Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0014752

Physical Location & Seq

Genomic Coordinates Reverse (-)

23799815 .. 23801506

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1188500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAAGAGGTTCGGCAGCTCAGAGTCATTGGGTGCTTTGGTCTCCAATTTCCCATCAAAAGAGGAGGGAAAGCTTGCAAAGGGCAAATATGGTTACAGCAAGGAGTTTCAGGCAATGTTAGATTCTTTAGAACAAGAAGATATTGGGGAAGAAATGTCAGGGAAGAAAAGGCGGTTGAGCTCGGAGCAGGTCAAGGCCTTGGAGAGAAGCTTTGAGGTTGAGAACAAGTTAGAGCCAGAGAGGAAGGTCAAACTGGCTGAGGAATTAGGCCTGCAACCGAGACAAGTGGCGATTTGGTTTCAAAACCGTCGCGCACGGTGGAAGACTAAGCAATTGGAAAGAGACTACAGCGCCCTCAAAGCTGACTATGATGGTTTAAAGCACAACTATGATAGCCTTGAGAGACAGAATAAAGCTCTTGCTGAAAAGCTAAGTCAGTTAAAGGCGAAGCTGTGCACAGAAGGTGCAGAGAGCAACGGCTCCGCGAAAGAAGAATCACCAATTTCAACGTGCAAAAGCAGTGAAAATATTGAGGTGGATTTGTTCAAGAACTTGAAGACCAAAGATGGTTCATCAGATAGTGATTCAAATGAAGTTCTTATGAAGGAAGAGAGCAATGGAAATTCATCTCTTGGATATAATAATAATAATAATAATAATAATAATTCAATTTCTTCAAATTCCATGGTGAATTGGTTTCAATTATCTGAGTCCAGATCAGTAGCTGCAGGAAAAGGGTTTCAAGGCCAGCTTGTGAGGATGGAAGAGCAGAGTCTTTTCACCACAGATGATTCCTGCAATTTCTTTTCAGTCGATCAAGCTCCTAGTCTTCATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

280

Amino Acids

31.43

Weight (kDa)

