Rorug07G0299700

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0009692
Physical Location & Seq
Reverse (-)
29614967 .. 29620306
5340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0299700.1

Sequence Viewer

Length: 1491 bp
ATGGCGGCATCAGCAGCTGACCCCTCCGACGAAGCCAAGCACATCGAGCGACTCAATGAGTCCAAGGACAAATCCCAGGTCCTCTTTTTCCCATCAATTCGATTAATTTCCCCTAAAATTTTCGTTTCTAGGGTTTGGGGTTTTAGAGTAATGCGGGTTTTTGTTGTTTATTGTTTCAGAATGTCGAGGACGAGCATGAAGGCCAAGCAGCTTATTCCCAGGTTCTTCCTCGGGCTTTCCTTGCCGGCTATAGATACTCATCTTGATTTGATTGAAGAAGAAGAGCTACCTGACTTCATAGTGCTAATAGGTGTTGCCTATCTGTACATGGTTCGAGTGCAAGCTATTCGGGGGCTTCCCCTTTTCTGCAAGGACAACCCTGAACACGTCTCGAAGATTGTAGACATTCTTGTGCAACTCCTTCAAGCCGATGAGTTTGTGGAGTGTGATGCTGTGCATAAGGCTCTTATGGCCCTTTTGAGGAAGGATGTGAAAGAACATGCAGCTTCTTTGAGAGCCTTGTTCAAGCACATTGGAAGCGTTGATGAACCAAGCCAAGACGATGTTATTCTTGAGAAATTCCTAAGCTTTATCAGAGATAAGGTATTTCCTACTAAAGCTGAACTTTTGAAGCCTCAGGAGGAAATGGAGAGGCATATTATTGACTTGATAAAAAAGAGTTTACAAGATGTAACTGGAGCAGAATTTAGAATGTTTATGGACCTTTTAAAAGGTTTGAGCATCTTTGGGGATAAAGCTCCTAAAGAACAGAGGGTAGAACTTGTTGGAATTATTGAAGGACAGGCTGATTTAGATGCTCAATTCAATGTTTCAGACGCAGACCATATCGACAGGTTGATATCTTGCCTATTTATGGCTCTGCCATTTATTGTGAGAGGTGCACCAAGCAGCAAATTCCTCAACTATCTGAACAAACACATCCTTCCTGTTTCGGATAAGCTTCCTGATGAACGAAGGCTAGATTTGCTGAAGGCCCTTGCAGAAGTTGCACCATTCACCACACCACAAGATTCACGTCAGATTCTACCTTCTGTGGTTCAGCTGTTAAAGAAAAACATGCCTTGGAGAAAGACGGAGAGGAGTTCAACTTCACTTATGTCGAATGCTTGTTGTACACATTTCACCATCTTGCTCACAAGGTCTTGGGTTCCAAATGCTACCAACAGTTTATGCGGCGACAAGATAGTAACAGGACAACCATCAGATATGCTTGGTGAGGACTTTACAGAGCAGTATATATGTTCATGTTATTGTCATTTCAAAGAAGCGTCTGCGAAGATTGAAGGTTCACTAGCTTTATTCAGTTCCCTAGGAAACATGTTGCTGTTTCAATTCCTAGTTAATGTTCTTGAAGGAGATTTTCAACCTCGCAACTGTGTCTATGCAGAAATTGCAAACTGGGTCCTTCTGAGAGAGTCTTTGCTCAACATGCTTTTGGTATGTATTTCTCTCTTGGCCCATGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA PAS_3 PWWP

Protein Analysis

496

Amino Acids

56.27

Weight (kDa)

