Rroxscaffold_3G00221340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012040
Physical Location & Seq
Forward (+)
4165338 .. 4166610
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221340.1

Sequence Viewer

Length: 639 bp
ATGGTGTCTTTTCAAGCTCAACCCCTTTCACCAAACCAGAAGAAATCAATCCCAGACTCAGAGATTTCATCCAAGAAGAGAAAGTGGGATAACCCTTTTCCTTTTGTGGAACAACTGCTCGAAAAGCGTCCGAAACCAGCTGATCAAATCAGACCAAAGTCCTTTTTTGATGTTGAGCTCCACCTCGAGACTCCATTGCCTTTGGAGTGGCAACGATGCCTTGATATTCAGTCGGGCCAGATACACTTTTACAACACAAGGACACAGATGAAGACTTCAAGGGATCCCAGGAGGAGTACGCCTGAGCCACCAACAACTAATCACATGAGCTTAGACCTTGAGCTCAACCTGAGATGCGACTCCAAGCCTCATTCAAACATATCAGCAAACAGCTTCGGGGAACTTTTCAAGAACAACTCATCAAGGTTGGGACTTGATCAACTTGATCATGACCAAGAGATGGTGGCAACTGTGTGCATGAGGTGTCACATGTTGGTCATGCTGTGCAAGTCTTCACCTGCATGCCCAAATTGCAAGTATATGCACACAACCGATCAGAGCCCCTCAACCCTATTCAAGCCAATGAGTCAAGGTCATGTAGCTTCATCATGTGCTAGTAAGATCAAAGCCTGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.31

Weight (kDa)

8.77

Isoelectric Point (pI)

