CTCTTC	2 cut(s)	48, 528
Eco130I	CCWWGG	1 cut(s)	1091
Eco47I	GGWCC	3 cut(s)	250, 381, 730
Eco57I	CTGAAG	1 cut(s)	1185
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	1091
ErhI	CCWWGG	1 cut(s)	1091
FaeI	CATG	6 cut(s)	135, 427, 443, 615, 903, 923
FatI	CATG	6 cut(s)	131, 423, 439, 611, 899, 919
FbaI	TGATCA	1 cut(s)	1138
Fnu4HI	GCNGC	2 cut(s)	66, 546
FokI	GGATG	4 cut(s)	71, 353, 551, 833
Fsp4HI	GCNGC	2 cut(s)	66, 546
FspBI	CTAG	1 cut(s)	1092
GluI	GCNGC	2 cut(s)	66, 546
GsuI	CTGGAG	3 cut(s)	353, 833, 1061
HaeIII	GGCC	3 cut(s)	139, 619, 1188
Hin1II	CATG	6 cut(s)	135, 427, 443, 615, 903, 923
HindIII	AAGCTT	2 cut(s)	472, 952
HinfI	GANTC	4 cut(s)	464, 866, 944, 1227
HphI	GGTGA	4 cut(s)	124, 446, 604, 926
Hpy166II	GTNNAC	4 cut(s)	175, 250, 655, 730
Hpy188III	TCNNGA	3 cut(s)	332, 812, 1203
Hpy8I	GTNNAC	4 cut(s)	175, 250, 655, 730
HpyAV	CCTTC	4 cut(s)	199, 263, 679, 1209
HpyCH4III	ACNGT	2 cut(s)	166, 646
HpyCH4V	TGCA	5 cut(s)	443, 623, 923, 1108, 1177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1051
HpyF3I	CTNAG	2 cut(s)	864, 963
Hsp92II	CATG	6 cut(s)	135, 427, 443, 615, 903, 923
Ksp22I	TGATCA	1 cut(s)	1138
LmnI	GCTCC	4 cut(s)	334, 814, 1042, 1201
Lsp1109I	GCAGC	2 cut(s)	52, 532
LweI	GCATC	1 cut(s)	1164
MaeI	CTAG	1 cut(s)	1092
MaeIII	GTNAC	1 cut(s)	1018
MboII	GAAGA	7 cut(s)	65, 127, 545, 607, 1017, 1082, 1109
MfeI	CAATTG	3 cut(s)	74, 554, 1056
MflI	RGATCY	3 cut(s)	100, 580, 1205
MhlI	GDGCHC	1 cut(s)	1159
MluCI	AATT	6 cut(s)	74, 272, 554, 752, 980, 1056
MlyI	GAGTC	2 cut(s)	875, 1221
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	9 cut(s)	49, 74, 119, 529, 554, 599, 744, 958, 1060
MroXI	GAANNNNTTC	2 cut(s)	318, 798
MseI	TTAA	8 cut(s)	90, 353, 476, 570, 833, 956, 1119, 1166
MslI	CAYNNNNRTG	3 cut(s)	243, 918, 1221
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	3 cut(s)	74, 554, 1056
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	1051
NlaIII	CATG	6 cut(s)	135, 427, 443, 615, 903, 923
NlaIV	GGNNCC	3 cut(s)	382, 576, 732
NmuCI	GTSAC	1 cut(s)	1018
NspI	RCATGY	2 cut(s)	427, 903
PciI	ACATGT	1 cut(s)	423
PdmI	GAANNNNTTC	2 cut(s)	318, 798
PfeI	GAWTC	2 cut(s)	464, 944
PkrI	GCNGC	2 cut(s)	67, 547
PleI	GAGTC	2 cut(s)	874, 1221
PpsI	GAGTC	2 cut(s)	874, 1221
PscI	ACATGT	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	382, 576, 732
PspPI	GGNCC	3 cut(s)	250, 381, 730
PsuI	RGATCY	3 cut(s)	100, 580, 1205
RseI	CAYNNNNRTG	3 cut(s)	243, 918, 1221
SaqAI	TTAA	8 cut(s)	90, 353, 476, 570, 833, 956, 1119, 1166
SatI	GCNGC	2 cut(s)	66, 546
Sau96I	GGNCC	3 cut(s)	250, 381, 730
SchI	GAGTC	2 cut(s)	875, 1221
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	1159
SfaNI	GCATC	1 cut(s)	1164
SinI	GGWCC	3 cut(s)	250, 381, 730
SmiMI	CAYNNNNRTG	3 cut(s)	243, 918, 1221
SmlI	CTYRAG	3 cut(s)	287, 767, 1132
SmoI	CTYRAG	3 cut(s)	287, 767, 1132
Sse9I	AATT	6 cut(s)	74, 272, 554, 752, 980, 1056
SspMI	CTAG	1 cut(s)	1092
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	1091
TaaI	ACNGT	2 cut(s)	166, 646
TaqI	TCGA	1 cut(s)	120
TasI	AATT	6 cut(s)	74, 272, 554, 752, 980, 1056
TfiI	GAWTC	2 cut(s)	464, 944
Tru1I	TTAA	8 cut(s)	90, 353, 476, 570, 833, 956, 1119, 1166
Tru9I	TTAA	8 cut(s)	90, 353, 476, 570, 833, 956, 1119, 1166
TseFI	GTSAC	1 cut(s)	1018
TseI	GCWGC	2 cut(s)	65, 545
Tsp45I	GTSAC	1 cut(s)	1018
TspDTI	ATGAA	4 cut(s)	17, 66, 497, 546
TspGWI	ACGGA	1 cut(s)	1200
VpaK11BI	GGWCC	3 cut(s)	250, 381, 730
XapI	RAATTY	3 cut(s)	272, 752, 980
XceI	RCATGY	2 cut(s)	427, 903
XcmI	CCANNNNNNNNNTGG	1 cut(s)	585
XmaJI	CCTAGG	1 cut(s)	1091
XmnI	GAANNNNTTC	2 cut(s)	318, 798
XspI	CTAG	1 cut(s)	1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.