6.0

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
API5 PF05918 62 - 419 1e-129 Apoptosis inhibitory protein 5 (API5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 402
AciI CCGC 3 cut(s) 5, 154, 1194
AcsI RAATTY 4 cut(s) 117, 578, 704, 914
AcuI CTGAAG 1 cut(s) 1010
AfaI GTAC 2 cut(s) 326, 1135
AfiI CCNNNNNNNGG 2 cut(s) 480, 874
AflIII ACRYGT 2 cut(s) 385, 1338
AjiI CACGTC 2 cut(s) 388, 1037
AjnI CCWGG 2 cut(s) 75, 218
Alw21I GWGCWC 1 cut(s) 904
Alw26I GTCTC 1 cut(s) 394
Alw44I GTGCAC 1 cut(s) 900
AlwNI CAGNNNCTG 1 cut(s) 17
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 4 cut(s) 201, 471, 993, 1476
ApaLI GTGCAC 1 cut(s) 900
ApeKI GCWGC 4 cut(s) 14, 208, 503, 909
ApoI RAATTY 4 cut(s) 117, 578, 704, 914
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AseI ATTAAT 1 cut(s) 104
AspA2I CCTAGG 1 cut(s) 1330
AspS9I GGNCC 6 cut(s) 79, 472, 721, 994, 1423, 1477
AsuHPI GGTGA 3 cut(s) 1009, 1135, 1247
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 3 cut(s) 79, 721, 1423
AvrII CCTAGG 1 cut(s) 1330
AxyI CCTNAGG 1 cut(s) 636
BaeGI GKGCMC 1 cut(s) 904
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
Bbv12I GWGCWC 1 cut(s) 904
BbvI GCAGC 4 cut(s) 26, 220, 515, 921
BccI CCATC 3 cut(s) 100, 1154, 1228
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 2 cut(s) 77, 220
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 5 cut(s) 129, 980, 1313, 1331, 1358
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 6 cut(s) 6, 15, 209, 504, 910, 1195
BlnI CCTAGG 1 cut(s) 1330
BlsI GCNGC 6 cut(s) 7, 16, 210, 505, 911, 1196
Bme1390I CCNGG 2 cut(s) 77, 220
Bme18I GGWCC 3 cut(s) 79, 721, 1423
BmeT110I CYCGRG 1 cut(s) 230
BmgBI CACGTC 2 cut(s) 388, 1037
BmgT120I GGNCC 6 cut(s) 79, 472, 721, 994, 1423, 1477
BmiI GGNNCC 2 cut(s) 1170, 1424
BmrFI CCNGG 2 cut(s) 77, 220
BmrI ACTGGG 1 cut(s) 1429
BmsI GCATC 4 cut(s) 17, 439, 750, 805
BmuI ACTGGG 1 cut(s) 1429
BpmI CTGGAG 1 cut(s) 717
Bpu10I CCTNAGC 1 cut(s) 584
BpuEI CTTGAG 1 cut(s) 593
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 6 cut(s) 63, 75, 218, 229, 1082, 1330
Bsc4I CCNNNNNNNGG 2 cut(s) 480, 874
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 700, 1424
Bse21I CCTNAGG 1 cut(s) 636
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 2 cut(s) 77, 220
BseDI CCNNGG 6 cut(s) 63, 75, 218, 229, 1082, 1330
BseGI GGATG 2 cut(s) 493, 939
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 480, 874
BseMII CTCAG 2 cut(s) 650, 1421
BseNI ACTGG 2 cut(s) 700, 1424
BseRI GAGGAG 1 cut(s) 1114
BseSI GKGCMC 1 cut(s) 904
BseXI GCAGC 4 cut(s) 26, 220, 515, 921
BshFI GGCC 4 cut(s) 203, 473, 995, 1478
BsiHKAI GWGCWC 1 cut(s) 904
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 480, 874
BsmAI GTCTC 1 cut(s) 394
BsmBI CGTCTC 1 cut(s) 394
BsmI GAATGC 1 cut(s) 1129
BsnI GGCC 4 cut(s) 203, 473, 995, 1478
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 904
Bsp1407I TGTACA 2 cut(s) 324, 1133
BspACI CCGC 3 cut(s) 5, 154, 1194
BspANI GGCC 4 cut(s) 203, 473, 995, 1478
BspCNI CTCAG 2 cut(s) 649, 1422
BspLI GGNNCC 2 cut(s) 1170, 1424
