Prupe.1G523000_v2.0.a1

Homeobox-leucine zipper protein ATHB-6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014752
Physical Location & Seq
Reverse (-)
42838769 .. 42840584
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G523000.1

Sequence Viewer

Length: 882 bp
ATGAAGAGGTTCAGCAGCAGCTCAGATTCATTGGGTGTGTTGGTGTCCAATTTCCCACCAAAAGAGGAGGAGAAGCATGGAAAGGACAACTATGGTTATAGCAAGGAGTTTCAGGCAATGTTAGATTCTTTAGACCAAGAAGACTGTGGGGAAGAAATGACAGGGAAGAAAAGGCGCTTAAGCTCAGAGCAGGTCAAGGCCTTGGAGAGAAACTTTGAGGTTGAGAACAAGTTAGAGCCAGAGAGGAAGGCCAAATTAGCTGAGGAGTTAGGCCTGCAACCAAGACAAGTAGCTATTTGGTTCCAAAACCGCCGCGCCCGGTGGAAGACTAAGCAATTGGAGAGAGACTACGGCATTCTCAAAGCTAATTATGATGGCTTAAAGCTCAACTTTGATAGTCTTGAGAGGCAGAATAAAGCTCTGGCTGAAAAGCTAAGGCACTTAAAAGCAAAGCTGTGCAGAGATACTGCAGAAAGCAATGGTTCAGCTAAAGAAGAATCACCAATTTCAATGTGCAAGAGCAGTATCATGGAGCAAAGCAGACACCAAGATTTCAGTGACAATGGAGACAATGCAGAGGTGAATTTGTTTAAGAACTTGAAATCCAAAGATGGATCATCAGATAGTGACTCAAATGGAGTTATGAAGGAAGAAAGCAATGGAAATTCTTCTCTTGGCTATAACAATGGCCATTCATCATTGTCTTCAAATTCAATGGTAAACTGGTTTCAATTATCAGACTCTAGATCAGTAGCTGGTAAAGGGTTCCAGACTCAGCTTGTGAGGATGGAAGAGCAAAGTTTGTTTAGCACAGAAGAATCCTGTAATTTCTTCTCAGTTGATCAAGCTCCCACTCTCCATTGGTACTCTGCTGAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ Homeobox

Protein Analysis

294

Amino Acids

33.29

Weight (kDa)

