RchiOBHm_Chr7g0242271

Homeobox-leucine zipper protein ATHB-6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014752
Physical Location & Seq
Forward (+)
68407381 .. 68409434
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21714

Sequence Viewer

Length: 876 bp
ATGAAGAGGTTCAGTAGATCAGATTCTCTGGATTCTCTGGGTACCTTGATCCCTAATTACCCACCAAAAGAGGAGGAGAAGCATAATAAAAAGAACAATGGTGGTTATAGCAAGGAATTCCAGACAATGTTGGATTCTTATGACCAAGAAGATTGCGGTGAAGAAATCCTAGTGAAGAAAAGGCGCTTAAGCTCACATCAAGTCAAGGCTTTGGAGATGAGCTTTGAGGTTGAAAACAAGCTAGAGCCAGAGAGGAAGGTGAAACTAGCTGCGGAATTAGGCTTGGAACCAAGACAAGTAGCTATTTGGTTCCAGAACCGCAGAGCTCGTTGGAAGACTAAGCAGTTGGAAAGAGATTACAGTGTGCTGAAAGCTGATTATGATGCCTTGAAGCACAATTATGATGGCCTTGATAGACAGAATAAAGCTCTAGCCGATCAGCTAAAAGATCTAAAAGCAAAGCTGTGTAGAGATAATACAGAAAGCGGTCAGTCTGTTAAAGAAGAATCACCAATTTCAGTGTACAAGAGCAGTGTAGTGGAGCAAAGTAGAGACCAGGATTTGAGTGACAATGGTGACAATGCAGGGCTGGATTTGTACAAGAATTTGAAATCCAAAGATGGGTCATCAGATAGTGATTCAAATGGAGCTATGAAGGAAGAGAGCAATGGCAATGAGTCTTCTCTGGGGTACAATGGTCATTCATTGTCTTCGAATTCGATGATGAACTGGTTTCAGGTATCAGATTCTAGGTCAGGTAATAAAGGGTATCATCATCAAGCTCAGTTTGGGAGGATGGAGGAGCAGAGTTTGTTTAGCACAGAGGAGTCCTGCAATTTCTTTTCAGTTGATCAAGCTCCTAGTCTTCACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ Homeobox

Protein Analysis

291

Amino Acids

33.2

Weight (kDa)

