Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0014752

Physical Location & Seq

Genomic Coordinates Reverse (-)

16091322 .. 16092407

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAGAGGTTCGGCAGCTCAGAGTCATTGGGTGCTTTGGTCTCCAATTTCCCATCAAAAGAGGAGGTAAAGCTTGCAAAGGACAAATATGGTTACAGCAAGGAGTTTCAGGCAATGTTAGATTCTTTAGAACAAGAAGATATTGGGGAAGAAATGTCAGGGAAGAAAAGGCGGTTGAGCTCGGAGCAGGTCAAGGCCTTGGAGAGAAGCTTTGAGGTTGAGAACAAGTTAGAGCCCGAGAGGAAGGTCAAACTGGCTGAGGAATTAGGCCTGCAACCGAGACAAGTGGCGATTTGGTTCCAAAACCGTCGCGCACGGTGGAAGACTAAGCAGTTGGAAAGAGACTACAGCGTCCTCAAAGCTGACTATGATGGTTTAAAGCACAACTTTGATAGCCTTGAGAGACAGAATAAAGCTCTTGCTGAAAAGCTAAGTCAGTTAAAAGCGAAGCTGTTCACAGAAGGTGCAGAGAGCAACGGCTCCGCGAAAGAAGAATCACCAATTTCAACGTGCAAAAGCAGTGAAAATATAGAGGTGGAGTTCAAGAACTTGAAGACCAAAGATGGTTCATCAGATAGTGATTCAAATGAAGTTCTTATGAAGGAAGAGAGCAATGGAAATTCATGTCTTGGATATAATAATAATAATTCAATTTCTTCAACTTCCATGGTGAATTGGTTTCAATTATCTGAGTCCAGATCAGTAGCTGCAGGAAAAGGGTTTCAAGGCCAGCTTGTGAGGATGGAAGAGCAGAGTCTTTTCACCACAGATGAGTCCTGCAATTTCTTTTCAGTCGATCAAGCTCCTAGTCTTCATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

274

Amino Acids

30.93

Weight (kDa)

