pycom15g33550

Homeobox-leucine zipper protein ATHB-6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014752
Physical Location & Seq
Reverse (-)
32996191 .. 32997299
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g33550.2

Sequence Viewer

Length: 825 bp
ATGAAGAGGTTCAGCAGCTCAGATTCATTGGGCGCTTTGGTCTCCAATTTCCCATCAAAAGAGGAGGGGAAGCTTGCAAAGGACAGCTATGGTTATAGCAAGGAGTTGCAGGCAATGTTAGATTCGTTAAACCAAGAAGATGTTGGGGAAGAAATGTCAGGGAAGAAAAGGCGGTTGAATTCGGAGCAGGTCAAGGCATTGGAGAGAAATTTTGATGTTGAGAACAAGTTAGAGCCAGAAAGGAAGGTCAAACTGGCCGAGGAATTAGGCCTGCAACCGAGACAAGTGGCAATTTGGTTTCAAAACCGCCGCGCACGGTGGAAGACTAAGCAGTTGGAAAGAGACTACAGCATCCTCAAAACCGACTATGATGGTTTAAAGCTCAACTTTGATAGCCTTGAGAGACAGAATAAAGCTCTTGCTGAAAAGCTAAGCCAGTTAAAAGCAAAGCTGTACGGAGAGAGTGCACAGAGGAATGATTCTGTGAAGGAAGAATCCCCAATTTCAACGTGCAAAAGCAGTGAAAATTTAGAGGTGGATTTAATCAAGAACTTGAAATCCAAAGATGGCTCATCAGATAGTGATTCAAATGGCGTTCTTACGAAGGAAGAGAGCAATGGAAATTCATCTCTTGGATTTAATAATAATAGAAATTCAATTTCTTCAAATTCCATGGTGAATTGGTTTCAATTATCAGACTCCAGATCAGTGGGTGGAAAAGGATTTCAAGCTCAGACTGTGAGGATGGAGGAGCAGAGTTTTTTCAGCACAGATGAGTCCTGCAATTTCTTTTCAGTTGATCAAGCTCCAAGTCTTCATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ Homeobox

Protein Analysis

275

Amino Acids

31.03

Weight (kDa)

