pycom15g33000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012040
Physical Location & Seq
Forward (+)
32336580 .. 32337400
821 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g33000.1

Sequence Viewer

Length: 630 bp
ATGCTTTCTTTTCAAGCTCATCCTCTTTCTCCAAACCAAAAGAAGACAATCCCAGATTCTGAGAATTCATCCAAGAAAAGGAAATGGGACGACGAGCCATACGTTAATATTGAGCAACTTTCCGAAAAACGTTCAAAAGTACCACAATGCAAACCAAATTCCTTGTTTGATATTGAGCTTCACCTAGAGACTCCATTGCCTTCGGAGTGGCAAAGATGCCTCGATATTCAGTCGGGACAGATACATTTTTACAACACAAGGACTCAGATGAAGACTTCAAGGGACCCAAGGAGGAGCCCTGAGCCACCAACCAGTCCAGCTCTCAACCTAAGATCATGTGATCAGTCTAGAGCTAATTCAGACATTTCAACACACAGCTTGAGTGATTTGTTCATGGAGTCCCATAGACCAATACAAAAGAACCCTAATAATTTAGGGTTTCCAGTTGATCGCCACCACCAGCAGCAGCAGGAGATGGTGGCAACTGTGTGCATCAAGTGCCACATGCTGGTGATGCTGTGCAGGTCTTCTCCTGCATGCCCTAATTGCAAGTACATGCACGCACCTGATCAGAGCCCCCCAACCCTATTCAATTTCAAGCCAAGGTGTACTAGTAGCTTCATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

24.09

Weight (kDa)

8.69

Isoelectric Point (pI)