66.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22250 AT1G78170 AT4G08910
fragaria_vesca FvH4_5g37370
malus_domestica MD08G1182400.v1.1 MD15G1368100.v1.1
prunus_persica Prupe.1G516300_v2.0.a1
pyrus_communis pycom08g15620 pycom15g33000
rosa_chinensis RchiOBHm_Chr7g0239041
rosa_laevigata RLG00000000788
rosa_multiflora Rmu_sc0005651.1_g000002
rosa_roxburghii Rroxscaffold_3G00221340
rosa_rugosa Rorug07G0324800
rosa_samantha Rh7AG479700 Rh7BG452500 Rh7CG497200 Rh7DG464700
rosa_wichuraiana Rw7G040110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
Acc36I ACCTGC 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 460
AclWI GGATC 2 cut(s) 278, 291
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 460
AflIII ACRYGT 1 cut(s) 489
AgsI TTSAA 5 cut(s) 14, 279, 375, 409, 577
AjnI CCWGG 2 cut(s) 287, 629
AluBI AGCT 7 cut(s) 17, 140, 178, 330, 343, 393, 602
AluI AGCT 7 cut(s) 17, 140, 178, 330, 343, 393, 602
Alw21I GWGCWC 2 cut(s) 180, 345
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 2 cut(s) 278, 291
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 21, 507
AvaI CYCGRG 1 cut(s) 185
BamHI GGATCC 1 cut(s) 283
BanII GRGCYC 3 cut(s) 180, 345, 563
BbsI GAAGAC 2 cut(s) 278, 504
Bbv12I GWGCWC 2 cut(s) 180, 345
BccI CCATC 1 cut(s) 454
BciT130I CCWGG 2 cut(s) 289, 631
BclI TGATCA 3 cut(s) 142, 436, 445
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 615
BfuAI ACCTGC 1 cut(s) 526
Bme1390I CCNGG 2 cut(s) 289, 631
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 289, 631
BmsI GCATC 2 cut(s) 206, 344
BoxI GACNNNNGTC 1 cut(s) 157
BpiI GAAGAC 2 cut(s) 278, 504
Bpu10I CCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse3DI GCAATG 1 cut(s) 194
BseBI CCWGG 2 cut(s) 289, 631
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 3 cut(s) 72, 294, 341
BseRI GAGGAG 1 cut(s) 307
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 2 cut(s) 180, 345
BsiHKCI CYCGRG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 3 cut(s) 180, 345, 563
Bsp143I GATC 6 cut(s) 142, 283, 436, 445, 553, 621
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 3 cut(s) 71, 295, 342
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 2 cut(s) 278, 291
BsrDI GCAATG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 6 cut(s) 142, 283, 436, 445, 553, 621
Bst2UI CCWGG 2 cut(s) 289, 631
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 4 cut(s) 58, 303, 331, 350
BstF5I GGATG 1 cut(s) 68
BstKTI GATC 6 cut(s) 145, 286, 439, 448, 556, 624
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 6 cut(s) 142, 283, 436, 445, 553, 621
BstMWI GCNNNNNNNGC 2 cut(s) 124, 531
BstNI CCWGG 2 cut(s) 289, 631
BstNSI RCATGY 2 cut(s) 493, 525
BstPAI GACNNNNGTC 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 287, 629
BstV2I GAAGAC 2 cut(s) 278, 504
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 68
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 523
CciI TCATGA 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 297
CviAII CATG 8 cut(s) 325, 449, 478, 490, 499, 522, 596, 609
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 4 cut(s) 58, 303, 331, 350
DpnI GATC 6 cut(s) 144, 285, 438, 447, 555, 623
DpnII GATC 6 cut(s) 142, 283, 436, 445, 553, 621
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Ecl136II GAGCTC 2 cut(s) 178, 343
Eco24I GRGCYC 3 cut(s) 180, 345, 563
Eco53kI GAGCTC 2 cut(s) 178, 343
Eco88I CYCGRG 1 cut(s) 185
EcoICRI GAGCTC 2 cut(s) 178, 343
EcoRII CCWGG 2 cut(s) 287, 629
EcoT38I GRGCYC 3 cut(s) 180, 345, 563
FaeI CATG 8 cut(s) 328, 452, 481, 493, 502, 525, 599, 612
FaqI GGGAC 1 cut(s) 444
FatI CATG 8 cut(s) 324, 448, 477, 489, 498, 521, 595, 608
FbaI TGATCA 3 cut(s) 142, 436, 445
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 3 cut(s) 180, 345, 563
FspBI CTAG 1 cut(s) 615
HaeIII GGCC 1 cut(s) 237
HgaI GACGC 1 cut(s) 116
Hin1II CATG 8 cut(s) 328, 452, 481, 493, 502, 525, 599, 612
HinfI GANTC 4 cut(s) 56, 190, 359, 586
HphI GGTGA 2 cut(s) 21, 507
Hpy188I TCNGA 4 cut(s) 61, 132, 152, 558
Hpy188III TCNNGA 3 cut(s) 187, 409, 449
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4V TGCA 5 cut(s) 477, 507, 521, 534, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 531
HpyF3I CTNAG 4 cut(s) 58, 303, 331, 350
Hsp92II CATG 8 cut(s) 328, 452, 481, 493, 502, 525, 599, 612
Ksp22I TGATCA 3 cut(s) 142, 436, 445
Kzo9I GATC 6 cut(s) 142, 283, 436, 445, 553, 621
LmnI GCTCC 1 cut(s) 183
LweI GCATC 2 cut(s) 206, 344
MaeI CTAG 1 cut(s) 615
MaeIII GTNAC 1 cut(s) 485
MalI GATC 6 cut(s) 144, 285, 438, 447, 555, 623
MboI GATC 6 cut(s) 142, 283, 436, 445, 553, 621
MboII GAAGA 4 cut(s) 52, 88, 283, 504
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 3 cut(s) 180, 345, 563
MluCI AATT 1 cut(s) 529
MlyI GAGTC 4 cut(s) 50, 184, 353, 595
MnlI CCTC 5 cut(s) 194, 285, 378, 474, 574
MslI CAYNNNNRTG 1 cut(s) 520
MspA1I CMGCKG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 289, 631
MvaI CCWGG 2 cut(s) 289, 631
MwoI GCNNNNNNNGC 2 cut(s) 124, 531
NdeII GATC 6 cut(s) 142, 283, 436, 445, 553, 621
NlaIII CATG 8 cut(s) 328, 452, 481, 493, 502, 525, 599, 612
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 485
NspI RCATGY 2 cut(s) 493, 525
PaeI GCATGC 1 cut(s) 525
PaeR7I CTCGAG 1 cut(s) 185
PagI TCATGA 1 cut(s) 448
PaqCI CACCTGC 1 cut(s) 526
PciI ACATGT 1 cut(s) 489
PflMI CCANNNNNTGG 1 cut(s) 460
PleI GAGTC 4 cut(s) 50, 184, 353, 594
PpsI GAGTC 4 cut(s) 50, 184, 353, 594
PscI ACATGT 1 cut(s) 489
PshAI GACNNNNGTC 1 cut(s) 157
Psp124BI GAGCTC 2 cut(s) 180, 345
Psp6I CCWGG 2 cut(s) 287, 629
PspGI CCWGG 2 cut(s) 287, 629
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 235
PsuI RGATCY 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 520
SacI GAGCTC 2 cut(s) 180, 345
Sau3AI GATC 6 cut(s) 142, 283, 436, 445, 553, 621
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 4 cut(s) 50, 184, 353, 595
ScrFI CCNGG 2 cut(s) 289, 631
SduI GDGCHC 3 cut(s) 180, 345, 563
SfaNI GCATC 2 cut(s) 206, 344
Sfr274I CTCGAG 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 520
SmlI CTYRAG 2 cut(s) 185, 338
SmoI CTYRAG 2 cut(s) 185, 338
SphI GCATGC 1 cut(s) 525
Sse9I AATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 615
SstI GAGCTC 2 cut(s) 180, 345
StyD4I CCNGG 2 cut(s) 287, 629
TaaI ACNGT 1 cut(s) 472
TaqI TCGA 2 cut(s) 120, 186
TasI AATT 1 cut(s) 529
TseFI GTSAC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 3 cut(s) 57, 284, 594
Van91I CCANNNNNTGG 1 cut(s) 460
XceI RCATGY 2 cut(s) 493, 525
XhoI CTCGAG 1 cut(s) 185
XspI CTAG 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.