Rh7CG486400

Homeobox-leucine zipper protein ATHB-6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014752
Physical Location & Seq
Forward (+)
65442121 .. 65444386
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG486400.1

Sequence Viewer

Length: 750 bp
ATGTTGGATTCTTATGACCAAGAAGATTGCGGTGAAGAAATCCTAGTGAAGAAAAGGCGCTTAAGCTCACATCAAGTCAAGGCTTTGGAGATGAGCTTTGAGGTTGAAAACAAGCTAGAGCCAGAGAGGAAGGTGAAACTAGCTGCGGAATTAGGCTTGGAACCAAGACAAGTAGCTATTTGGTTCCAGAACCGCAGAGCTCGTTGGAAGACTAAGCAGTTGGAAAGAGATTACAGTGTGCTGAAAGCTGATTATGATGCCTTGAAGCACAATTATGATGGCCTTGATAGACAGAATAAAGCTCTAGCCGATCAGCTAAAAGATCTAAAAGCAAAGCTGTGTAGAGATAATGCAGAAAGCGGTCAGTCTGTTAAAGAAGAATCACCAATTTCAGTGTACAAGAGCAGTGTAGTGGAGCAAAGTAGAGACCAGGATTTGAGTGACAATGGTGACAATGCAGGGCTGGATTTGTACAAGAATTTGAAATCCAAAGATGGGTCATCAGATAGTGATTCAAATGGAGCTATGAAGGAAGAGAGCAATGGCAATGAGTCTTCTCTGGGGTACAATGGTCATTCATTGTCTTCGAATTCGATGATGAACTGGTTTCAGCCATCAGATTCTAGGTCAGGTAATAAAGGGTATCATCATCAAACTCAGTTTGGGAGGATGGAGGAGCAGAGTTTGTTTAGCACAGAAGAGTCCTGCAATTTCTTTTCAGTTGATCAAGCTCCTAGTCTTCACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ Homeobox

Protein Analysis

249

Amino Acids

28.35

Weight (kDa)

