MD08G1196600.v1.1

PWWP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0009692
Physical Location & Seq
Reverse (-)
25363459 .. 25367702
4244 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1196600.v1.1.491

Sequence Viewer

Length: 456 bp
ATGATACTCAAGCAGAACAACGGTTGTTATAGGGAAATACTCCTAAAAGCTCTGGAGCAGGTTTCTAGCTCAAAATCCGACAGATCAAAGAAGCAAGGATCCAAGTCTAAAGAAAATGGAGCAGTTGATCTTTCTAGGCGTAAGTCCAGTCGTAATCACGCAAGGGAAAATCCGCAAACAGATTCTTCAAACTTGAATGCTGATGCTCAGAGAACGGAAATTTCTGTAAGGGTTTCTCCAAGAAAGCGGAATGCCGTTATACCACAAAGTAAGGTGGAGCAGAAGACTCTACTTGCACTAAGGGTTGAAAATACAAATGGAAAAGCTTCCAAGCAAAGTGGGGCAGAAGTGGTATCAAAGTCCAAAGAAGTGAGTGCCCGGAGATTGAGAGTGATGCAACAGCTTGGCCTGATTGCTCCTTCGGGATCTTCATTCCACAAAAATGGACTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

152

Amino Acids

16.64

Weight (kDa)

10.73

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AciI CCGC 2 cut(s) 173, 247
AclWI GGATC 3 cut(s) 93, 106, 433
AcsI RAATTY 1 cut(s) 219
AgsI TTSAA 3 cut(s) 189, 196, 308
AluBI AGCT 4 cut(s) 50, 69, 326, 403
AluI AGCT 4 cut(s) 50, 69, 326, 403
AlwI GGATC 3 cut(s) 93, 106, 433
AoxI GGCC 1 cut(s) 406
ApoI RAATTY 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 379
BaeGI GKGCMC 1 cut(s) 379
BamHI GGATCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 290
BceAI ACGGC 1 cut(s) 239
BcnI CCSGG 1 cut(s) 379
BfaI CTAG 2 cut(s) 66, 135
BfuAI ACCTGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 2 cut(s) 193, 384
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 379
BshFI GGCC 1 cut(s) 408
BsiSI CCGG 1 cut(s) 379
BsmI GAATGC 2 cut(s) 202, 256
BsnI GGCC 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 4 cut(s) 83, 98, 127, 425
BspACI CCGC 2 cut(s) 173, 247
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 3 cut(s) 93, 106, 433
BsrI ACTGG 1 cut(s) 147
BssMI GATC 4 cut(s) 83, 98, 127, 425
Bst4CI ACNGT 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 207, 299
BstKTI GATC 4 cut(s) 86, 101, 130, 428
BstMBI GATC 4 cut(s) 83, 98, 127, 425
BstSCI CCNGG 1 cut(s) 377
BstSLI GKGCMC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 2 cut(s) 98, 425
BstXI CCANNNNNNTGG 1 cut(s) 443
BstYI RGATCY 2 cut(s) 98, 425
BsuRI GGCC 1 cut(s) 408
BveI ACCTGC 1 cut(s) 49
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviJI RGCY 5 cut(s) 50, 69, 326, 403, 408
CviKI_1 RGCY 5 cut(s) 50, 69, 326, 403, 408
DdeI CTNAG 2 cut(s) 207, 299
DpnI GATC 4 cut(s) 85, 100, 129, 427
DpnII GATC 4 cut(s) 83, 98, 127, 425
FaiI YATR 2 cut(s) 30, 260
FspBI CTAG 2 cut(s) 66, 135
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 408
HapII CCGG 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 2 cut(s) 182, 286
HpaII CCGG 1 cut(s) 379
Hpy188I TCNGA 2 cut(s) 79, 210
Hpy188III TCNNGA 2 cut(s) 53, 423
HpyAV CCTTC 1 cut(s) 429
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 296, 397
HpyF3I CTNAG 2 cut(s) 207, 299
Kzo9I GATC 4 cut(s) 83, 98, 127, 425
LmnI GCTCC 4 cut(s) 55, 119, 277, 421
LpnPI CCDG 5 cut(s) 38, 44, 160, 392, 422
LweI GCATC 2 cut(s) 193, 384
MaeI CTAG 2 cut(s) 66, 135
MalI GATC 4 cut(s) 85, 100, 129, 427
MboI GATC 4 cut(s) 83, 98, 127, 425
MboII GAAGA 3 cut(s) 177, 295, 420
MflI RGATCY 2 cut(s) 98, 425
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 1 cut(s) 219
MlyI GAGTC 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 102
MroXI GAANNNNTTC 1 cut(s) 325
MslI CAYNNNNRTG 1 cut(s) 441
MspI CCGG 1 cut(s) 379
MspR9I CCNGG 1 cut(s) 379
Mva1269I GAATGC 2 cut(s) 202, 256
NciI CCSGG 1 cut(s) 379
NdeII GATC 4 cut(s) 83, 98, 127, 425
NlaIV GGNNCC 1 cut(s) 100
PctI GAATGC 2 cut(s) 202, 256
PdmI GAANNNNTTC 1 cut(s) 325
PfeI GAWTC 1 cut(s) 182
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 100
PsuI RGATCY 2 cut(s) 98, 425
RseI CAYNNNNRTG 1 cut(s) 441
Sau3AI GATC 4 cut(s) 83, 98, 127, 425
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 1 cut(s) 379
SetI ASST 6 cut(s) 52, 63, 71, 276, 328, 405
SfaNI GCATC 2 cut(s) 193, 384
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 1 cut(s) 219
SsiI CCGC 2 cut(s) 173, 247
SspMI CTAG 2 cut(s) 66, 135
StyD4I CCNGG 1 cut(s) 377
TaaI ACNGT 1 cut(s) 23
TasI AATT 1 cut(s) 219
TfiI GAWTC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 1 cut(s) 230
XapI RAATTY 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 325
XspI CTAG 2 cut(s) 66, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.