BspQI GCTCTTC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 244
BsrGI TGTACA 2 cut(s) 324, 1133
BsrI ACTGG 2 cut(s) 700, 1424
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 6 cut(s) 63, 75, 218, 229, 1082, 1330
BssT1I CCWWGG 3 cut(s) 63, 1082, 1330
Bst2UI CCWGG 2 cut(s) 77, 220
Bst4CI ACNGT 2 cut(s) 1187, 1397
Bst6I CTCTTC 1 cut(s) 276
BstAPI GCANNNNNTGC 2 cut(s) 1007, 1412
BstAUI TGTACA 2 cut(s) 324, 1133
BstC8I GCNNGC 2 cut(s) 246, 342
BstDEI CTNAG 3 cut(s) 584, 636, 1430
BstF5I GGATG 2 cut(s) 493, 939
BstMAI GTCTC 1 cut(s) 394
BstMWI GCNNNNNNNGC 9 cut(s) 11, 14, 46, 241, 470, 985, 1007, 1412, 1450
BstNI CCWGG 2 cut(s) 77, 220
BstNSI RCATGY 4 cut(s) 503, 1081, 1342, 1453
BstSCI CCNGG 2 cut(s) 75, 218
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 904
BstV1I GCAGC 4 cut(s) 26, 220, 515, 921
Bsu36I CCTNAGG 1 cut(s) 636
BsuRI GGCC 4 cut(s) 203, 473, 995, 1478
BtrI CACGTC 2 cut(s) 388, 1037
BtsCI GGATG 2 cut(s) 493, 939
Cac8I GCNNGC 2 cut(s) 246, 342
CaiI CAGNNNCTG 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 6 cut(s) 79, 472, 721, 994, 1423, 1477
CseI GACGC 2 cut(s) 845, 1278
Csp6I GTAC 2 cut(s) 325, 1134
CviAII CATG 8 cut(s) 196, 328, 500, 1078, 1266, 1339, 1450, 1481
CviQI GTAC 2 cut(s) 325, 1134
DdeI CTNAG 3 cut(s) 584, 636, 1430
DraI TTTAAA 1 cut(s) 729
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 3 cut(s) 63, 1082, 1330
Eco32I GATATC 1 cut(s) 861
Eco47I GGWCC 3 cut(s) 79, 721, 1423
Eco57I CTGAAG 1 cut(s) 1010
Eco81I CCTNAGG 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 230
EcoO109I RGGNCCY 3 cut(s) 79, 994, 1423
EcoRII CCWGG 2 cut(s) 75, 218
EcoRV GATATC 1 cut(s) 861
EcoT14I CCWWGG 3 cut(s) 63, 1082, 1330
ErhI CCWWGG 3 cut(s) 63, 1082, 1330
Esp3I CGTCTC 1 cut(s) 394
FaeI CATG 8 cut(s) 199, 331, 503, 1081, 1269, 1342, 1453, 1484
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FatI CATG 8 cut(s) 195, 327, 499, 1077, 1265, 1338, 1449, 1480
FauI CCCGC 1 cut(s) 147
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 6 cut(s) 6, 15, 209, 504, 910, 1195
FokI GGATG 2 cut(s) 500, 926
Fsp4HI GCNGC 6 cut(s) 6, 15, 209, 504, 910, 1195
FspBI CTAG 5 cut(s) 129, 980, 1313, 1331, 1358
GluI GCNGC 6 cut(s) 6, 15, 209, 504, 910, 1195
GsuI CTGGAG 1 cut(s) 717
HaeIII GGCC 4 cut(s) 203, 473, 995, 1478
HapII CCGG 1 cut(s) 245
HgaI GACGC 2 cut(s) 845, 1278
Hin1II CATG 8 cut(s) 199, 331, 503, 1081, 1269, 1342, 1453, 1484
HindIII AAGCTT 2 cut(s) 586, 959
HinfI GANTC 5 cut(s) 51, 59, 1031, 1042, 1436
HpaII CCGG 1 cut(s) 245
HphI GGTGA 3 cut(s) 1009, 1135, 1247
Hpy166II GTNNAC 5 cut(s) 403, 683, 902, 1136, 1310
Hpy188I TCNGA 9 cut(s) 28, 179, 596, 835, 930, 955, 1041, 1225, 1431
Hpy188III TCNNGA 6 cut(s) 263, 391, 572, 638, 965, 1370
Hpy8I GTNNAC 5 cut(s) 403, 683, 902, 1136, 1310
Hpy99I CGWCG 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 1187, 1397
HpyCH4IV ACGT 2 cut(s) 387, 1036
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 14, 46, 241, 470, 985, 1007, 1412, 1450
HpyF3I CTNAG 3 cut(s) 584, 636, 1430
HpySE526I ACGT 2 cut(s) 387, 1036