5.45

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	55 - 108	7.3e-18	Homeodomain
HALZ	PF02183	110 - 151	1.4e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014752)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36570 FvH4_5g36570
malus_domestica	MD08G1188500.v1.1 MD15G1374500.v1.1
prunus_persica	Prupe.1G523000_v2.0.a1
pyrus_communis	pycom08g16220 pycom15g33550
rosa_chinensis	RchiOBHm_Chr7g0242271
rosa_laevigata	RLG00000000903
rosa_multiflora	Rmu_sc0000429.1_g000028
rosa_roxburghii	Rroxscaffold_3G00222830
rosa_rugosa	Rorug07G0314400 Rorug07G0314500
rosa_samantha	Rh7BG439600 Rh7CG486400 Rh7DG454800
rosa_wichuraiana	Rw0G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	178
AccII	CGCG	2 cut(s)	312, 485
AciI	CCGC	2 cut(s)	172, 483
AcsI	RAATTY	1 cut(s)	619
AgsI	TTSAA	8 cut(s)	507, 544, 553, 585, 651, 660, 683, 725
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	4 cut(s)	46, 274, 336, 397
AlwNI	CAGNNNCTG	1 cut(s)	707
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	195, 268, 727
ApeKI	GCWGC	2 cut(s)	15, 707
ApoI	RAATTY	1 cut(s)	619
Asp700I	GAANNNNTTC	2 cut(s)	8, 452
AspLEI	GCGC	1 cut(s)	314
AsuHPI	GGTGA	3 cut(s)	489, 682, 754
AvaI	CYCGRG	1 cut(s)	236
BanII	GRGCYC	2 cut(s)	182, 237
BbsI	GAAGAC	3 cut(s)	329, 560, 803
Bbv12I	GWGCWC	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	27, 694
BccI	CCATC	4 cut(s)	61, 365, 557, 736
BceAI	ACGGC	1 cut(s)	493
BcoDI	GTCTC	4 cut(s)	46, 274, 336, 397
BfaI	CTAG	1 cut(s)	807
BfmI	CTRYAG	2 cut(s)	346, 708
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	2 cut(s)	16, 708
BlsI	GCNGC	2 cut(s)	17, 709
BmeT110I	CYCGRG	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	299, 481
BpiI	GAAGAC	3 cut(s)	329, 560, 803
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	198, 666
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	2 cut(s)	120, 619
BseDI	CCNNGG	2 cut(s)	198, 666
BseGI	GGATG	1 cut(s)	747
BseMI	GCAATG	2 cut(s)	120, 619
BseMII	CTCAG	3 cut(s)	33, 249, 681
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	27, 694
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	2 cut(s)	312, 485
BshFI	GGCC	3 cut(s)	197, 270, 729
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	236
BsmAI	GTCTC	4 cut(s)	46, 274, 336, 397
BsnI	GGCC	3 cut(s)	197, 270, 729
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	182, 237
Bsp143I	GATC	2 cut(s)	698, 796
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	2 cut(s)	172, 483
BspANI	GGCC	3 cut(s)	197, 270, 729
BspCNI	CTCAG	3 cut(s)	32, 250, 682
BspFNI	CGCG	2 cut(s)	312, 485
BspLI	GGNNCC	2 cut(s)	299, 481
BspMAI	CTGCAG	1 cut(s)	712
BspMI	ACCTGC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	741
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	120, 619
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	198, 666
BssMI	GATC	2 cut(s)	698, 796
BssT1I	CCWWGG	2 cut(s)	198, 666
Bst4CI	ACNGT	2 cut(s)	308, 318
Bst6I	CTCTTC	2 cut(s)	600, 741
BstC8I	GCNNGC	3 cut(s)	75, 272, 731
BstDEI	CTNAG	5 cut(s)	19, 258, 327, 431, 690
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	1 cut(s)	747
BstFNI	CGCG	2 cut(s)	312, 485
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	2 cut(s)	701, 799
BstMAI	GTCTC	4 cut(s)	46, 274, 336, 397
BstMBI	GATC	2 cut(s)	698, 796
BstSFI	CTRYAG	2 cut(s)	346, 708
BstUI	CGCG	2 cut(s)	312, 485
BstV1I	GCAGC	2 cut(s)	27, 694
BstV2I	GAAGAC	3 cut(s)	329, 560, 803
BsuRI	GGCC	3 cut(s)	197, 270, 729
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	1 cut(s)	747
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	526
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	3 cut(s)	75, 272, 731
CaiI	CAGNNNCTG	1 cut(s)	707
CfoI	GCGC	1 cut(s)	314
CseI	GACGC	1 cut(s)	340
CviAII	CATG	2 cut(s)	624, 667
DdeI	CTNAG	5 cut(s)	19, 258, 327, 431, 690
DpnI	GATC	2 cut(s)	700, 798