5.79

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014752)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36570 FvH4_5g36570
malus_domestica MD08G1188500.v1.1 MD15G1374500.v1.1
prunus_persica Prupe.1G523000_v2.0.a1
pyrus_communis pycom08g16220 pycom15g33550
rosa_chinensis RchiOBHm_Chr7g0242271
rosa_laevigata RLG00000000903
rosa_multiflora Rmu_sc0000429.1_g000028
rosa_roxburghii Rroxscaffold_3G00222830
rosa_rugosa Rorug07G0314400 Rorug07G0314500
rosa_samantha Rh7BG439600 Rh7CG486400 Rh7DG454800
rosa_wichuraiana Rw0G009480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 178
AccII CGCG 1 cut(s) 312
AciI CCGC 3 cut(s) 172, 307, 310
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 6 cut(s) 178, 208, 526, 622, 652, 667
AfaI GTAC 1 cut(s) 455
AgsI TTSAA 9 cut(s) 178, 302, 507, 556, 588, 657, 666, 689, 728
AloI GAACNNNNNNTCC 2 cut(s) 542, 574
AluBI AGCT 9 cut(s) 18, 73, 87, 382, 416, 430, 451, 731, 806
AluI AGCT 9 cut(s) 18, 73, 87, 382, 416, 430, 451, 731, 806
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 4 cut(s) 46, 274, 336, 397
Alw44I GTGCAC 1 cut(s) 465
AoxI GGCC 2 cut(s) 255, 268
ApaLI GTGCAC 1 cut(s) 465
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 6 cut(s) 178, 208, 526, 622, 652, 667
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 35, 314
AsuHPI GGTGA 1 cut(s) 688
BaeGI GKGCMC 1 cut(s) 469
BbsI GAAGAC 2 cut(s) 329, 806
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 1 cut(s) 27
BccI CCATC 4 cut(s) 61, 365, 560, 739
BclI TGATCA 1 cut(s) 799
BcoDI GTCTC 4 cut(s) 46, 274, 336, 397
BfmI CTRYAG 1 cut(s) 346
BfoI RGCGCY 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 178
BisI GCNGC 2 cut(s) 16, 310
BlpI GCTNAGC 1 cut(s) 431
BlsI GCNGC 2 cut(s) 17, 311
BmsI GCATC 1 cut(s) 360
BpiI GAAGAC 2 cut(s) 329, 806
BpmI CTGGAG 1 cut(s) 685
Bpu1102I GCTNAGC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 258, 672
Bse1I ACTGG 2 cut(s) 258, 436
Bse3DI GCAATG 2 cut(s) 120, 622
BseDI CCNNGG 2 cut(s) 258, 672
BseGI GGATG 2 cut(s) 351, 750
BseMI GCAATG 2 cut(s) 120, 622
BseMII CTCAG 2 cut(s) 33, 746
BseNI ACTGG 2 cut(s) 258, 436
BseRI GAGGAG 2 cut(s) 77, 764
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 2 cut(s) 257, 270
BsiHKAI GWGCWC 1 cut(s) 469
BsmAI GTCTC 4 cut(s) 46, 274, 336, 397
BsnI GGCC 2 cut(s) 257, 270
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 469
Bsp143I GATC 2 cut(s) 704, 799
Bsp1720I GCTNAGC 1 cut(s) 431
Bsp19I CCATGG 1 cut(s) 672
BspACI CCGC 3 cut(s) 172, 307, 310
BspANI GGCC 2 cut(s) 257, 270
BspCNI CTCAG 2 cut(s) 32, 745
BspFNI CGCG 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 2 cut(s) 120, 622
BsrI ACTGG 2 cut(s) 258, 436
BssECI CCNNGG 2 cut(s) 258, 672
BssMI GATC 2 cut(s) 704, 799
BssT1I CCWWGG 1 cut(s) 672
Bst4CI ACNGT 2 cut(s) 318, 739
Bst6I CTCTTC 1 cut(s) 603
BstC8I GCNNGC 3 cut(s) 75, 111, 272
BstDEI CTNAG 4 cut(s) 19, 327, 431, 732
BstDSI CCRYGG 1 cut(s) 672
BstF5I GGATG 2 cut(s) 351, 750
BstFNI CGCG 1 cut(s) 312
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 2 cut(s) 35, 314
BstKTI GATC 2 cut(s) 707, 802
BstMAI GTCTC 4 cut(s) 46, 274, 336, 397
BstMBI GATC 2 cut(s) 704, 799
BstSFI CTRYAG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 469
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 2 cut(s) 329, 806
BstXI CCANNNNNNTGG 1 cut(s) 709
BsuRI GGCC 2 cut(s) 257, 270
BtgI CCRYGG 1 cut(s) 672
BtsCI GGATG 2 cut(s) 351, 750
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 2 cut(s) 526, 714
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 3 cut(s) 75, 111, 272
CfoI GCGC 2 cut(s) 35, 314
Csp6I GTAC 1 cut(s) 454
CviAII CATG 1 cut(s) 673
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 4 cut(s) 19, 327, 431, 732
DpnI GATC 2 cut(s) 706, 801
DpnII GATC 2 cut(s) 704, 799
DraI TTTAAA 1 cut(s) 378
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 672
Eco147I AGGCCT 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 1 cut(s) 676
FaiI YATR 4 cut(s) 90, 96, 369, 674
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 1 cut(s) 672
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 2 cut(s) 16, 310
FokI GGATG 2 cut(s) 338, 757
Fsp4HI GCNGC 2 cut(s) 16, 310
GlaI GCGC 2 cut(s) 34, 313
GluI GCNGC 2 cut(s) 16, 310
GsuI CTGGAG 1 cut(s) 685
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 2 cut(s) 257, 270
HhaI GCGC 2 cut(s) 35, 314
Hin1II CATG 1 cut(s) 676
Hin6I GCGC 2 cut(s) 33, 312
HinP1I GCGC 2 cut(s) 33, 312
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 7 cut(s) 23, 122, 479, 494, 584, 698, 776
HphI GGTGA 1 cut(s) 688
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 5 cut(s) 22, 184, 577, 697, 735
Hpy188III TCNNGA 2 cut(s) 547, 702
Hpy8I GTNNAC 1 cut(s) 467
HpyAV CCTTC 3 cut(s) 238, 481, 598
HpyCH4III ACNGT 2 cut(s) 318, 739
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 6 cut(s) 77, 109, 274, 467, 513, 783
HpyF3I CTNAG 4 cut(s) 19, 327, 431, 732
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 1 cut(s) 676
HspAI GCGC 2 cut(s) 33, 312
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 2 cut(s) 704, 799
LmnI GCTCC 3 cut(s) 184, 751, 811
LpnPI CCDG 9 cut(s) 95, 144, 173, 239, 249, 284, 449, 715, 793
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 360
MaeII ACGT 1 cut(s) 509
MalI GATC 2 cut(s) 706, 801
MboI GATC 2 cut(s) 704, 799
MboII GAAGA 9 cut(s) 16, 149, 161, 175, 334, 503, 620, 654, 806
MhlI GDGCHC 1 cut(s) 469
MlyI GAGTC 2 cut(s) 692, 785
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 8 cut(s) 55, 58, 253, 365, 465, 526, 735, 742
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 5 cut(s) 128, 377, 440, 542, 639
MvnI CGCG 1 cut(s) 312
NcoI CCATGG 1 cut(s) 672
NdeII GATC 2 cut(s) 704, 799
NlaIII CATG 1 cut(s) 676
NmeAIII GCCGAG 1 cut(s) 283
PceI AGGCCT 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 5 cut(s) 23, 122, 479, 494, 584
PkrI GCNGC 2 cut(s) 17, 311
PleI GAGTC 2 cut(s) 692, 784
PpsI GAGTC 2 cut(s) 692, 784
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SaqAI TTAA 5 cut(s) 128, 377, 440, 542, 639
SatI GCNGC 2 cut(s) 16, 310
Sau3AI GATC 2 cut(s) 704, 799
SchI GAGTC 2 cut(s) 692, 785
SduI GDGCHC 1 cut(s) 469
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SseBI AGGCCT 1 cut(s) 270
SsiI CCGC 3 cut(s) 172, 307, 310
StuI AGGCCT 1 cut(s) 270
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 2 cut(s) 318, 739
TaiI ACGT 1 cut(s) 512
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 5 cut(s) 23, 122, 479, 494, 584
Tru1I TTAA 5 cut(s) 128, 377, 440, 542, 639
Tru9I TTAA 5 cut(s) 128, 377, 440, 542, 639
TscAI CASTG 2 cut(s) 526, 714
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 4 cut(s) 15, 17, 615, 806
TspGWI ACGGA 1 cut(s) 471
TspRI CASTG 2 cut(s) 526, 714
VneI GTGCAC 1 cut(s) 465
XapI RAATTY 6 cut(s) 178, 208, 526, 622, 652, 667
XcmI CCANNNNNNNNNTGG 2 cut(s) 140, 816
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.