MD15G1368100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012040
Physical Location & Seq
Forward (+)
44779133 .. 44780249
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1368100.v1.1.491

Sequence Viewer

Length: 666 bp
ATGCTTTCTTTTCAAGCTCATCCTCTTTCTCCAAACCAAAAGAAGACAATCCCAGACTCTGAGAATTCATCCAAGAAAAGAAAATGGGATGACTTGCCATACGTTAATATTGAGCAACTTTCCGAAAAACGTTCAAAAGTACCACAAAGCAAACCAAATTCCTTGTTTGATATAGAGCTTCACCTAGAGACTCCATTGCCTTTGGAGTGGCAAAGATGCCTCGATATTCAGTCGGGACAGATACATTTTTACAACACAAGGACTCAGATGAAGACTTCAAGGGACCCAAGGAGGAGCCCTGAGCCACCAACCAGTCCAGCTGCTGATCATCATCATCATCACATGAGCCTAGACCTGGAGCTCAACCTAAGATCATGTGATCAGTCTAGGGCTAATTCAGACATTTCAACACACAGCTTGAGTGATTTGTTCATGGAGTCCCATAGACCAACAAAAAAGAACCCCAATAATTTAGGGTTTCCATTTGATCACCACCACCACCAGCAGGAGATGGTGGCAACTGTGTGCCTCAAGTGCCACATGCTGGTGATGCTGTGCAGGTCTTCTCCTACATGCCCTAATTGCAAGTACATGCACGCACCTGATCAGAGCCCCCCAACCCTCTTCAATTTCAAGCCAAGGTGTACCAGTAGCTTCATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.58

Weight (kDa)

8.37

Isoelectric Point (pI)

