MD15G1374500.v1.1

Homeobox-leucine zipper protein ATHB-6-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
45816488 .. 45818241
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1374500.v1.1.491

Sequence Viewer

Length: 825 bp
ATGAAGAGGTTCAGCAGCTCAGATTCATTGGGTGCTTTGGTCTCCAATTTCCCATCAAAAGAGGGGGGGAAGCTTGCAAAGGACAACTATGGTTATAGCAAGGAGTTGCAGGCAATGTTAGATTCGTTAAACCAAGAAGATGTTGGGGAAGAAATGTCAGGGAAGAAAAGGCGATTGAATTCGGAGCAAGTCAAGGCATTGGAGAGAAACTTTGAGGTTGAGAACAAGTTAGAGCCAGAGAGGAAGGTCAAACTGGCTGAGGAATTAGGCCTGCAACCGAGACAAGTGGCAGTTTGGTTTCAAAACCGCCGCGCACGGTGGAAGACTAAGCAGTTGGAAAGAGACTACAGCATCCTCAAAACCGACTATGATGGTTTAAAGCTCAACTTTGCTAGCCTTGAGAGACAGAATAAAGCTCTTGCTGAAAAGCTAAGGCAGTTAAAAGCAAAGCTGTGCGGAGAGACTGCAGAGAGGAACGATTCTGTGAAGGAAGAATCACCAATTTCAATGTGCAAAAGCAGTGAAAATTTAGAGGTGGATTTAATCAAGAACTTGAAATTCAAAGATGGCTCATCAGATAGTGATTCAAATGGCGTTCTTATGAAGGAAGAGAGCAATGGAAATTCATCTCTTGGATTTAATAATAATAGAAATTCAATTTCTTCAAATTCCATGGTGAATTGGTTTCAATTATCAGACTCCAGATCAGTGGGTGGAAAAGGGTTTCACGCTCAGACTGTGAGGATGGAAGAGCAGAGTTTTTTCAGCACAGATGAGTCCTGCAATTTCTTTTCAGTTGATCAAGCTCCAAGTCTTCATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

275

Amino Acids

31.09

Weight (kDa)

