FvH4_5g37370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012040
Physical Location & Seq
Reverse (-)
27473823 .. 27475827
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37370.t1

Sequence Viewer

Length: 720 bp
ATGGAGAAGAGAAAGAGAGAGCTAATAAGCTTAGCCAACTTGGATTGCACGTCATGCATGGGTAGGCCAGCTATGGTGTCTTTTCAAGCTCAGCCCCTTTCACCAAACCAGAAGAGATCAATCACAGACGACTCTGAGAATTCATGCAAGAAGAGAAAGTGGGATGACCCTTTTCCTTTTTTGGAACTCGACAAGCGTTCGAAACCAGCAGCTGATCAGATCAGACCAAAGTCCTTCTTTGATGTTGAGCTCCACCTCGAGACTCCATTGCCTTTGGAGTGGCAACGATGCCTTGATATTCAGTCGGGCCAGATACACTTTTACAACACAAGAACACAGATGAAGACTTCAAGGGATCCAAGGAGGAGTACTACTCCTGAGCCACCAAGCACTAATCATCACATGAGCTTAGACCTTGAGCTCAACCTGAGATGCGACTCCCAGCCCCATCATCCAGAGATTTCACCAAACAGCTTCAGGGCACTTTTCAAGAACAACTCATCAAGGCTGGGGCTTGAACTTGATCATGACCAAGAGATGGTGGCAACTGTGTGCATGAGGTGCCACATGTTGGTCATGCTGTGCAAGTCTTCACCTGCTTGCCCAAATTGCAAGTATATGCACACACCTGATCAGAGCCCCTCAACCCCATTCAAGCCAATGAGTCAAGGTCACGTAGCTTCATCATGTCCTAGTAAGATCAAAGCAGCCTGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.42

Weight (kDa)

8.63

Isoelectric Point (pI)