84.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22250 AT1G78170 AT4G08910
fragaria_vesca FvH4_5g37370
malus_domestica MD08G1182400.v1.1 MD15G1368100.v1.1
prunus_persica Prupe.1G516300_v2.0.a1
pyrus_communis pycom08g15620 pycom15g33000
rosa_chinensis RchiOBHm_Chr7g0239041
rosa_laevigata RLG00000000788
rosa_multiflora Rmu_sc0005651.1_g000002
rosa_roxburghii Rroxscaffold_3G00221340
rosa_rugosa Rorug07G0324800
rosa_samantha Rh7AG479700 Rh7BG452500 Rh7CG497200 Rh7DG464700
rosa_wichuraiana Rw7G040110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 513
AccB7I CCANNNNNTGG 1 cut(s) 508
AclI AACGTT 1 cut(s) 130
AcsI RAATTY 2 cut(s) 64, 157
AfaI GTAC 3 cut(s) 141, 554, 610
AfiI CCNNNNNNNGG 2 cut(s) 78, 508
AgsI TTSAA 6 cut(s) 14, 135, 279, 369, 592, 598
AhlI ACTAGT 1 cut(s) 611
AluBI AGCT 6 cut(s) 17, 178, 320, 353, 378, 618
AluI AGCT 6 cut(s) 17, 178, 320, 353, 378, 618
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 463, 466
ApoI RAATTY 2 cut(s) 64, 157
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 173, 523
AvaII GGWCC 1 cut(s) 283
BanII GRGCYC 2 cut(s) 299, 578
BbsI GAAGAC 3 cut(s) 50, 278, 519
BbvI GCAGC 2 cut(s) 475, 478
BccI CCATC 1 cut(s) 469
BclI TGATCA 2 cut(s) 340, 568
BcoDI GTCTC 1 cut(s) 182
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 3 cut(s) 185, 348, 612
BfuAI ACCTGC 1 cut(s) 513
BisI GCNGC 2 cut(s) 464, 467
BlsI GCNGC 2 cut(s) 465, 468
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 3 cut(s) 284, 285, 296
BmsI GCATC 3 cut(s) 206, 501, 504
BpiI GAAGAC 3 cut(s) 50, 278, 519
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 287, 602
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 508
Bse1I ACTGG 2 cut(s) 312, 443
Bse3DI GCAATG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 287, 602
BseGI GGATG 2 cut(s) 19, 68
BseLI CCNNNNNNNGG 2 cut(s) 78, 508
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 3 cut(s) 51, 278, 291
BseNI ACTGG 2 cut(s) 312, 443
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 2 cut(s) 475, 478
BsgI GTGCAG 1 cut(s) 541
BslFI GGGAC 4 cut(s) 101, 249, 296, 385
BslI CCNNNNNNNGG 2 cut(s) 78, 508
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 4 cut(s) 101, 249, 296, 385
Bsp1286I GDGCHC 2 cut(s) 299, 578
Bsp143I GATC 4 cut(s) 332, 340, 448, 568
BspCNI CTCAG 3 cut(s) 52, 277, 292
BspLI GGNNCC 3 cut(s) 284, 285, 296
BspMI ACCTGC 1 cut(s) 513
BsrDI GCAATG 1 cut(s) 194
BsrI ACTGG 2 cut(s) 312, 443
BssECI CCNNGG 2 cut(s) 287, 602
BssMI GATC 4 cut(s) 332, 340, 448, 568
BssT1I CCWWGG 2 cut(s) 287, 602
Bst4CI ACNGT 1 cut(s) 487
BstAPI GCANNNNNTGC 1 cut(s) 498
BstC8I GCNNGC 2 cut(s) 538, 561
BstDEI CTNAG 4 cut(s) 60, 264, 300, 329
BstF5I GGATG 2 cut(s) 19, 68
BstKTI GATC 4 cut(s) 335, 343, 451, 571
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 4 cut(s) 332, 340, 448, 568
BstMWI GCNNNNNNNGC 3 cut(s) 498, 514, 546
BstNSI RCATGY 3 cut(s) 508, 540, 559
BstV1I GCAGC 2 cut(s) 475, 478
BstV2I GAAGAC 3 cut(s) 50, 278, 519
BtsCI GGATG 2 cut(s) 19, 68
BveI ACCTGC 1 cut(s) 513
Cac8I GCNNGC 2 cut(s) 538, 561
CaiI CAGNNNCTG 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 283
Csp6I GTAC 3 cut(s) 140, 553, 609
CviAII CATG 6 cut(s) 336, 394, 505, 537, 556, 622
CviQI GTAC 3 cut(s) 140, 553, 609
DdeI CTNAG 4 cut(s) 60, 264, 300, 329
DpnI GATC 4 cut(s) 334, 342, 450, 570
DpnII GATC 4 cut(s) 332, 340, 448, 568
Eco130I CCWWGG 2 cut(s) 287, 602
Eco24I GRGCYC 2 cut(s) 299, 578
