FvH4_5g37610

Annexin D1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014753
Physical Location & Seq
Forward (+)
27685634 .. 27688473
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37610.t1

Sequence Viewer

Length: 951 bp
ATGTCCACCCTTGCAGTCCCAGCACAAGTTCCTTCTCCGGCCGAAGACTCCGAGCAGCTCAAGAAAGCCTTCAAAGGATGGGGAACCAATGAGGACTTGATCATATCCATCGTGGGGCATAGAAATGCTGCTCAAAGAAAGGCTATCCGGAAAACCTATGCCGAAACTTATGGAGAGGATCTCCTCAAAGATTTGGACAAAGAACTTTCAAACGACTTTGAGAGGATTGTTATGCTTTGGACTCTTGATCCTGCTGAGCGTGACGCATTTTTAGCCAATGAGGCAACGAAGAAGTGGACTTCAAGCAATCAGGTTCTTGCTGAAATAGCCTGCTCTAGGTCATCATATGGCCTACTTTTGGCAAAGCAGGAATATCATTCTCGCTACAAGAAGTCCCTTGAAGAGGATGTTGCTCATCACACAACTGGAGATTTCCGAAAGCTTTTGGTACCTCTTGTCAGCTCATATAGATATGAAGGATATGAGGTGAACATGACTCTGGCAAAATCAGAGGCTAAGCTACTCCATGAAAGGATCTCCGACAAAGAATATAATCATGAGGATATCATCAGGATTTTGGCTACACGTAGCAAAGCTCAGATCAATGCAACTCTGAACCACTACAAAAATGAATTCGGGAATGATATCAATAAGGATTTGAAAGCTGACCCCAAGGATGAGTACCTTGCAATACTAAGGTCTACAATCAAGTGCTTGATCCGCCCTGAGAAGTACTTCGAGAAGTCTCTTCGTTTGGCAATCAACAGACTAGGAACGGATGAAGGGGCTCTCACCAGAGTTGTTGCTACAAGGGCTGAGGTTGACCTGAAGATCATAAAGGAGGAGTACCACAAGAGGAATAGTGTCACTCTTGATCAAGCCATTAAGAAAGACACTCGTGGAGATTACGAGGCAATGCTACTGGCCCTGCTTGGACATGAGAATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

317

Amino Acids

36.07

Weight (kDa)