DpnII	GATC	2 cut(s)	698, 796
DraI	TTTAAA	1 cut(s)	378
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eam1104I	CTCTTC	2 cut(s)	600, 741
EarI	CTCTTC	2 cut(s)	600, 741
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	198, 666
Eco147I	AGGCCT	2 cut(s)	197, 270
Eco24I	GRGCYC	2 cut(s)	182, 237
Eco31I	GGTCTC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	180
EcoT14I	CCWWGG	2 cut(s)	198, 666
EcoT38I	GRGCYC	2 cut(s)	182, 237
ErhI	CCWWGG	2 cut(s)	198, 666
FaeI	CATG	2 cut(s)	627, 670
FaiI	YATR	7 cut(s)	90, 369, 530, 599, 625, 636, 668
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 717, 749
FatI	CATG	2 cut(s)	623, 666
Fnu4HI	GCNGC	2 cut(s)	16, 708
FokI	GGATG	1 cut(s)	754
FriOI	GRGCYC	2 cut(s)	182, 237
Fsp4HI	GCNGC	2 cut(s)	16, 708
FspBI	CTAG	1 cut(s)	807
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	2 cut(s)	16, 708
HaeIII	GGCC	3 cut(s)	197, 270, 729
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	2 cut(s)	627, 670
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HindIII	AAGCTT	2 cut(s)	71, 208
HinfI	GANTC	7 cut(s)	23, 122, 494, 581, 692, 754, 773
HphI	GGTGA	3 cut(s)	489, 682, 754
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	4 cut(s)	22, 184, 574, 691
Hpy188III	TCNNGA	2 cut(s)	544, 696
Hpy8I	GTNNAC	1 cut(s)	456
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	3 cut(s)	238, 455, 595
HpyCH4III	ACNGT	2 cut(s)	308, 318
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	6 cut(s)	77, 274, 467, 513, 710, 780
HpyF3I	CTNAG	5 cut(s)	19, 258, 327, 431, 690
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	2 cut(s)	627, 670
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	698, 796
LguI	GCTCTTC	1 cut(s)	741
LmnI	GCTCC	3 cut(s)	184, 485, 808
LpnPI	CCDG	9 cut(s)	95, 144, 173, 239, 284, 696, 709, 743, 790
Lsp1109I	GCAGC	2 cut(s)	27, 694
MaeI	CTAG	1 cut(s)	807
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	700, 798
MboI	GATC	2 cut(s)	698, 796
MhlI	GDGCHC	2 cut(s)	182, 237
MluCI	AATT	9 cut(s)	46, 263, 501, 619, 646, 651, 673, 683, 781
MlyI	GAGTC	4 cut(s)	32, 701, 763, 782
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	8 cut(s)	55, 58, 208, 234, 253, 365, 526, 732
MroXI	GAANNNNTTC	2 cut(s)	8, 452
MseI	TTAA	2 cut(s)	377, 440
MvnI	CGCG	2 cut(s)	312, 485
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	2 cut(s)	698, 796
NlaIII	CATG	2 cut(s)	627, 670
NlaIV	GGNNCC	2 cut(s)	299, 481
PceI	AGGCCT	2 cut(s)	197, 270
PciSI	GCTCTTC	1 cut(s)	741
PdmI	GAANNNNTTC	2 cut(s)	8, 452
PfeI	GAWTC	3 cut(s)	122, 494, 581
PkrI	GCNGC	2 cut(s)	17, 709
PleI	GAGTC	4 cut(s)	31, 700, 762, 781
PpsI	GAGTC	4 cut(s)	31, 700, 762, 781
Psp124BI	GAGCTC	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	299, 481
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	707
SacI	GAGCTC	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	741
SaqAI	TTAA	2 cut(s)	377, 440
SatI	GCNGC	2 cut(s)	16, 708
Sau3AI	GATC	2 cut(s)	698, 796
SchI	GAGTC	4 cut(s)	32, 701, 763, 782
SduI	GDGCHC	2 cut(s)	182, 237
SfcI	CTRYAG	2 cut(s)	346, 708
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	9 cut(s)	46, 263, 501, 619, 646, 651, 673, 683, 781
SseBI	AGGCCT	2 cut(s)	197, 270
SsiI	CCGC	2 cut(s)	172, 483
SspMI	CTAG	1 cut(s)	807
SstI	GAGCTC	1 cut(s)	182
StuI	AGGCCT	2 cut(s)	197, 270
StyI	CCWWGG	2 cut(s)	198, 666
TaaI	ACNGT	2 cut(s)	308, 318
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	1 cut(s)	795
TasI	AATT	9 cut(s)	46, 263, 501, 619, 646, 651, 673, 683, 781
TfiI	GAWTC	3 cut(s)	122, 494, 581
Tru1I	TTAA	2 cut(s)	377, 440
Tru9I	TTAA	2 cut(s)	377, 440
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	2 cut(s)	15, 707
TspDTI	ATGAA	6 cut(s)	17, 558, 603, 612, 614, 803
TspRI	CASTG	1 cut(s)	526
XapI	RAATTY	1 cut(s)	619
XmnI	GAANNNNTTC	2 cut(s)	8, 452
XspI	CTAG	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.