5.28

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 18 - 70 1.2e-17 Homeodomain
HALZ PF02183 72 - 113 1.3e-14 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014752)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36570 FvH4_5g36570
malus_domestica MD08G1188500.v1.1 MD15G1374500.v1.1
prunus_persica Prupe.1G523000_v2.0.a1
pyrus_communis pycom08g16220 pycom15g33550
rosa_chinensis RchiOBHm_Chr7g0242271
rosa_laevigata RLG00000000903
rosa_multiflora Rmu_sc0000429.1_g000028
rosa_roxburghii Rroxscaffold_3G00222830
rosa_rugosa Rorug07G0314400 Rorug07G0314500
rosa_samantha Rh7BG439600 Rh7CG486400 Rh7DG454800
rosa_wichuraiana Rw0G009480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 30, 146, 193, 360
AcsI RAATTY 2 cut(s) 478, 589
AfaI GTAC 3 cut(s) 398, 473, 566
AfiI CCNNNNNNNGG 1 cut(s) 495
AflII CTTAAG 1 cut(s) 61
AgsI TTSAA 4 cut(s) 107, 265, 484, 516
AjnI CCWGG 1 cut(s) 429
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 420
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 2 cut(s) 478, 589
AspLEI GCGC 1 cut(s) 60
AsuHPI GGTGA 4 cut(s) 44, 145, 375, 461
AsuII TTCGAA 1 cut(s) 587
BaeI ACNNNNGTAYC 2 cut(s) 556, 589
BanII GRGCYC 1 cut(s) 202
BbsI GAAGAC 4 cut(s) 215, 546, 576, 731
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 130
BccI CCATC 4 cut(s) 272, 488, 622, 664
BciT130I CCWGG 1 cut(s) 431
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 6 cut(s) 44, 116, 140, 305, 624, 735
BfoI RGCGCY 1 cut(s) 61
BfrI CTTAAG 1 cut(s) 61
BglII AGATCT 1 cut(s) 322
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 431
BmiI GGNNCC 2 cut(s) 162, 185
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 1 cut(s) 247
BpiI GAAGAC 4 cut(s) 215, 546, 576, 731
Bpu14I TTCGAA 1 cut(s) 587
BsaI GGTCTC 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse1I ACTGG 2 cut(s) 608, 749
Bse3DI GCAATG 2 cut(s) 547, 553
BseBI CCWGG 1 cut(s) 431
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMI GCAATG 2 cut(s) 547, 553
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 2 cut(s) 608, 749
BseRI GAGGAG 1 cut(s) 689
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 495
BsmAI GTCTC 1 cut(s) 420
BsnI GGCC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 420
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 202
Bsp1407I TGTACA 2 cut(s) 396, 471
Bsp143I GATC 3 cut(s) 310, 322, 724
BspACI CCGC 4 cut(s) 30, 146, 193, 360
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 162, 185
BspT104I TTCGAA 1 cut(s) 587
BspTI CTTAAG 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 420
BsrDI GCAATG 2 cut(s) 547, 553
BsrGI TGTACA 2 cut(s) 396, 471
BsrI ACTGG 2 cut(s) 608, 749
BssMI GATC 3 cut(s) 310, 322, 724
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 2 cut(s) 528, 693
BstAFI CTTAAG 1 cut(s) 61
BstAUI TGTACA 2 cut(s) 396, 471
BstBI TTCGAA 1 cut(s) 587
BstDEI CTNAG 2 cut(s) 213, 657
BstF5I GGATG 1 cut(s) 675
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 3 cut(s) 313, 325, 727
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 3 cut(s) 310, 322, 724
BstNI CCWGG 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 4 cut(s) 215, 546, 576, 731
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 1 cut(s) 282
BtsCI GGATG 1 cut(s) 675
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 4 cut(s) 241, 399, 412, 742
CfoI GCGC 1 cut(s) 60
Csp6I GTAC 3 cut(s) 397, 472, 565
CviQI GTAC 3 cut(s) 397, 472, 565
DdeI CTNAG 2 cut(s) 213, 657
DpnI GATC 3 cut(s) 312, 324, 726
DpnII GATC 3 cut(s) 310, 322, 724
Eam1104I CTCTTC 2 cut(s) 528, 693
EarI CTCTTC 2 cut(s) 528, 693
Ecl136II GAGCTC 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 420
Eco53kI GAGCTC 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 202
FaiI YATR 4 cut(s) 15, 255, 276, 527
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 682
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 6 cut(s) 44, 116, 140, 305, 624, 735
GlaI GCGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 1 cut(s) 282
HhaI GCGC 1 cut(s) 60
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 6 cut(s) 8, 380, 512, 551, 620, 701
HphI GGTGA 4 cut(s) 44, 145, 375, 461
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 2 cut(s) 505, 619
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 2 cut(s) 124, 523
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 3 cut(s) 353, 458, 708
HpyF3I CTNAG 2 cut(s) 213, 657
HspAI GCGC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 3 cut(s) 310, 322, 724
LmnI GCTCC 4 cut(s) 415, 521, 676, 736
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 247
MaeI CTAG 6 cut(s) 44, 116, 140, 305, 624, 735
MaeIII GTNAC 2 cut(s) 440, 449
MalI GATC 3 cut(s) 312, 324, 726
MboI GATC 3 cut(s) 310, 322, 724
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 6 cut(s) 149, 271, 387, 478, 589, 709
MlyI GAGTC 2 cut(s) 560, 710
MmeI TCCRAC 2 cut(s) 185, 201
MnlI CCTC 4 cut(s) 94, 120, 660, 667
MseI TTAA 2 cut(s) 62, 372
MslI CAYNNNNRTG 1 cut(s) 273
MspCI CTTAAG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 431
MvaI CCWGG 1 cut(s) 431
NdeII GATC 3 cut(s) 310, 322, 724
NlaIV GGNNCC 2 cut(s) 162, 185
NmuCI GTSAC 2 cut(s) 440, 449
NspV TTCGAA 1 cut(s) 587
PfeI GAWTC 4 cut(s) 8, 380, 512, 620
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 2 cut(s) 559, 709
PpsI GAGTC 2 cut(s) 559, 709
Psp124BI GAGCTC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 2 cut(s) 162, 185
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 3 cut(s) 398, 473, 566
RsaNI GTAC 3 cut(s) 397, 472, 565
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 202
SaqAI TTAA 2 cut(s) 62, 372
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 3 cut(s) 310, 322, 724
SchI GAGTC 2 cut(s) 560, 710
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 1 cut(s) 247
SfuI TTCGAA 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 6 cut(s) 149, 271, 387, 478, 589, 709
SsiI CCGC 4 cut(s) 30, 146, 193, 360
SspMI CTAG 6 cut(s) 44, 116, 140, 305, 624, 735
SstI GAGCTC 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 587, 593
TasI AATT 6 cut(s) 149, 271, 387, 478, 589, 709
TatI WGTACW 2 cut(s) 396, 471
TfiI GAWTC 4 cut(s) 8, 380, 512, 620
Tru1I TTAA 2 cut(s) 62, 372
Tru9I TTAA 2 cut(s) 62, 372
TscAI CASTG 4 cut(s) 241, 399, 412, 749
TseFI GTSAC 2 cut(s) 440, 449
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 2 cut(s) 440, 449
TspDTI ATGAA 3 cut(s) 542, 567, 614
TspRI CASTG 4 cut(s) 241, 399, 412, 749
Vha464I CTTAAG 1 cut(s) 61
XapI RAATTY 2 cut(s) 478, 589
XspI CTAG 6 cut(s) 44, 116, 140, 305, 624, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.