78.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22250 AT1G78170 AT4G08910
fragaria_vesca FvH4_5g37370
malus_domestica MD08G1182400.v1.1 MD15G1368100.v1.1
prunus_persica Prupe.1G516300_v2.0.a1
pyrus_communis pycom08g15620 pycom15g33000
rosa_chinensis RchiOBHm_Chr7g0239041
rosa_laevigata RLG00000000788
rosa_multiflora Rmu_sc0005651.1_g000002
rosa_roxburghii Rroxscaffold_3G00221340
rosa_rugosa Rorug07G0324800
rosa_samantha Rh7AG479700 Rh7BG452500 Rh7CG497200 Rh7DG464700
rosa_wichuraiana Rw7G040110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 604
Acc36I ACCTGC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 561
AccB7I CCANNNNNTGG 2 cut(s) 538, 571
AclWI GGATC 2 cut(s) 350, 363
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 460
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 2 cut(s) 538, 571
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 5 cut(s) 86, 351, 490, 518, 655
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 1 cut(s) 710
Alw21I GWGCWC 2 cut(s) 252, 423
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 2 cut(s) 350, 363
AlwNI CAGNNNCTG 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 2 cut(s) 65, 307
ApeKI GCWGC 2 cut(s) 209, 707
ApoI RAATTY 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 3 cut(s) 93, 456, 585
AsuII TTCGAA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 484
BamHI GGATCC 1 cut(s) 355
BanI GGYRCC 1 cut(s) 561
BanII GRGCYC 3 cut(s) 252, 423, 641
BbsI GAAGAC 2 cut(s) 350, 582
Bbv12I GWGCWC 2 cut(s) 252, 423
BbvI GCAGC 1 cut(s) 221
BccI CCATC 2 cut(s) 456, 532
BciT130I CCWGG 1 cut(s) 712
BclI TGATCA 3 cut(s) 214, 523, 631
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 693
BfuAI ACCTGC 1 cut(s) 604
BisI GCNGC 2 cut(s) 210, 708
BlpI GCTNAGC 2 cut(s) 31, 90
BlsI GCNGC 2 cut(s) 211, 709
BmcAI AGTACT 1 cut(s) 370
Bme1390I CCNGG 1 cut(s) 712
BmeT110I CYCGRG 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 357, 563
BmrFI CCNGG 1 cut(s) 712
BmsI GCATC 2 cut(s) 278, 422
BoxI GACNNNNGTC 1 cut(s) 229
BpiI GAAGAC 2 cut(s) 350, 582
BplI GAGNNNNNCTC 2 cut(s) 358, 390
Bpu10I CCTNAGC 1 cut(s) 378
Bpu1102I GCTNAGC 2 cut(s) 31, 90
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 437
BsaAI YACGTR 1 cut(s) 676
BsaJI CCNNGG 1 cut(s) 359
Bsc4I CCNNNNNNNGG 2 cut(s) 538, 571
Bse3DI GCAATG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 712
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 2 cut(s) 169, 451
BseLI CCNNNNNNNGG 2 cut(s) 538, 571
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 4 cut(s) 104, 126, 369, 419
BseRI GAGGAG 1 cut(s) 379
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 1 cut(s) 221
BseYI CCCAGC 2 cut(s) 441, 508
BshFI GGCC 2 cut(s) 67, 309
BshNI GGYRCC 1 cut(s) 561
BsiHKAI GWGCWC 2 cut(s) 252, 423
BsiHKCI CYCGRG 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 538, 571
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 2 cut(s) 67, 309
BsoBI CYCGRG 1 cut(s) 257
Bsp119I TTCGAA 1 cut(s) 200
Bsp1286I GDGCHC 4 cut(s) 252, 423, 484, 641
Bsp143I GATC 7 cut(s) 116, 214, 219, 355, 523, 631, 699
Bsp1720I GCTNAGC 2 cut(s) 31, 90
BspANI GGCC 2 cut(s) 67, 309
BspCNI CTCAG 4 cut(s) 103, 127, 370, 420
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 2 cut(s) 357, 563
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 2 cut(s) 350, 363
BspT104I TTCGAA 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 561
BsrDI GCAATG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 7 cut(s) 116, 214, 219, 355, 523, 631, 699
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 712
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 3 cut(s) 2, 107, 146
BstAPI GCANNNNNTGC 2 cut(s) 54, 561
BstBAI YACGTR 1 cut(s) 676
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 69, 601
BstDEI CTNAG 6 cut(s) 31, 90, 135, 378, 409, 428
BstF5I GGATG 2 cut(s) 169, 451
BstKTI GATC 7 cut(s) 119, 217, 222, 358, 526, 634, 702
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 7 cut(s) 116, 214, 219, 355, 523, 631, 699
BstMWI GCNNNNNNNGC 3 cut(s) 54, 561, 609
BstNI CCWGG 1 cut(s) 712
BstNSI RCATGY 1 cut(s) 571
BstPAI GACNNNNGTC 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 710
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 2 cut(s) 350, 582
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 2 cut(s) 67, 309
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 2 cut(s) 169, 451
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 2 cut(s) 69, 601
CaiI CAGNNNCTG 1 cut(s) 212
CciI TCATGA 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 369