5.63

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 60 - 112 1.5e-17 Homeodomain
HALZ PF02183 114 - 155 1.6e-14 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014752)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36570 FvH4_5g36570
malus_domestica MD08G1188500.v1.1 MD15G1374500.v1.1
prunus_persica Prupe.1G523000_v2.0.a1
pyrus_communis pycom08g16220 pycom15g33550
rosa_chinensis RchiOBHm_Chr7g0242271
rosa_laevigata RLG00000000903
rosa_multiflora Rmu_sc0000429.1_g000028
rosa_roxburghii Rroxscaffold_3G00222830
rosa_rugosa Rorug07G0314400 Rorug07G0314500
rosa_samantha Rh7BG439600 Rh7CG486400 Rh7DG454800
rosa_wichuraiana Rw0G009480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 41
AciI CCGC 4 cut(s) 156, 272, 319, 486
AclWI GGATC 1 cut(s) 43
AcsI RAATTY 3 cut(s) 116, 604, 715
AfaI GTAC 4 cut(s) 43, 524, 599, 692
AfiI CCNNNNNNNGG 1 cut(s) 621
AflII CTTAAG 1 cut(s) 187
AgsI TTSAA 4 cut(s) 233, 391, 610, 642
AjnI CCWGG 1 cut(s) 555
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 1 cut(s) 43
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 3 cut(s) 116, 604, 715
Asp700I GAANNNNTTC 1 cut(s) 8
Asp718I GGTACC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 186
AsuHPI GGTGA 4 cut(s) 170, 271, 501, 587
AsuII TTCGAA 1 cut(s) 713
BaeI ACNNNNGTAYC 2 cut(s) 682, 715
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 328
BbsI GAAGAC 4 cut(s) 341, 672, 702, 857
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 1 cut(s) 256
BccI CCATC 3 cut(s) 398, 614, 790
BciT130I CCWGG 1 cut(s) 557
BclI TGATCA 1 cut(s) 850
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 6 cut(s) 170, 242, 266, 431, 750, 861
BfoI RGCGCY 1 cut(s) 187
BfrI CTTAAG 1 cut(s) 187
BglII AGATCT 1 cut(s) 448
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 557
BmiI GGNNCC 3 cut(s) 43, 288, 311
BmrFI CCNGG 1 cut(s) 557
BmsI GCATC 1 cut(s) 373
BpiI GAAGAC 4 cut(s) 341, 672, 702, 857
Bpu14I TTCGAA 1 cut(s) 713
BsaI GGTCTC 1 cut(s) 546
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse1I ACTGG 2 cut(s) 734, 875
Bse3DI GCAATG 2 cut(s) 673, 679
BseBI CCWGG 1 cut(s) 557
BseGI GGATG 1 cut(s) 801
BseLI CCNNNNNNNGG 1 cut(s) 621
BseMI GCAATG 2 cut(s) 673, 679
BseMII CTCAG 1 cut(s) 797
BseNI ACTGG 2 cut(s) 734, 875
BseRI GAGGAG 4 cut(s) 86, 89, 815, 839
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 1 cut(s) 408
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 621
BsmAI GTCTC 1 cut(s) 546
BsnI GGCC 1 cut(s) 408
Bso31I GGTCTC 1 cut(s) 546
Bsp119I TTCGAA 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 328
Bsp1407I TGTACA 2 cut(s) 522, 597
Bsp143I GATC 5 cut(s) 17, 48, 436, 448, 850
BspACI CCGC 4 cut(s) 156, 272, 319, 486
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 1 cut(s) 796
BspLI GGNNCC 3 cut(s) 43, 288, 311
BspPI GGATC 1 cut(s) 43
BspT104I TTCGAA 1 cut(s) 713
BspT107I GGYRCC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 546
BsrDI GCAATG 2 cut(s) 673, 679
BsrGI TGTACA 2 cut(s) 522, 597
BsrI ACTGG 2 cut(s) 734, 875
BssMI GATC 5 cut(s) 17, 48, 436, 448, 850
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 654
BstAFI CTTAAG 1 cut(s) 187
BstAUI TGTACA 2 cut(s) 522, 597
BstBI TTCGAA 1 cut(s) 713
BstDEI CTNAG 2 cut(s) 339, 783
BstF5I GGATG 1 cut(s) 801
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 5 cut(s) 20, 51, 439, 451, 853
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 5 cut(s) 17, 48, 436, 448, 850
BstNI CCWGG 1 cut(s) 557
BstSCI CCNGG 1 cut(s) 555
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 4 cut(s) 341, 672, 702, 857
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 1 cut(s) 408
BtsCI GGATG 1 cut(s) 801
BtsI GCAGTG 1 cut(s) 538
BtsIMutI CAGTG 4 cut(s) 367, 525, 538, 868
CfoI GCGC 1 cut(s) 186
Csp6I GTAC 4 cut(s) 42, 523, 598, 691
CviQI GTAC 4 cut(s) 42, 523, 598, 691