5.57

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	55 - 108	7.6e-18	Homeodomain
HALZ	PF02183	110 - 151	9e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014752)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36570 FvH4_5g36570
malus_domestica	MD08G1188500.v1.1 MD15G1374500.v1.1
prunus_persica	Prupe.1G523000_v2.0.a1
pyrus_communis	pycom08g16220 pycom15g33550
rosa_chinensis	RchiOBHm_Chr7g0242271
rosa_laevigata	RLG00000000903
rosa_multiflora	Rmu_sc0000429.1_g000028
rosa_roxburghii	Rroxscaffold_3G00222830
rosa_rugosa	Rorug07G0314400 Rorug07G0314500
rosa_samantha	Rh7BG439600 Rh7CG486400 Rh7DG454800
rosa_wichuraiana	Rw0G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	178
AccII	CGCG	2 cut(s)	312, 485
AciI	CCGC	2 cut(s)	172, 483
AcsI	RAATTY	2 cut(s)	622, 679
AgsI	TTSAA	9 cut(s)	302, 507, 547, 556, 588, 669, 678, 701, 743
Alw21I	GWGCWC	2 cut(s)	182, 458
Alw26I	GTCTC	4 cut(s)	46, 274, 336, 397
Alw44I	GTGCAC	1 cut(s)	454
AlwNI	CAGNNNCTG	1 cut(s)	725
AoxI	GGCC	3 cut(s)	195, 268, 745
ApaLI	GTGCAC	1 cut(s)	454
ApeKI	GCWGC	2 cut(s)	15, 725
ApoI	RAATTY	2 cut(s)	622, 679
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	314, 353
AsuHPI	GGTGA	3 cut(s)	489, 700, 772
BaeGI	GKGCMC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	182
BbsI	GAAGAC	3 cut(s)	329, 563, 821
Bbv12I	GWGCWC	2 cut(s)	182, 458
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	27, 712
BccI	CCATC	4 cut(s)	61, 365, 560, 754
BceAI	ACGGC	1 cut(s)	493
BcoDI	GTCTC	4 cut(s)	46, 274, 336, 397
BfaI	CTAG	1 cut(s)	825
BfmI	CTRYAG	2 cut(s)	346, 726
BfoI	RGCGCY	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	2 cut(s)	16, 726
BlsI	GCNGC	2 cut(s)	17, 727
BmiI	GGNNCC	1 cut(s)	481
BpiI	GAAGAC	3 cut(s)	329, 563, 821
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	198, 684
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	2 cut(s)	120, 622
BseDI	CCNNGG	2 cut(s)	198, 684
BseGI	GGATG	1 cut(s)	765
BseMI	GCAATG	2 cut(s)	120, 622
BseMII	CTCAG	3 cut(s)	33, 249, 699
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	27, 712
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	2 cut(s)	312, 485
BshFI	GGCC	3 cut(s)	197, 270, 747
BsiHKAI	GWGCWC	2 cut(s)	182, 458
BsmAI	GTCTC	4 cut(s)	46, 274, 336, 397
BsnI	GGCC	3 cut(s)	197, 270, 747
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	2 cut(s)	182, 458
Bsp143I	GATC	2 cut(s)	716, 814
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	2 cut(s)	172, 483
BspANI	GGCC	3 cut(s)	197, 270, 747
BspCNI	CTCAG	3 cut(s)	32, 250, 700
BspFNI	CGCG	2 cut(s)	312, 485
BspLI	GGNNCC	1 cut(s)	481
BspMAI	CTGCAG	1 cut(s)	730
BspMI	ACCTGC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	759
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	120, 622
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	198, 684
BssMI	GATC	2 cut(s)	716, 814
BssT1I	CCWWGG	2 cut(s)	198, 684
Bst4CI	ACNGT	2 cut(s)	308, 318
Bst6I	CTCTTC	2 cut(s)	603, 759
BstC8I	GCNNGC	3 cut(s)	75, 272, 749
BstDEI	CTNAG	5 cut(s)	19, 258, 327, 431, 708
BstDSI	CCRYGG	1 cut(s)	684
BstF5I	GGATG	1 cut(s)	765
BstFNI	CGCG	2 cut(s)	312, 485
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	314, 353
BstKTI	GATC	2 cut(s)	719, 817
BstMAI	GTCTC	4 cut(s)	46, 274, 336, 397
BstMBI	GATC	2 cut(s)	716, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstSFI	CTRYAG	2 cut(s)	346, 726
BstSLI	GKGCMC	1 cut(s)	458
BstUI	CGCG	2 cut(s)	312, 485
BstV1I	GCAGC	2 cut(s)	27, 712
BstV2I	GAAGAC	3 cut(s)	329, 563, 821
BsuRI	GGCC	3 cut(s)	197, 270, 747
BtgI	CCRYGG	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	765
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	526
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	3 cut(s)	75, 272, 749
