Rh7CG473600

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009692
Physical Location & Seq
Forward (+)
63612654 .. 63615793
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG473600.1

Sequence Viewer

Length: 504 bp
ATGGAAAATGGATATGGTGTTACTGGTAATCATACAGGAAGGGAAGTCAAGGTGGCAGATCTCATATGGGTGGAGACCAATGGAGGCTCATGGTGGCCTGCACAGGTTGTTAATGAAAACGCTGTGAGTGGGAACAACAAGCCCCTCAAAACATCATCAGGGGAAGTTCCTGTTCGGCTTTATGGAAGCTATAAATTCTTGTATGTGGACCCTCAAAAATGTTCTTCTGATTTTGAAATAATTCTCGAGCAGAATAATGGTTCCTATAGAGAGATTTTTCTCAAAGCTCTGGAGCAGGATGCTTATCACATGAAATCAGGTAGATCAAAGAAGCAAGGATTCAAATCTAAAGTTGATGCTTCTAGAAACCTGTCCGATGCTAATCATGCAGTGGACGATCCGAAAACGGAGGAATCAAACTTTGTAAGTTTTGATTTTGAATCATTCTTACTCTTTAAATTGCTTTTTAACGTCACATATGGGTACCTGGTTGGTGACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA PAS_3 PWWP

Protein Analysis

167

Amino Acids

18.83

Weight (kDa)

5.4

Isoelectric Point (pI)

16.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 20 - 100 2.4e-11 PWWP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 483
AccB1I GGYRCC 1 cut(s) 483
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 1 cut(s) 485
AgsI TTSAA 3 cut(s) 236, 343, 440
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 2 cut(s) 189, 287
AluI AGCT 2 cut(s) 189, 287
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 240
Asp718I GGTACC 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 483
BciT130I CCWGG 1 cut(s) 488
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 265
BglII AGATCT 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 488
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 3 cut(s) 210, 262, 485
BmrFI CCNGG 1 cut(s) 488
BmsI GCATC 3 cut(s) 289, 346, 367
BpmI CTGGAG 1 cut(s) 311
BsaBI GATNNNNATC 3 cut(s) 303, 343, 381
BsaI GGTCTC 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 28
Bse8I GATNNNNATC 3 cut(s) 303, 343, 381
BseBI CCWGG 1 cut(s) 488
BseGI GGATG 1 cut(s) 304
BseJI GATNNNNATC 3 cut(s) 303, 343, 381
BseNI ACTGG 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 1 cut(s) 97
BshNI GGYRCC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 68
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 245
Bsp143I GATC 3 cut(s) 58, 323, 397
BspANI GGCC 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 210, 262, 485
BspPI GGATC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 483
BspTNI GGTCTC 1 cut(s) 68
BsrI ACTGG 1 cut(s) 28
BssMI GATC 3 cut(s) 58, 323, 397
Bst2UI CCWGG 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 3 cut(s) 61, 326, 400
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 3 cut(s) 58, 323, 397
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 486
BstSFI CTRYAG 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 208
CsiI ACCWGGT 1 cut(s) 486
Csp6I GTAC 1 cut(s) 484
CviAII CATG 3 cut(s) 90, 310, 386
CviJI RGCY 6 cut(s) 87, 97, 142, 178, 189, 287
CviKI_1 RGCY 6 cut(s) 87, 97, 142, 178, 189, 287
CviQI GTAC 1 cut(s) 484
DpnI GATC 3 cut(s) 60, 325, 399
DpnII GATC 3 cut(s) 58, 323, 397
DraI TTTAAA 1 cut(s) 457
Eco31I GGTCTC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 486
FaeI CATG 3 cut(s) 93, 313, 389
FatI CATG 3 cut(s) 89, 309, 385
FauNDI CATATG 2 cut(s) 65, 478
FokI GGATG 1 cut(s) 311
FspBI CTAG 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 1 cut(s) 97
Hin1II CATG 3 cut(s) 93, 313, 389
HinfI GANTC 3 cut(s) 339, 413, 440
Hpy166II GTNNAC 2 cut(s) 208, 394
Hpy188I TCNGA 3 cut(s) 229, 376, 402
Hpy188III TCNNGA 3 cut(s) 245, 290, 363
Hpy8I GTNNAC 2 cut(s) 208, 394
HpyAV CCTTC 1 cut(s) 33
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 2 cut(s) 101, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 3 cut(s) 93, 313, 389
KpnI GGTACC 1 cut(s) 487
Kzo9I GATC 3 cut(s) 58, 323, 397
LmnI GCTCC 1 cut(s) 292
LweI GCATC 3 cut(s) 289, 346, 367
MabI ACCWGGT 1 cut(s) 486
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 3 cut(s) 19, 472, 494
MalI GATC 3 cut(s) 60, 325, 399
MboI GATC 3 cut(s) 58, 323, 397
MboII GAAGA 1 cut(s) 216
MflI RGATCY 1 cut(s) 58
MluCI AATT 3 cut(s) 194, 240, 458
MnlI CCTC 4 cut(s) 77, 155, 222, 403
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 3 cut(s) 111, 456, 468
MslI CAYNNNNRTG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 488
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeI CATATG 2 cut(s) 65, 478
NdeII GATC 3 cut(s) 58, 323, 397
NlaIII CATG 3 cut(s) 93, 313, 389
NlaIV GGNNCC 3 cut(s) 210, 262, 485
NmuCI GTSAC 2 cut(s) 472, 494
PaeR7I CTCGAG 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 3 cut(s) 339, 413, 440
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 3 cut(s) 210, 262, 485
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 3 cut(s) 111, 456, 468
Sau3AI GATC 3 cut(s) 58, 323, 397
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 488
SetI ASST 8 cut(s) 54, 108, 191, 289, 322, 372, 474, 489
SexAI ACCWGGT 1 cut(s) 486
SfaNI GCATC 3 cut(s) 289, 346, 367
SfcI CTRYAG 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 245
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 3 cut(s) 194, 240, 458
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 486
TaiI ACGT 1 cut(s) 474
TaqI TCGA 1 cut(s) 246
TasI AATT 3 cut(s) 194, 240, 458
TfiI GAWTC 3 cut(s) 339, 413, 440
Tru1I TTAA 3 cut(s) 111, 456, 468
Tru9I TTAA 3 cut(s) 111, 456, 468
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 2 cut(s) 472, 494
Tsp45I GTSAC 2 cut(s) 472, 494
TspDTI ATGAA 2 cut(s) 129, 326
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 194
XbaI TCTAGA 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.