Eco47I GGWCC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 287, 602
EcoT38I GRGCYC 2 cut(s) 299, 578
ErhI CCWWGG 2 cut(s) 287, 602
FaeI CATG 6 cut(s) 339, 397, 508, 540, 559, 625
FaiI YATR 8 cut(s) 100, 337, 395, 405, 506, 538, 557, 623
FaqI GGGAC 4 cut(s) 101, 249, 296, 385
FatI CATG 6 cut(s) 335, 393, 504, 536, 555, 621
FbaI TGATCA 2 cut(s) 340, 568
Fnu4HI GCNGC 2 cut(s) 464, 467
FokI GGATG 2 cut(s) 6, 55
FriOI GRGCYC 2 cut(s) 299, 578
Fsp4HI GCNGC 2 cut(s) 464, 467
FspBI CTAG 3 cut(s) 185, 348, 612
GluI GCNGC 2 cut(s) 464, 467
Hin1II CATG 6 cut(s) 339, 397, 508, 540, 559, 625
HinfI GANTC 4 cut(s) 56, 190, 262, 398
HphI GGTGA 2 cut(s) 173, 523
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 6 cut(s) 61, 124, 205, 267, 361, 573
Hpy188III TCNNGA 2 cut(s) 234, 348
Hpy8I GTNNAC 1 cut(s) 609
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 2 cut(s) 102, 130
HpyCH4V TGCA 6 cut(s) 150, 492, 522, 536, 549, 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 498, 514, 546
HpyF3I CTNAG 4 cut(s) 60, 264, 300, 329
HpySE526I ACGT 2 cut(s) 102, 130
Hsp92II CATG 6 cut(s) 339, 397, 508, 540, 559, 625
KflI GGGWCCC 1 cut(s) 283
Ksp22I TGATCA 2 cut(s) 340, 568
Kzo9I GATC 4 cut(s) 332, 340, 448, 568
LmnI GCTCC 1 cut(s) 294
Lsp1109I GCAGC 2 cut(s) 475, 478
LweI GCATC 3 cut(s) 206, 501, 504
MaeI CTAG 3 cut(s) 185, 348, 612
MaeII ACGT 2 cut(s) 102, 130
MalI GATC 4 cut(s) 334, 342, 450, 570
MboI GATC 4 cut(s) 332, 340, 448, 568
MboII GAAGA 3 cut(s) 55, 283, 519
MhlI GDGCHC 2 cut(s) 299, 578
MluCI AATT 6 cut(s) 64, 157, 355, 430, 544, 592
MlyI GAGTC 3 cut(s) 184, 256, 407
MnlI CCTC 3 cut(s) 33, 230, 285
MseI TTAA 2 cut(s) 105, 628
MslI CAYNNNNRTG 1 cut(s) 509
MwoI GCNNNNNNNGC 3 cut(s) 498, 514, 546
NdeII GATC 4 cut(s) 332, 340, 448, 568
NlaIII CATG 6 cut(s) 339, 397, 508, 540, 559, 625
NlaIV GGNNCC 3 cut(s) 284, 285, 296
NspI RCATGY 3 cut(s) 508, 540, 559
PaeI GCATGC 1 cut(s) 540
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 508
PkrI GCNGC 2 cut(s) 465, 468
PleI GAGTC 3 cut(s) 184, 256, 406
PpsI GAGTC 3 cut(s) 184, 256, 406
PpuMI RGGWCCY 1 cut(s) 283
Psp1406I AACGTT 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 283
PspN4I GGNNCC 3 cut(s) 284, 285, 296
PspPI GGNCC 1 cut(s) 283
PspPPI RGGWCCY 1 cut(s) 283
PstNI CAGNNNCTG 1 cut(s) 59
RsaI GTAC 3 cut(s) 141, 554, 610
RsaNI GTAC 3 cut(s) 140, 553, 609
RseI CAYNNNNRTG 1 cut(s) 509
SaqAI TTAA 2 cut(s) 105, 628
SatI GCNGC 2 cut(s) 464, 467
Sau3AI GATC 4 cut(s) 332, 340, 448, 568
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 3 cut(s) 184, 256, 407
SduI GDGCHC 2 cut(s) 299, 578
SfaNI GCATC 3 cut(s) 206, 501, 504
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
SpeI ACTAGT 1 cut(s) 611
SphI GCATGC 1 cut(s) 540
Sse9I AATT 6 cut(s) 64, 157, 355, 430, 544, 592
SspI AATATT 1 cut(s) 109
SspMI CTAG 3 cut(s) 185, 348, 612
StyI CCWWGG 2 cut(s) 287, 602
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 2 cut(s) 105, 133
TaqI TCGA 1 cut(s) 222
TasI AATT 6 cut(s) 64, 157, 355, 430, 544, 592
TatI WGTACW 2 cut(s) 552, 608
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 105, 628
Tru9I TTAA 2 cut(s) 105, 628
TseI GCWGC 2 cut(s) 463, 466
TspDTI ATGAA 4 cut(s) 57, 284, 382, 610
Van91I CCANNNNNTGG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 2 cut(s) 64, 157
XbaI TCTAGA 1 cut(s) 347
XceI RCATGY 3 cut(s) 508, 540, 559
XspI CTAG 3 cut(s) 185, 348, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.