79.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22250 AT1G78170 AT4G08910
fragaria_vesca FvH4_5g37370
malus_domestica MD08G1182400.v1.1 MD15G1368100.v1.1
prunus_persica Prupe.1G516300_v2.0.a1
pyrus_communis pycom08g15620 pycom15g33000
rosa_chinensis RchiOBHm_Chr7g0239041
rosa_laevigata RLG00000000788
rosa_multiflora Rmu_sc0005651.1_g000002
rosa_roxburghii Rroxscaffold_3G00221340
rosa_rugosa Rorug07G0324800
rosa_samantha Rh7AG479700 Rh7BG452500 Rh7CG497200 Rh7DG464700
rosa_wichuraiana Rw7G040110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 549
AccB7I CCANNNNNTGG 1 cut(s) 544
AclI AACGTT 1 cut(s) 130
AcsI RAATTY 2 cut(s) 64, 157
AfaI GTAC 3 cut(s) 141, 590, 646
AfiI CCNNNNNNNGG 3 cut(s) 355, 505, 544
AgsI TTSAA 6 cut(s) 14, 135, 279, 408, 628, 634
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 6 cut(s) 17, 178, 320, 361, 417, 654
AluI AGCT 6 cut(s) 17, 178, 320, 361, 417, 654
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 2 cut(s) 59, 323
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 2 cut(s) 64, 157
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 3 cut(s) 173, 482, 559
AvaII GGWCC 1 cut(s) 283
BanII GRGCYC 3 cut(s) 299, 363, 614
BbsI GAAGAC 3 cut(s) 50, 278, 555
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 505
BciT130I CCWGG 1 cut(s) 356
BclI TGATCA 4 cut(s) 325, 379, 487, 604
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 3 cut(s) 185, 350, 387
BfuAI ACCTGC 1 cut(s) 549
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 3 cut(s) 284, 285, 296
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 2 cut(s) 206, 540
BpiI GAAGAC 3 cut(s) 50, 278, 555
BpmI CTGGAG 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 439, 515
BsaBI GATNNNNATC 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 287, 638
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 505, 544
Bse1I ACTGG 2 cut(s) 312, 648
Bse3DI GCAATG 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 2 cut(s) 287, 638
BseGI GGATG 3 cut(s) 19, 68, 94
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 3 cut(s) 355, 505, 544
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 3 cut(s) 51, 278, 291
BseNI ACTGG 2 cut(s) 312, 648
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 577
BsiHKAI GWGCWC 1 cut(s) 363
BslFI GGGAC 3 cut(s) 249, 296, 424
BslI CCNNNNNNNGG 3 cut(s) 355, 505, 544
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 3 cut(s) 249, 296, 424
Bsp1286I GDGCHC 3 cut(s) 299, 363, 614
Bsp143I GATC 5 cut(s) 325, 371, 379, 487, 604
BspCNI CTCAG 3 cut(s) 52, 277, 292
BspLI GGNNCC 3 cut(s) 284, 285, 296
BspMI ACCTGC 1 cut(s) 549
BsrDI GCAATG 1 cut(s) 194
BsrI ACTGG 2 cut(s) 312, 648
BssECI CCNNGG 2 cut(s) 287, 638
BssMI GATC 5 cut(s) 325, 371, 379, 487, 604
BssT1I CCWWGG 2 cut(s) 287, 638
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 4 cut(s) 60, 264, 300, 368
BstF5I GGATG 3 cut(s) 19, 68, 94
BstKTI GATC 5 cut(s) 328, 374, 382, 490, 607
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 5 cut(s) 325, 371, 379, 487, 604
BstMWI GCNNNNNNNGC 3 cut(s) 534, 550, 582
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 3 cut(s) 544, 576, 595
BstSCI CCNGG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 307
BstV2I GAAGAC 3 cut(s) 50, 278, 555
BtsCI GGATG 3 cut(s) 19, 68, 94
BveI ACCTGC 1 cut(s) 549
Cac8I GCNNGC 1 cut(s) 597
CaiI CAGNNNCTG 2 cut(s) 59, 323
Cfr13I GGNCC 1 cut(s) 283
Csp6I GTAC 3 cut(s) 140, 589, 645
CviAII CATG 7 cut(s) 343, 375, 433, 541, 573, 592, 658
CviQI GTAC 3 cut(s) 140, 589, 645
DdeI CTNAG 4 cut(s) 60, 264, 300, 368
DpnI GATC 5 cut(s) 327, 373, 381, 489, 606
DpnII GATC 5 cut(s) 325, 371, 379, 487, 604
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 287, 638
Eco24I GRGCYC 3 cut(s) 299, 363, 614
Eco47I GGWCC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 2 cut(s) 287, 638
EcoT38I GRGCYC 3 cut(s) 299, 363, 614
ErhI CCWWGG 2 cut(s) 287, 638
FaeI CATG 7 cut(s) 346, 378, 436, 544, 576, 595, 661
FaqI GGGAC 3 cut(s) 249, 296, 424
FatI CATG 7 cut(s) 342, 374, 432, 540, 572, 591, 657
FbaI TGATCA 4 cut(s) 325, 379, 487, 604
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 3 cut(s) 6, 55, 101
FriOI GRGCYC 3 cut(s) 299, 363, 614
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 3 cut(s) 185, 350, 387
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 377
Hin1II CATG 7 cut(s) 346, 378, 436, 544, 576, 595, 661
HinfI GANTC 4 cut(s) 56, 190, 262, 437
HphI GGTGA 3 cut(s) 173, 482, 559
Hpy166II GTNNAC 1 cut(s) 645
Hpy188I TCNGA 5 cut(s) 61, 124, 267, 400, 609
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 1 cut(s) 645
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 2 cut(s) 102, 130
HpyCH4V TGCA 3 cut(s) 558, 585, 595
HpyF10VI GCNNNNNNNGC 3 cut(s) 534, 550, 582
HpyF3I CTNAG 4 cut(s) 60, 264, 300, 368
HpySE526I ACGT 2 cut(s) 102, 130
Hsp92II CATG 7 cut(s) 346, 378, 436, 544, 576, 595, 661
KflI GGGWCCC 1 cut(s) 283
Ksp22I TGATCA 4 cut(s) 325, 379, 487, 604
Kzo9I GATC 5 cut(s) 325, 371, 379, 487, 604
LmnI GCTCC 2 cut(s) 294, 358
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 2 cut(s) 206, 540
MaeI CTAG 3 cut(s) 185, 350, 387
MaeII ACGT 2 cut(s) 102, 130
MalI GATC 5 cut(s) 327, 373, 381, 489, 606
MboI GATC 5 cut(s) 325, 371, 379, 487, 604
MboII GAAGA 4 cut(s) 55, 283, 555, 616
MhlI GDGCHC 3 cut(s) 299, 363, 614
MluCI AATT 6 cut(s) 64, 157, 394, 469, 580, 628
MlyI GAGTC 4 cut(s) 50, 184, 256, 446
MnlI CCTC 5 cut(s) 33, 230, 285, 539, 632
MseI TTAA 2 cut(s) 105, 664
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 534, 550, 582
NdeII GATC 5 cut(s) 325, 371, 379, 487, 604
NlaIII CATG 7 cut(s) 346, 378, 436, 544, 576, 595, 661
NlaIV GGNNCC 3 cut(s) 284, 285, 296
NspI RCATGY 3 cut(s) 544, 576, 595
PflMI CCANNNNNTGG 1 cut(s) 544
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 4 cut(s) 50, 184, 256, 445
PpsI GAGTC 4 cut(s) 50, 184, 256, 445
PpuMI RGGWCCY 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 363
Psp1406I AACGTT 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 3 cut(s) 284, 285, 296
PspPI GGNCC 1 cut(s) 283
PspPPI RGGWCCY 1 cut(s) 283
PstNI CAGNNNCTG 2 cut(s) 59, 323
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 3 cut(s) 141, 590, 646
RsaNI GTAC 3 cut(s) 140, 589, 645
RseI CAYNNNNRTG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 105, 664
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 5 cut(s) 325, 371, 379, 487, 604
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 4 cut(s) 50, 184, 256, 446
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 3 cut(s) 299, 363, 614
SfaNI GCATC 2 cut(s) 206, 540
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 2 cut(s) 418, 530
SmoI CTYRAG 2 cut(s) 418, 530
Sse9I AATT 6 cut(s) 64, 157, 394, 469, 580, 628
SspI AATATT 1 cut(s) 109
SspMI CTAG 3 cut(s) 185, 350, 387
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 2 cut(s) 287, 638
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 2 cut(s) 105, 133
TaqI TCGA 1 cut(s) 222
TasI AATT 6 cut(s) 64, 157, 394, 469, 580, 628
TatI WGTACW 1 cut(s) 588
Tru1I TTAA 2 cut(s) 105, 664
Tru9I TTAA 2 cut(s) 105, 664
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 4 cut(s) 57, 284, 421, 646
Van91I CCANNNNNTGG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 2 cut(s) 64, 157
XceI RCATGY 3 cut(s) 544, 576, 595
XspI CTAG 3 cut(s) 185, 350, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.