Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014752

Physical Location & Seq

Genomic Coordinates Forward (+)

26819526 .. 26821461

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36570.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAAGAGGTTCAGTAGATCAGACTCTTTGGGTACCTTGATCCCTAATTACCCACCAAAAGAGGAGAAGCATAATACAAGGAACAATGGTGGTTATAGCAAGGAGTTTCAGGCAATGTTGGATTCTTATGACCAAGAAGATTGCGGTGAAGAAATATCAGTGAAGAAAAGGCGCTTAAGCTTACATCAAGTCAAGGCCTTGGAGATAAGCTTTGAAGTTGAAAACAAGCTAGAGCCAGAGAGAAAGGTGAAACTAGCTGAGGAATTAGGCCTGGAACCAAGACAAGTAGCTATTTGGTTCCAAAACCGCAGAGCTCGTTGGAAGACAAAGCAGTTGGAAAGAGATTACAGTGTGCTGAAAGCTGATTATGATGCCTTGAAAGACAATTATGATAGCCTTGAGAGGCAGAACAAAGTTCTAGCTGAAAAGCTGAAAGAGCTAAAAGCAAAGCTGTGTAGAGATAATGCAGAAAGCGATCAGTCTGTTAAAGAAGAATCACCAATTTCAGTGTACAAGAGCAGTGTAATGGAGCAAAGTAGAGACCAGGATTTGAGTGACAATGGTGATAACGCAGGGCTGGATTCGTACAAGGATTTGAAATCCAAAGATGGGTCATCAGATAGTGAATCAAATGGAGCTGTGAAGGAAGAGAGCAATGGCAATGAGTCTTCTATGGGGTACAACGGTCATTCATTGTCTTCGAATTCCATGATGAACTGGTTTCAGCTATCAGATTCTAGGTCAGGTATTAAAGGGAATCATCAAACTCAGTTTGTGAGGATGGAGGAGCAGAGTTTGTTTAGCACAGAAGAGTCCTGCAATTTCTTTTCAGTTGATCAAGCTCCTAGTCTTCACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

287

Amino Acids

32.78

Weight (kDa)