CviAII CATG 9 cut(s) 54, 58, 144, 403, 527, 556, 568, 577, 687
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 6 cut(s) 31, 90, 135, 378, 409, 428
DpnI GATC 7 cut(s) 118, 216, 221, 357, 525, 633, 701
DpnII GATC 7 cut(s) 116, 214, 219, 355, 523, 631, 699
Eam1104I CTCTTC 3 cut(s) 2, 107, 146
EarI CTCTTC 3 cut(s) 2, 107, 146
Ecl136II GAGCTC 2 cut(s) 250, 421
Eco130I CCWWGG 1 cut(s) 359
Eco24I GRGCYC 3 cut(s) 252, 423, 641
Eco53kI GAGCTC 2 cut(s) 250, 421
Eco57I CTGAAG 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 257
EcoICRI GAGCTC 2 cut(s) 250, 421
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 710
EcoT14I CCWWGG 1 cut(s) 359
EcoT22I ATGCAT 1 cut(s) 59
EcoT38I GRGCYC 3 cut(s) 252, 423, 641
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 9 cut(s) 57, 61, 147, 406, 530, 559, 571, 580, 690
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 9 cut(s) 53, 57, 143, 402, 526, 555, 567, 576, 686
FbaI TGATCA 3 cut(s) 214, 523, 631
Fnu4HI GCNGC 2 cut(s) 210, 708
FokI GGATG 2 cut(s) 176, 438
FriOI GRGCYC 3 cut(s) 252, 423, 641
Fsp4HI GCNGC 2 cut(s) 210, 708
FspBI CTAG 1 cut(s) 693
GluI GCNGC 2 cut(s) 210, 708
GsaI CCCAGC 2 cut(s) 445, 512
HaeIII GGCC 2 cut(s) 67, 309
Hin1II CATG 9 cut(s) 57, 61, 147, 406, 530, 559, 571, 580, 690
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 4 cut(s) 131, 262, 437, 664
HphI GGTGA 3 cut(s) 93, 456, 585
Hpy188I TCNGA 4 cut(s) 136, 219, 224, 636
Hpy188III TCNNGA 5 cut(s) 259, 377, 455, 490, 527
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 2 cut(s) 50, 675
HpyCH4V TGCA 7 cut(s) 48, 57, 147, 555, 585, 612, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 561, 609
HpyF3I CTNAG 6 cut(s) 31, 90, 135, 378, 409, 428
HpySE526I ACGT 2 cut(s) 50, 675
Hsp92II CATG 9 cut(s) 57, 61, 147, 406, 530, 559, 571, 580, 690
Ksp22I TGATCA 3 cut(s) 214, 523, 631
Kzo9I GATC 7 cut(s) 116, 214, 219, 355, 523, 631, 699
LmnI GCTCC 1 cut(s) 255
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 2 cut(s) 278, 422
MaeI CTAG 1 cut(s) 693
MaeII ACGT 2 cut(s) 50, 675
MaeIII GTNAC 1 cut(s) 671
MalI GATC 7 cut(s) 118, 216, 221, 357, 525, 633, 701
MboI GATC 7 cut(s) 116, 214, 219, 355, 523, 631, 699
MboII GAAGA 5 cut(s) 19, 124, 163, 355, 582
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 4 cut(s) 252, 423, 484, 641
MluCI AATT 2 cut(s) 139, 607
MlyI GAGTC 4 cut(s) 125, 256, 431, 673
MnlI CCTC 4 cut(s) 266, 357, 552, 652
Mph1103I ATGCAT 1 cut(s) 59
MseI TTAA 1 cut(s) 718
MspA1I CMGCKG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 712
MvaI CCWGG 1 cut(s) 712
MwoI GCNNNNNNNGC 3 cut(s) 54, 561, 609
NdeII GATC 7 cut(s) 116, 214, 219, 355, 523, 631, 699
NlaIII CATG 9 cut(s) 57, 61, 147, 406, 530, 559, 571, 580, 690
NlaIV GGNNCC 2 cut(s) 357, 563
NmuCI GTSAC 1 cut(s) 671
NsiI ATGCAT 1 cut(s) 59
NspI RCATGY 1 cut(s) 571
NspV TTCGAA 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 257
PagI TCATGA 1 cut(s) 526
PaqCI CACCTGC 1 cut(s) 604
PciI ACATGT 1 cut(s) 567
PflMI CCANNNNNTGG 2 cut(s) 538, 571
PkrI GCNGC 2 cut(s) 211, 709
PleI GAGTC 4 cut(s) 125, 256, 431, 672
PpsI GAGTC 4 cut(s) 125, 256, 431, 672
Ppu21I YACGTR 1 cut(s) 676
PscI ACATGT 1 cut(s) 567
PshAI GACNNNNGTC 1 cut(s) 229
Psp124BI GAGCTC 2 cut(s) 252, 423
Psp6I CCWGG 1 cut(s) 710
PspFI CCCAGC 2 cut(s) 441, 508
PspGI CCWGG 1 cut(s) 710
PspN4I GGNNCC 2 cut(s) 357, 563
PspPI GGNCC 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SacI GAGCTC 2 cut(s) 252, 423
SaqAI TTAA 1 cut(s) 718
SatI GCNGC 2 cut(s) 210, 708
Sau3AI GATC 7 cut(s) 116, 214, 219, 355, 523, 631, 699
Sau96I GGNCC 1 cut(s) 307
ScaI AGTACT 1 cut(s) 370
SchI GAGTC 4 cut(s) 125, 256, 431, 673
ScrFI CCNGG 1 cut(s) 712
SduI GDGCHC 4 cut(s) 252, 423, 484, 641
SfaNI GCATC 2 cut(s) 278, 422
Sfr274I CTCGAG 1 cut(s) 257
SfuI TTCGAA 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 257, 416
SmoI CTYRAG 2 cut(s) 257, 416
Sse9I AATT 2 cut(s) 139, 607
SspMI CTAG 1 cut(s) 693
SstI GAGCTC 2 cut(s) 252, 423
StyD4I CCNGG 1 cut(s) 710
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 2 cut(s) 53, 678
TaqI TCGA 3 cut(s) 189, 200, 258
TasI AATT 2 cut(s) 139, 607
TatI WGTACW 1 cut(s) 368
Tru1I TTAA 1 cut(s) 718
Tru9I TTAA 1 cut(s) 718
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 2 cut(s) 209, 707
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 3 cut(s) 132, 356, 672
Van91I CCANNNNNTGG 2 cut(s) 538, 571
XapI RAATTY 1 cut(s) 139
XceI RCATGY 1 cut(s) 571
XhoI CTCGAG 1 cut(s) 257
XspI CTAG 1 cut(s) 693
ZrmI AGTACT 1 cut(s) 370
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.