DdeI CTNAG 2 cut(s) 339, 783
DpnI GATC 5 cut(s) 19, 50, 438, 450, 852
DpnII GATC 5 cut(s) 17, 48, 436, 448, 850
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Ecl136II GAGCTC 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 546
Eco53kI GAGCTC 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 326
EcoRI GAATTC 2 cut(s) 116, 715
EcoRII CCWGG 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 328
FaiI YATR 6 cut(s) 84, 108, 141, 381, 402, 653
FbaI TGATCA 1 cut(s) 850
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 808
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 6 cut(s) 170, 242, 266, 431, 750, 861
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 1 cut(s) 408
HhaI GCGC 1 cut(s) 186
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 8 cut(s) 23, 32, 134, 506, 638, 677, 746, 827
HphI GGTGA 4 cut(s) 170, 271, 501, 587
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 3 cut(s) 22, 631, 745
Hpy188III TCNNGA 3 cut(s) 29, 121, 313
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 250, 649
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4V TGCA 2 cut(s) 584, 834
HpyF3I CTNAG 2 cut(s) 339, 783
HspAI GCGC 1 cut(s) 184
KpnI GGTACC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 5 cut(s) 17, 48, 436, 448, 850
LmnI GCTCC 4 cut(s) 541, 647, 802, 862
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 373
MaeI CTAG 6 cut(s) 170, 242, 266, 431, 750, 861
MaeIII GTNAC 2 cut(s) 566, 575
MalI GATC 5 cut(s) 19, 50, 438, 450, 852
MboI GATC 5 cut(s) 17, 48, 436, 448, 850
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 8 cut(s) 55, 116, 275, 397, 513, 604, 715, 835
MlyI GAGTC 2 cut(s) 686, 836
MmeI TCCRAC 3 cut(s) 111, 311, 327
MnlI CCTC 7 cut(s) 64, 67, 220, 246, 786, 793, 817
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 188, 498
MslI CAYNNNNRTG 1 cut(s) 399
MspCI CTTAAG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 557
MvaI CCWGG 1 cut(s) 557
NdeII GATC 5 cut(s) 17, 48, 436, 448, 850
NlaIV GGNNCC 3 cut(s) 43, 288, 311
NmuCI GTSAC 2 cut(s) 566, 575
NspV TTCGAA 1 cut(s) 713
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 6 cut(s) 23, 32, 134, 506, 638, 746
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 2 cut(s) 685, 835
PpsI GAGTC 2 cut(s) 685, 835
Psp124BI GAGCTC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 555
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 3 cut(s) 43, 288, 311
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 4 cut(s) 43, 524, 599, 692
RsaNI GTAC 4 cut(s) 42, 523, 598, 691
RseI CAYNNNNRTG 1 cut(s) 399
SacI GAGCTC 1 cut(s) 328
SaqAI TTAA 2 cut(s) 188, 498
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 5 cut(s) 17, 48, 436, 448, 850
SchI GAGTC 2 cut(s) 686, 836
ScrFI CCNGG 1 cut(s) 557
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 1 cut(s) 373
SfuI TTCGAA 1 cut(s) 713
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 8 cut(s) 55, 116, 275, 397, 513, 604, 715, 835
SsiI CCGC 4 cut(s) 156, 272, 319, 486
SspMI CTAG 6 cut(s) 170, 242, 266, 431, 750, 861
SstI GAGCTC 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 555
TaaI ACNGT 1 cut(s) 362
TaqI TCGA 2 cut(s) 713, 719
TasI AATT 8 cut(s) 55, 116, 275, 397, 513, 604, 715, 835
TatI WGTACW 2 cut(s) 522, 597
TfiI GAWTC 6 cut(s) 23, 32, 134, 506, 638, 746
Tru1I TTAA 2 cut(s) 188, 498
Tru9I TTAA 2 cut(s) 188, 498
TscAI CASTG 4 cut(s) 367, 525, 538, 875
TseFI GTSAC 2 cut(s) 566, 575
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 2 cut(s) 566, 575
TspDTI ATGAA 4 cut(s) 17, 668, 693, 740
TspRI CASTG 4 cut(s) 367, 525, 538, 875
Vha464I CTTAAG 1 cut(s) 187
XapI RAATTY 3 cut(s) 116, 604, 715
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 6 cut(s) 170, 242, 266, 431, 750, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.