5.3

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	56 - 108	2.8e-16	Homeodomain
HALZ	PF02183	110 - 151	5.3e-14	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014752)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36570 FvH4_5g36570
malus_domestica	MD08G1188500.v1.1 MD15G1374500.v1.1
prunus_persica	Prupe.1G523000_v2.0.a1
pyrus_communis	pycom08g16220 pycom15g33550
rosa_chinensis	RchiOBHm_Chr7g0242271
rosa_laevigata	RLG00000000903
rosa_multiflora	Rmu_sc0000429.1_g000028
rosa_roxburghii	Rroxscaffold_3G00222830
rosa_rugosa	Rorug07G0314400 Rorug07G0314500
rosa_samantha	Rh7BG439600 Rh7CG486400 Rh7DG454800
rosa_wichuraiana	Rw0G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	2 cut(s)	144, 307
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	703
AfaI	GTAC	4 cut(s)	34, 512, 587, 680
AfiI	CCNNNNNNNGG	1 cut(s)	609
AflII	CTTAAG	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	215, 221, 379, 598
AjnI	CCWGG	2 cut(s)	270, 543
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	534
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	2 cut(s)	195, 268
ApoI	RAATTY	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	174
AsuHPI	GGTGA	4 cut(s)	158, 259, 489, 575
AsuII	TTCGAA	1 cut(s)	701
BaeI	ACNNNNGTAYC	2 cut(s)	670, 703
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	316
BbsI	GAAGAC	4 cut(s)	329, 660, 690, 842
Bbv12I	GWGCWC	1 cut(s)	316
BbvCI	CCTCAGC	1 cut(s)	258
BccI	CCATC	2 cut(s)	602, 775
BciT130I	CCWGG	2 cut(s)	272, 545
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	1 cut(s)	534
BfaI	CTAG	5 cut(s)	230, 254, 419, 738, 846
BfoI	RGCGCY	1 cut(s)	175
BfrI	CTTAAG	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	272, 545
BmiI	GGNNCC	3 cut(s)	34, 276, 299
BmrFI	CCNGG	2 cut(s)	272, 545
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	4 cut(s)	329, 660, 690, 842
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse1I	ACTGG	2 cut(s)	722, 860
Bse3DI	GCAATG	3 cut(s)	120, 661, 667
BseBI	CCWGG	2 cut(s)	272, 545
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	786
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMI	GCAATG	3 cut(s)	120, 661, 667
BseMII	CTCAG	2 cut(s)	249, 782
BseNI	ACTGG	2 cut(s)	722, 860
BseRI	GAGGAG	2 cut(s)	77, 800
BshFI	GGCC	2 cut(s)	197, 270
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	1 cut(s)	534
BsnI	GGCC	2 cut(s)	197, 270
Bso31I	GGTCTC	1 cut(s)	534
Bsp119I	TTCGAA	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	4 cut(s)	17, 39, 475, 835
BspACI	CCGC	2 cut(s)	144, 307
BspANI	GGCC	2 cut(s)	197, 270
BspCNI	CTCAG	2 cut(s)	250, 781
BspLI	GGNNCC	3 cut(s)	34, 276, 299
BspPI	GGATC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	701
BspT107I	GGYRCC	1 cut(s)	32
BspTI	CTTAAG	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	534
BsrDI	GCAATG	3 cut(s)	120, 661, 667
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	722, 860
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	4 cut(s)	17, 39, 475, 835
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	272, 545
Bst4CI	ACNGT	2 cut(s)	350, 686
Bst6I	CTCTTC	2 cut(s)	642, 804
BstAFI	CTTAAG	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	701
BstDEI	CTNAG	2 cut(s)	258, 768
BstF5I	GGATG	1 cut(s)	786
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	4 cut(s)	20, 42, 478, 838
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	4 cut(s)	17, 39, 475, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	2 cut(s)	272, 545
BstSCI	CCNGG	2 cut(s)	270, 543
BstV2I	GAAGAC	4 cut(s)	329, 660, 690, 842
BsuRI	GGCC	2 cut(s)	197, 270
BtsCI	GGATG	1 cut(s)	786
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	5 cut(s)	165, 355, 513, 526, 853
CfoI	GCGC	1 cut(s)	174
Csp6I	GTAC	4 cut(s)	33, 511, 586, 679
CviAII	CATG	1 cut(s)	709
CviQI	GTAC	4 cut(s)	33, 511, 586, 679
DdeI	CTNAG	2 cut(s)	258, 768
DpnI	GATC	4 cut(s)	19, 41, 477, 837
DpnII	GATC	4 cut(s)	17, 39, 475, 835
Eam1104I	CTCTTC	2 cut(s)	642, 804
EarI	CTCTTC	2 cut(s)	642, 804
Ecl136II	GAGCTC	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	2 cut(s)	197, 270
Eco24I	GRGCYC	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	534
Eco53kI	GAGCTC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	2 cut(s)	270, 543
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	1 cut(s)	712
FaiI	YATR	7 cut(s)	72, 96, 129, 369, 390, 674, 710
FatI	CATG	1 cut(s)	708
FbaI	TGATCA	1 cut(s)	835
FokI	GGATG	1 cut(s)	793
FriOI	GRGCYC	1 cut(s)	316
FspBI	CTAG	5 cut(s)	230, 254, 419, 738, 846
GlaI	GCGC	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	197, 270
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	712
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HindIII	AAGCTT	2 cut(s)	178, 208
HinfI	GANTC	9 cut(s)	23, 122, 494, 581, 626, 665, 734, 757, 812
HphI	GGTGA	4 cut(s)	158, 259, 489, 575
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	3 cut(s)	22, 619, 733
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	1 cut(s)	637
HpyCH4III	ACNGT	2 cut(s)	350, 686
HpyCH4V	TGCA	2 cut(s)	467, 819
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	2 cut(s)	258, 768
Hsp92II	CATG	1 cut(s)	712
HspAI	GCGC	1 cut(s)	172
KpnI	GGTACC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	4 cut(s)	17, 39, 475, 835
LmnI	GCTCC	4 cut(s)	529, 635, 787, 847
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	5 cut(s)	230, 254, 419, 738, 846
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	4 cut(s)	19, 41, 477, 837
MboI	GATC	4 cut(s)	17, 39, 475, 835
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	6 cut(s)	46, 263, 385, 501, 703, 820
MlyI	GAGTC	3 cut(s)	17, 674, 821
MmeI	TCCRAC	3 cut(s)	99, 299, 315
MnlI	CCTC	5 cut(s)	55, 253, 396, 771, 778
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	176, 486, 750
MspCI	CTTAAG	1 cut(s)	175
MspR9I	CCNGG	2 cut(s)	272, 545
MvaI	CCWGG	2 cut(s)	272, 545
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeII	GATC	4 cut(s)	17, 39, 475, 835
NlaIII	CATG	1 cut(s)	712
NlaIV	GGNNCC	3 cut(s)	34, 276, 299
NmuCI	GTSAC	1 cut(s)	554
NspV	TTCGAA	1 cut(s)	701
PceI	AGGCCT	2 cut(s)	197, 270
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	6 cut(s)	122, 494, 581, 626, 734, 757
PleI	GAGTC	3 cut(s)	17, 673, 820
PpsI	GAGTC	3 cut(s)	17, 673, 820
Psp124BI	GAGCTC	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	270, 543
PspGI	CCWGG	2 cut(s)	270, 543
PspN4I	GGNNCC	3 cut(s)	34, 276, 299
RsaI	GTAC	4 cut(s)	34, 512, 587, 680
RsaNI	GTAC	4 cut(s)	33, 511, 586, 679
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	176, 486, 750
Sau3AI	GATC	4 cut(s)	17, 39, 475, 835
SchI	GAGTC	3 cut(s)	17, 674, 821
ScrFI	CCNGG	2 cut(s)	272, 545
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	1 cut(s)	361
SfuI	TTCGAA	1 cut(s)	701
SmlI	CTYRAG	2 cut(s)	175, 398
SmoI	CTYRAG	2 cut(s)	175, 398
Sse9I	AATT	6 cut(s)	46, 263, 385, 501, 703, 820
SseBI	AGGCCT	2 cut(s)	197, 270
SsiI	CCGC	2 cut(s)	144, 307
SspMI	CTAG	5 cut(s)	230, 254, 419, 738, 846
SstI	GAGCTC	1 cut(s)	316
StuI	AGGCCT	2 cut(s)	197, 270
StyD4I	CCNGG	2 cut(s)	270, 543
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	350, 686
TaqI	TCGA	1 cut(s)	701
TasI	AATT	6 cut(s)	46, 263, 385, 501, 703, 820
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	6 cut(s)	122, 494, 581, 626, 734, 757
Tru1I	TTAA	3 cut(s)	176, 486, 750
Tru9I	TTAA	3 cut(s)	176, 486, 750
TscAI	CASTG	5 cut(s)	165, 355, 513, 526, 860
TseFI	GTSAC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	3 cut(s)	17, 681, 728
TspRI	CASTG	5 cut(s)	165, 355, 513, 526, 860
Vha464I	CTTAAG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	5 cut(s)	230, 254, 419, 738, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.