6.79

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 55 - 108 4.1e-17 Homeodomain
HALZ PF02183 110 - 151 1.2e-12 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014752)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 312
AciI CCGC 3 cut(s) 307, 310, 456
AcsI RAATTY 6 cut(s) 178, 526, 557, 622, 652, 667
AgsI TTSAA 9 cut(s) 178, 302, 507, 556, 562, 588, 657, 666, 689
AluBI AGCT 7 cut(s) 18, 73, 382, 416, 430, 451, 806
AluI AGCT 7 cut(s) 18, 73, 382, 416, 430, 451, 806
Alw26I GTCTC 5 cut(s) 46, 274, 336, 397, 455
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 6 cut(s) 178, 526, 557, 622, 652, 667
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 489, 688
AsuNHI GCTAGC 1 cut(s) 392
BbsI GAAGAC 2 cut(s) 329, 806
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 27
BccI CCATC 4 cut(s) 61, 365, 560, 739
BclI TGATCA 1 cut(s) 799
BcoDI GTCTC 5 cut(s) 46, 274, 336, 397, 455
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 2 cut(s) 346, 465
BisI GCNGC 2 cut(s) 16, 310
BlsI GCNGC 2 cut(s) 17, 311
BmsI GCATC 1 cut(s) 360
BmtI GCTAGC 1 cut(s) 396
BpiI GAAGAC 2 cut(s) 329, 806
BpmI CTGGAG 1 cut(s) 685
Bpu10I CCTNAGC 2 cut(s) 258, 431
BpuEI CTTGAG 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 672
Bse1I ACTGG 1 cut(s) 258
Bse3DI GCAATG 2 cut(s) 120, 622
BseDI CCNNGG 1 cut(s) 672
BseGI GGATG 2 cut(s) 351, 750
BseMI GCAATG 2 cut(s) 120, 622
BseMII CTCAG 3 cut(s) 33, 249, 746
BseNI ACTGG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 1 cut(s) 270
BsmAI GTCTC 5 cut(s) 46, 274, 336, 397, 455
BsnI GGCC 1 cut(s) 270
Bso31I GGTCTC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 704, 799
Bsp19I CCATGG 1 cut(s) 672
BspACI CCGC 3 cut(s) 307, 310, 456
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 3 cut(s) 32, 250, 745
BspFNI CGCG 1 cut(s) 312
BspMAI CTGCAG 1 cut(s) 469
BspOI GCTAGC 1 cut(s) 396
BspQI GCTCTTC 1 cut(s) 744
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 2 cut(s) 120, 622
BsrI ACTGG 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 672
BssMI GATC 2 cut(s) 704, 799
BssT1I CCWWGG 1 cut(s) 672
Bst4CI ACNGT 2 cut(s) 318, 739
Bst6I CTCTTC 2 cut(s) 603, 744
BstC8I GCNNGC 4 cut(s) 75, 111, 272, 394
BstDEI CTNAG 5 cut(s) 19, 258, 327, 431, 732
BstDSI CCRYGG 1 cut(s) 672
BstF5I GGATG 2 cut(s) 351, 750
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 2 cut(s) 707, 802
BstMAI GTCTC 5 cut(s) 46, 274, 336, 397, 455
BstMBI GATC 2 cut(s) 704, 799
BstSFI CTRYAG 2 cut(s) 346, 465
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 2 cut(s) 329, 806
BstXI CCANNNNNNTGG 1 cut(s) 709
BsuRI GGCC 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 672
BtsCI GGATG 2 cut(s) 351, 750
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 2 cut(s) 526, 714
Cac8I GCNNGC 4 cut(s) 75, 111, 272, 394
CfoI GCGC 1 cut(s) 314
CviAII CATG 1 cut(s) 673
DdeI CTNAG 5 cut(s) 19, 258, 327, 431, 732
DpnI GATC 2 cut(s) 706, 801
DpnII GATC 2 cut(s) 704, 799
DraI TTTAAA 1 cut(s) 378
Eam1104I CTCTTC 2 cut(s) 603, 744
EarI CTCTTC 2 cut(s) 603, 744
Eco130I CCWWGG 1 cut(s) 672
Eco147I AGGCCT 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 1 cut(s) 676
FaiI YATR 5 cut(s) 90, 96, 369, 602, 674
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 1 cut(s) 672
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 2 cut(s) 16, 310
FokI GGATG 2 cut(s) 338, 757
Fsp4HI GCNGC 2 cut(s) 16, 310
FspBI CTAG 1 cut(s) 393
GlaI GCGC 1 cut(s) 313
GluI GCNGC 2 cut(s) 16, 310
GsuI CTGGAG 1 cut(s) 685
HaeIII GGCC 1 cut(s) 270
HhaI GCGC 1 cut(s) 314
Hin1II CATG 1 cut(s) 676
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 7 cut(s) 23, 122, 479, 494, 584, 698, 776
HphI GGTGA 2 cut(s) 489, 688
Hpy188I TCNGA 5 cut(s) 22, 184, 577, 697, 735
Hpy188III TCNNGA 2 cut(s) 547, 702
HpyAV CCTTC 3 cut(s) 238, 481, 598
HpyCH4III ACNGT 2 cut(s) 318, 739
HpyCH4V TGCA 6 cut(s) 77, 109, 274, 467, 513, 783
HpyF3I CTNAG 5 cut(s) 19, 258, 327, 431, 732
Hsp92II CATG 1 cut(s) 676
HspAI GCGC 1 cut(s) 312
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 2 cut(s) 704, 799
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 2 cut(s) 184, 811
LpnPI CCDG 7 cut(s) 95, 144, 239, 249, 284, 715, 793
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 393
MalI GATC 2 cut(s) 706, 801
MboI GATC 2 cut(s) 704, 799
MlyI GAGTC 2 cut(s) 692, 785
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 8 cut(s) 55, 208, 234, 253, 365, 465, 526, 735
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 5 cut(s) 128, 377, 440, 542, 639
MvnI CGCG 1 cut(s) 312
NcoI CCATGG 1 cut(s) 672
NdeII GATC 2 cut(s) 704, 799
NheI GCTAGC 1 cut(s) 392
NlaIII CATG 1 cut(s) 676
PceI AGGCCT 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 5 cut(s) 23, 122, 479, 494, 584
PkrI GCNGC 2 cut(s) 17, 311
PleI GAGTC 2 cut(s) 692, 784
PpsI GAGTC 2 cut(s) 692, 784
PstI CTGCAG 1 cut(s) 469
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 5 cut(s) 128, 377, 440, 542, 639
SatI GCNGC 2 cut(s) 16, 310
Sau3AI GATC 2 cut(s) 704, 799
SchI GAGTC 2 cut(s) 692, 785
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 2 cut(s) 346, 465
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SseBI AGGCCT 1 cut(s) 270
SsiI CCGC 3 cut(s) 307, 310, 456
SspMI CTAG 1 cut(s) 393
StuI AGGCCT 1 cut(s) 270
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 2 cut(s) 318, 739
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 5 cut(s) 23, 122, 479, 494, 584
Tru1I TTAA 5 cut(s) 128, 377, 440, 542, 639
Tru9I TTAA 5 cut(s) 128, 377, 440, 542, 639
TscAI CASTG 2 cut(s) 526, 714
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 5 cut(s) 15, 17, 615, 617, 806
TspRI CASTG 2 cut(s) 526, 714
XapI RAATTY 6 cut(s) 178, 526, 557, 622, 652, 667
XcmI CCANNNNNNNNNTGG 2 cut(s) 140, 816
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.