5.73

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014752)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36570 FvH4_5g36570
malus_domestica MD08G1188500.v1.1 MD15G1374500.v1.1
prunus_persica Prupe.1G523000_v2.0.a1
pyrus_communis pycom08g16220 pycom15g33550
rosa_chinensis RchiOBHm_Chr7g0242271
rosa_laevigata RLG00000000903
rosa_multiflora Rmu_sc0000429.1_g000028
rosa_roxburghii Rroxscaffold_3G00222830
rosa_rugosa Rorug07G0314400 Rorug07G0314500
rosa_samantha Rh7BG439600 Rh7CG486400 Rh7DG454800
rosa_wichuraiana Rw0G009480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AccII CGCG 1 cut(s) 315
AciI CCGC 2 cut(s) 310, 313
AclWI GGATC 1 cut(s) 622
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 3 cut(s) 583, 664, 709
AfaI GTAC 1 cut(s) 866
AflII CTTAAG 1 cut(s) 178
AgsI TTSAA 5 cut(s) 510, 601, 708, 714, 731
AloI GAACNNNNNNTCC 2 cut(s) 587, 619
Alw26I GTCTC 2 cut(s) 339, 561
AlwI GGATC 1 cut(s) 622
AlwNI CAGNNNCTG 1 cut(s) 755
AoxI GGCC 4 cut(s) 198, 249, 271, 688
ApeKI GCWGC 2 cut(s) 15, 18
ApoI RAATTY 3 cut(s) 583, 664, 709
Asp700I GAANNNNTTC 2 cut(s) 8, 667
AspLEI GCGC 2 cut(s) 177, 317
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 492, 592
BalI TGGCCA 1 cut(s) 690
BbsI GAAGAC 3 cut(s) 147, 332, 696
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 27, 30
BccI CCATC 3 cut(s) 368, 605, 781
BceAI ACGGC 1 cut(s) 367
BclI TGATCA 1 cut(s) 841
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 339, 561
BfaI CTAG 1 cut(s) 744
BfmI CTRYAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 178
BfrI CTTAAG 1 cut(s) 178
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 3 cut(s) 16, 19, 313
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 3 cut(s) 17, 20, 314
Bme1390I CCNGG 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 302, 767
BmrFI CCNGG 1 cut(s) 319
BpiI GAAGAC 3 cut(s) 147, 332, 696
Bpu10I CCTNAGC 2 cut(s) 261, 434
Bpu1102I GCTNAGC 1 cut(s) 873
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 728
Bse3DI GCAATG 3 cut(s) 123, 484, 664
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 792
BseMI GCAATG 3 cut(s) 123, 484, 664
BseMII CTCAG 6 cut(s) 36, 198, 252, 788, 849, 864
BseNI ACTGG 1 cut(s) 728
BseRI GAGGAG 3 cut(s) 80, 83, 278
BseXI GCAGC 2 cut(s) 27, 30
BsgI GTGCAG 1 cut(s) 478
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 4 cut(s) 200, 251, 273, 690
BsiSI CCGG 1 cut(s) 319
BsmAI GTCTC 2 cut(s) 339, 561
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 4 cut(s) 200, 251, 273, 690
Bsp143I GATC 3 cut(s) 614, 746, 841
Bsp1720I GCTNAGC 1 cut(s) 873
BspACI CCGC 2 cut(s) 310, 313
BspANI GGCC 4 cut(s) 200, 251, 273, 690
BspCNI CTCAG 6 cut(s) 35, 197, 253, 787, 848, 865
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 302, 767
BspMAI CTGCAG 1 cut(s) 472
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 622
BspQI GCTCTTC 1 cut(s) 786
BspTI CTTAAG 1 cut(s) 178
BsrDI GCAATG 3 cut(s) 123, 484, 664
BsrI ACTGG 1 cut(s) 728
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 3 cut(s) 614, 746, 841
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 786
BstAFI CTTAAG 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 8 cut(s) 22, 184, 261, 330, 434, 774, 835, 873
BstF5I GGATG 1 cut(s) 792
BstFNI CGCG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 2 cut(s) 177, 317
BstKTI GATC 3 cut(s) 617, 749, 844
BstMAI GTCTC 2 cut(s) 339, 561
BstMBI GATC 3 cut(s) 614, 746, 841
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 468
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 27, 30
BstV2I GAAGAC 3 cut(s) 147, 332, 696
BsuRI GGCC 4 cut(s) 200, 251, 273, 690
BtsCI GGATG 1 cut(s) 792
BtsIMutI CAGTG 1 cut(s) 562
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 275
CaiI CAGNNNCTG 1 cut(s) 755
CfoI GCGC 2 cut(s) 177, 317
Csp6I GTAC 1 cut(s) 865
CviAII CATG 2 cut(s) 77, 529