CaiI	CAGNNNCTG	1 cut(s)	725
CfoI	GCGC	2 cut(s)	314, 353
CviAII	CATG	1 cut(s)	685
DdeI	CTNAG	5 cut(s)	19, 258, 327, 431, 708
DpnI	GATC	2 cut(s)	718, 816
DpnII	GATC	2 cut(s)	716, 814
DraI	TTTAAA	1 cut(s)	378
Eam1104I	CTCTTC	2 cut(s)	603, 759
EarI	CTCTTC	2 cut(s)	603, 759
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	198, 684
Eco147I	AGGCCT	2 cut(s)	197, 270
Eco24I	GRGCYC	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	180
EcoT14I	CCWWGG	2 cut(s)	198, 684
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	2 cut(s)	198, 684
FaeI	CATG	1 cut(s)	688
FaiI	YATR	6 cut(s)	90, 369, 390, 602, 639, 686
FalI	AAGNNNNNCTT	2 cut(s)	735, 767
FatI	CATG	1 cut(s)	684
Fnu4HI	GCNGC	2 cut(s)	16, 726
FokI	GGATG	1 cut(s)	772
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	16, 726
FspBI	CTAG	1 cut(s)	825
GlaI	GCGC	2 cut(s)	313, 352
GluI	GCNGC	2 cut(s)	16, 726
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	3 cut(s)	197, 270, 747
HhaI	GCGC	2 cut(s)	314, 353
Hin1II	CATG	1 cut(s)	688
Hin6I	GCGC	2 cut(s)	312, 351
HinP1I	GCGC	2 cut(s)	312, 351
HindIII	AAGCTT	2 cut(s)	71, 208
HinfI	GANTC	7 cut(s)	23, 122, 494, 584, 710, 772, 791
HphI	GGTGA	3 cut(s)	489, 700, 772
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	4 cut(s)	22, 184, 577, 709
Hpy188III	TCNNGA	2 cut(s)	547, 714
Hpy8I	GTNNAC	1 cut(s)	456
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	3 cut(s)	238, 455, 598
HpyCH4III	ACNGT	2 cut(s)	308, 318
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	7 cut(s)	77, 274, 456, 467, 513, 728, 798
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	5 cut(s)	19, 258, 327, 431, 708
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	1 cut(s)	688
HspAI	GCGC	2 cut(s)	312, 351
Kzo9I	GATC	2 cut(s)	716, 814
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	3 cut(s)	184, 485, 826
Lsp1109I	GCAGC	2 cut(s)	27, 712
MaeI	CTAG	1 cut(s)	825
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	718, 816
MboI	GATC	2 cut(s)	716, 814
MfeI	CAATTG	1 cut(s)	332
MhlI	GDGCHC	2 cut(s)	182, 458
MlyI	GAGTC	3 cut(s)	32, 719, 781
MnlI	CCTC	8 cut(s)	55, 58, 208, 234, 253, 365, 526, 750
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	377, 440
MslI	CAYNNNNRTG	1 cut(s)	387
MunI	CAATTG	1 cut(s)	332
MvnI	CGCG	2 cut(s)	312, 485
MwoI	GCNNNNNNNGC	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	684
NdeII	GATC	2 cut(s)	716, 814
NlaIII	CATG	1 cut(s)	688
NlaIV	GGNNCC	1 cut(s)	481
PceI	AGGCCT	2 cut(s)	197, 270
PciSI	GCTCTTC	1 cut(s)	759
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	4 cut(s)	122, 494, 584, 791
PkrI	GCNGC	2 cut(s)	17, 727
PleI	GAGTC	3 cut(s)	31, 718, 780
PpsI	GAGTC	3 cut(s)	31, 718, 780
Psp124BI	GAGCTC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	481
PstI	CTGCAG	1 cut(s)	730
PstNI	CAGNNNCTG	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	2 cut(s)	377, 440
SatI	GCNGC	2 cut(s)	16, 726
Sau3AI	GATC	2 cut(s)	716, 814
SchI	GAGTC	3 cut(s)	32, 719, 781
SduI	GDGCHC	2 cut(s)	182, 458
SfcI	CTRYAG	2 cut(s)	346, 726
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SseBI	AGGCCT	2 cut(s)	197, 270
SsiI	CCGC	2 cut(s)	172, 483
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	1 cut(s)	825
SstI	GAGCTC	1 cut(s)	182
StuI	AGGCCT	2 cut(s)	197, 270
StyI	CCWWGG	2 cut(s)	198, 684
TaaI	ACNGT	2 cut(s)	308, 318
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	1 cut(s)	813
TfiI	GAWTC	4 cut(s)	122, 494, 584, 791
Tru1I	TTAA	2 cut(s)	377, 440
Tru9I	TTAA	2 cut(s)	377, 440
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	2 cut(s)	15, 725
TspDTI	ATGAA	6 cut(s)	17, 561, 606, 615, 617, 821
TspRI	CASTG	1 cut(s)	526
VneI	GTGCAC	1 cut(s)	454
XapI	RAATTY	2 cut(s)	622, 679
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.