Hsp92II CATG 8 cut(s) 199, 331, 503, 1081, 1269, 1342, 1453, 1484
KroI GCCGGC 1 cut(s) 244
KroNI GCCGGC 1 cut(s) 246
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 2 cut(s) 698, 763
Lsp1109I GCAGC 4 cut(s) 26, 220, 515, 921
LweI GCATC 4 cut(s) 17, 439, 750, 805
MaeI CTAG 5 cut(s) 129, 980, 1313, 1331, 1358
MaeII ACGT 2 cut(s) 387, 1036
MaeIII GTNAC 2 cut(s) 691, 1207
MboII GAAGA 6 cut(s) 217, 287, 290, 293, 406, 1309
MhlI GDGCHC 1 cut(s) 904
MlyI GAGTC 3 cut(s) 45, 68, 1445
MmeI TCCRAC 2 cut(s) 51, 766
MroNI GCCGGC 1 cut(s) 244
MseI TTAA 4 cut(s) 104, 728, 1067, 1362
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 2 cut(s) 17, 1063
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 77, 220
Mva1269I GAATGC 1 cut(s) 1129
MvaI CCWGG 2 cut(s) 77, 220
MwoI GCNNNNNNNGC 9 cut(s) 11, 14, 46, 241, 470, 985, 1007, 1412, 1450
NaeI GCCGGC 1 cut(s) 246
NgoMIV GCCGGC 1 cut(s) 244
NlaIII CATG 8 cut(s) 199, 331, 503, 1081, 1269, 1342, 1453, 1484
NlaIV GGNNCC 2 cut(s) 1170, 1424
NspI RCATGY 4 cut(s) 503, 1081, 1342, 1453
PciI ACATGT 1 cut(s) 1338
PciSI GCTCTTC 1 cut(s) 276
PctI GAATGC 1 cut(s) 1129
PdiI GCCGGC 1 cut(s) 246
PfeI GAWTC 2 cut(s) 1031, 1042
PkrI GCNGC 6 cut(s) 7, 16, 210, 505, 911, 1196
PleI GAGTC 3 cut(s) 45, 67, 1444
PpsI GAGTC 3 cut(s) 45, 67, 1444
PpuMI RGGWCCY 2 cut(s) 79, 1423
PscI ACATGT 1 cut(s) 1338
PshBI ATTAAT 1 cut(s) 104
Psp5II RGGWCCY 2 cut(s) 79, 1423
Psp6I CCWGG 2 cut(s) 75, 218
PspGI CCWGG 2 cut(s) 75, 218
PspN4I GGNNCC 2 cut(s) 1170, 1424
PspPI GGNCC 6 cut(s) 79, 472, 721, 994, 1423, 1477
PspPPI RGGWCCY 2 cut(s) 79, 1423
PstNI CAGNNNCTG 1 cut(s) 17
PvuII CAGCTG 2 cut(s) 17, 1063
RsaI GTAC 2 cut(s) 326, 1135
RsaNI GTAC 2 cut(s) 325, 1134
RseI CAYNNNNRTG 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 4 cut(s) 104, 728, 1067, 1362
SatI GCNGC 6 cut(s) 6, 15, 209, 504, 910, 1195
Sau96I GGNCC 6 cut(s) 79, 472, 721, 994, 1423, 1477
SchI GAGTC 3 cut(s) 45, 68, 1445
ScrFI CCNGG 2 cut(s) 77, 220
SduI GDGCHC 1 cut(s) 904
SfaNI GCATC 4 cut(s) 17, 439, 750, 805
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 3 cut(s) 79, 721, 1423
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
SsiI CCGC 3 cut(s) 5, 154, 1194
SspMI CTAG 5 cut(s) 129, 980, 1313, 1331, 1358
StyD4I CCNGG 2 cut(s) 75, 218
StyI CCWWGG 3 cut(s) 63, 1082, 1330
TaaI ACNGT 2 cut(s) 1187, 1397
TaiI ACGT 2 cut(s) 390, 1039
TaqI TCGA 7 cut(s) 45, 100, 185, 334, 392, 849, 1121
TatI WGTACW 2 cut(s) 324, 1133
TauI GCSGC 2 cut(s) 8, 1197
TfiI GAWTC 2 cut(s) 1031, 1042
Tru1I TTAA 4 cut(s) 104, 728, 1067, 1362
Tru9I TTAA 4 cut(s) 104, 728, 1067, 1362
TseI GCWGC 4 cut(s) 14, 208, 503, 909
TspDTI ATGAA 5 cut(s) 212, 286, 561, 984, 1254
TspGWI ACGGA 1 cut(s) 1109
VneI GTGCAC 1 cut(s) 900
VpaK11BI GGWCC 3 cut(s) 79, 721, 1423
VspI ATTAAT 1 cut(s) 104
XapI RAATTY 4 cut(s) 117, 578, 704, 914
XceI RCATGY 4 cut(s) 503, 1081, 1342, 1453
XmaJI CCTAGG 1 cut(s) 1330
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 5 cut(s) 129, 980, 1313, 1331, 1358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.