CviQI GTAC 1 cut(s) 865
DdeI CTNAG 8 cut(s) 22, 184, 261, 330, 434, 774, 835, 873
DpnI GATC 3 cut(s) 616, 748, 843
DpnII GATC 3 cut(s) 614, 746, 841
EaeI YGGCCR 1 cut(s) 688
Eam1104I CTCTTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 786
Eco130I CCWWGG 1 cut(s) 201
Eco147I AGGCCT 2 cut(s) 200, 273
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 80, 532
FaiI YATR 7 cut(s) 78, 93, 99, 372, 530, 644, 681
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FatI CATG 2 cut(s) 76, 528
FbaI TGATCA 1 cut(s) 841
Fnu4HI GCNGC 3 cut(s) 16, 19, 313
FokI GGATG 1 cut(s) 799
Fsp4HI GCNGC 3 cut(s) 16, 19, 313
FspBI CTAG 1 cut(s) 744
GlaI GCGC 2 cut(s) 176, 316
GluI GCNGC 3 cut(s) 16, 19, 313
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 4 cut(s) 200, 251, 273, 690
HapII CCGG 1 cut(s) 319
HhaI GCGC 2 cut(s) 177, 317
Hin1II CATG 2 cut(s) 80, 532
Hin6I GCGC 2 cut(s) 175, 315
HinP1I GCGC 2 cut(s) 175, 315
HinfI GANTC 7 cut(s) 26, 125, 497, 629, 740, 772, 818
HpaII CCGG 1 cut(s) 319
HphI GGTGA 2 cut(s) 492, 592
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 4 cut(s) 25, 187, 622, 739
Hpy188III TCNNGA 3 cut(s) 401, 744, 769
Hpy8I GTNNAC 1 cut(s) 721
HpyAV CCTTC 2 cut(s) 241, 640
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 5 cut(s) 277, 459, 470, 516, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 8 cut(s) 22, 184, 261, 330, 434, 774, 835, 873
Hsp92II CATG 2 cut(s) 80, 532
HspAI GCGC 2 cut(s) 175, 315
Ksp22I TGATCA 1 cut(s) 841
Kzo9I GATC 3 cut(s) 614, 746, 841
LguI GCTCTTC 1 cut(s) 786
LmnI GCTCC 2 cut(s) 532, 853
Lsp1109I GCAGC 2 cut(s) 27, 30
MaeI CTAG 1 cut(s) 744
MaeIII GTNAC 2 cut(s) 557, 626
MalI GATC 3 cut(s) 616, 748, 843
MboI GATC 3 cut(s) 614, 746, 841
MfeI CAATTG 1 cut(s) 335
MlsI TGGCCA 1 cut(s) 690
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 3 cut(s) 623, 734, 766
MnlI CCTC 8 cut(s) 58, 61, 211, 237, 256, 399, 571, 777
Mox20I TGGCCA 1 cut(s) 690
MroXI GAANNNNTTC 2 cut(s) 8, 667
MscI TGGCCA 1 cut(s) 690
MseI TTAA 4 cut(s) 179, 380, 443, 591
Msp20I TGGCCA 1 cut(s) 690
MspCI CTTAAG 1 cut(s) 178
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 319
MunI CAATTG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 354
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 257
NciI CCSGG 1 cut(s) 319
NdeII GATC 3 cut(s) 614, 746, 841
NlaIII CATG 2 cut(s) 80, 532
NlaIV GGNNCC 2 cut(s) 302, 767
NmuCI GTSAC 2 cut(s) 557, 626
PceI AGGCCT 2 cut(s) 200, 273
PciSI GCTCTTC 1 cut(s) 786
PctI GAATGC 1 cut(s) 354
PdmI GAANNNNTTC 2 cut(s) 8, 667
PfeI GAWTC 4 cut(s) 26, 125, 497, 818
PkrI GCNGC 3 cut(s) 17, 20, 314
PleI GAGTC 3 cut(s) 623, 734, 766
PpsI GAGTC 3 cut(s) 623, 734, 766
PspN4I GGNNCC 2 cut(s) 302, 767
PstI CTGCAG 1 cut(s) 472
PstNI CAGNNNCTG 1 cut(s) 755
RsaI GTAC 1 cut(s) 866
RsaNI GTAC 1 cut(s) 865
SapI GCTCTTC 1 cut(s) 786
SaqAI TTAA 4 cut(s) 179, 380, 443, 591
SatI GCNGC 3 cut(s) 16, 19, 313
Sau3AI GATC 3 cut(s) 614, 746, 841
SchI GAGTC 3 cut(s) 623, 734, 766
ScrFI CCNGG 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 178, 401
SmoI CTYRAG 2 cut(s) 178, 401
SseBI AGGCCT 2 cut(s) 200, 273
SsiI CCGC 2 cut(s) 310, 313
SspMI CTAG 1 cut(s) 744
StuI AGGCCT 2 cut(s) 200, 273
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 146
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 4 cut(s) 26, 125, 497, 818
Tru1I TTAA 4 cut(s) 179, 380, 443, 591
Tru9I TTAA 4 cut(s) 179, 380, 443, 591
TscAI CASTG 1 cut(s) 562
TseFI GTSAC 2 cut(s) 557, 626
TseI GCWGC 2 cut(s) 15, 18
Tsp45I GTSAC 2 cut(s) 557, 626
TspDTI ATGAA 4 cut(s) 17, 18, 659, 684
TspRI CASTG 1 cut(s) 562
Vha464I CTTAAG 1 cut(s) 178
XapI RAATTY 3 cut(s) 583, 664, 709
XbaI TCTAGA 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmnI GAANNNNTTC 2 cut(s) 8, 667
XspI CTAG 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.