6.78

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 16 - 79 1.3e-22 Annexin
Annexin PF00191 88 - 152 4.4e-16 Annexin
Annexin PF00191 171 - 228 5.1e-13 Annexin
Annexin PF00191 245 - 310 1.8e-17 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014753)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37610
malus_domestica MD08G1182000.v1.1 MD15G1367300.v1.1
prunus_persica Prupe.1G515200_v2.0.a1
pyrus_communis pycom08g15520 pycom15g32930
rosa_chinensis RchiOBHm_Chr7g0239291
rosa_laevigata RLG00000000766
rosa_multiflora Rmu_sc0007840.1_g000005 Rmu_sc0026864.1_g000001
rosa_roxburghii Rroxscaffold_3G00221050
rosa_rugosa Rorug07G0327100
rosa_samantha Rh7AG480400 Rh7BG453100 Rh7CG498300 Rh7DG466400
rosa_wichuraiana Rw7G040240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 448
AccI GTMKAC 1 cut(s) 701
AccIII TCCGGA 1 cut(s) 147
AciI CCGC 1 cut(s) 721
AclWI GGATC 4 cut(s) 186, 242, 542, 712
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 1 cut(s) 848
AfaI GTAC 4 cut(s) 450, 683, 734, 848
AfiI CCNNNNNNNGG 4 cut(s) 114, 336, 358, 403
AflIII ACRYGT 1 cut(s) 584
AgsI TTSAA 5 cut(s) 73, 210, 303, 401, 661
AluBI AGCT 6 cut(s) 58, 442, 462, 520, 596, 665
AluI AGCT 6 cut(s) 58, 442, 462, 520, 596, 665
Alw26I GTCTC 1 cut(s) 750
AlwI GGATC 4 cut(s) 186, 242, 542, 712
Aor13HI TCCGGA 1 cut(s) 147
AoxI GGCC 3 cut(s) 39, 349, 924
ApeKI GCWGC 2 cut(s) 55, 128
ApoI RAATTY 1 cut(s) 632
Asp700I GAANNNNTTC 2 cut(s) 68, 734
Asp718I GGTACC 1 cut(s) 448
AspS9I GGNCC 1 cut(s) 925
AsuHPI GGTGA 2 cut(s) 499, 784
BanI GGYRCC 1 cut(s) 448
BanII GRGCYC 1 cut(s) 790
BauI CACGAG 1 cut(s) 897
BbsI GAAGAC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 816
BbvI GCAGC 2 cut(s) 67, 115
BccI CCATC 2 cut(s) 72, 116
BclI TGATCA 2 cut(s) 99, 874
BcoDI GTCTC 1 cut(s) 750
BfaI CTAG 2 cut(s) 336, 770
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 2 cut(s) 56, 129
BlpI GCTNAGC 2 cut(s) 255, 516
BlsI GCNGC 2 cut(s) 57, 130
BmcAI AGTACT 1 cut(s) 734
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 2 cut(s) 85, 450
BpiI GAAGAC 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 1 cut(s) 447
Bpu10I CCTNAGC 1 cut(s) 816
Bpu1102I GCTNAGC 2 cut(s) 255, 516
BpuEI CTTGAG 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 672
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 336, 358, 403
Bse1I ACTGG 2 cut(s) 430, 927
Bse3DI GCAATG 1 cut(s) 921
BseAI TCCGGA 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 672
BseGI GGATG 4 cut(s) 83, 412, 682, 784
BseLI CCNNNNNNNGG 4 cut(s) 114, 336, 358, 403
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 4 cut(s) 246, 611, 717, 807
BseNI ACTGG 2 cut(s) 430, 927
BseRI GAGGAG 2 cut(s) 173, 857
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 67, 115
BseYI CCCAGC 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 3 cut(s) 41, 351, 926
BshNI GGYRCC 1 cut(s) 448
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 2 cut(s) 38, 148
BslFI GGGAC 2 cut(s) 2, 379
BslI CCNNNNNNNGG 4 cut(s) 114, 336, 358, 403
BsmAI GTCTC 1 cut(s) 750
BsmFI GGGAC 2 cut(s) 2, 379
BsmI GAATGC 1 cut(s) 949
BsnI GGCC 3 cut(s) 41, 351, 926
Bsp1286I GDGCHC 1 cut(s) 790
Bsp13I TCCGGA 1 cut(s) 147
Bsp143I GATC 8 cut(s) 99, 178, 247, 534, 600, 717, 831, 874
Bsp1720I GCTNAGC 2 cut(s) 255, 516
BspACI CCGC 1 cut(s) 721
BspANI GGCC 3 cut(s) 41, 351, 926
BspCNI CTCAG 4 cut(s) 247, 610, 718, 808
BspEI TCCGGA 1 cut(s) 147
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 2 cut(s) 85, 450
BspPI GGATC 4 cut(s) 186, 242, 542, 712
BspT107I GGYRCC 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 921
BsrI ACTGG 2 cut(s) 430, 927
BssECI CCNNGG 1 cut(s) 672
BssMI GATC 8 cut(s) 99, 178, 247, 534, 600, 717, 831, 874
BssSI CACGAG 1 cut(s) 897
BssT1I CCWWGG 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 897
Bst6I CTCTTC 2 cut(s) 396, 753
BstBAI YACGTR 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 6 cut(s) 255, 516, 597, 695, 726, 816
BstENI CCTNNNNNAGG 2 cut(s) 334, 401
BstF5I GGATG 4 cut(s) 83, 412, 682, 784
BstKTI GATC 8 cut(s) 102, 181, 250, 537, 603, 720, 834, 877
BstMAI GTCTC 1 cut(s) 750
BstMBI GATC 8 cut(s) 99, 178, 247, 534, 600, 717, 831, 874
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 6 cut(s) 20, 272, 281, 326, 720, 812
BstV1I GCAGC 2 cut(s) 67, 115
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 178, 534
BstYI RGATCY 2 cut(s) 178, 534
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 3 cut(s) 41, 351, 926
BtsCI GGATG 4 cut(s) 83, 412, 682, 784
Cac8I GCNNGC 1 cut(s) 331
CciI TCATGA 1 cut(s) 556
Cfr13I GGNCC 1 cut(s) 925
CseI GACGC 1 cut(s) 272
Csp6I GTAC 4 cut(s) 449, 682, 733, 847
CviAII CATG 4 cut(s) 493, 527, 557, 938
CviQI GTAC 4 cut(s) 449, 682, 733, 847
DdeI CTNAG 6 cut(s) 255, 516, 597, 695, 726, 816
DpnI GATC 8 cut(s) 101, 180, 249, 536, 602, 719, 833, 876
DpnII GATC 8 cut(s) 99, 178, 247, 534, 600, 717, 831, 874
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 396, 753
EarI CTCTTC 2 cut(s) 396, 753
EciI GGCGGA 1 cut(s) 710
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 672
Eco24I GRGCYC 1 cut(s) 790
Eco32I GATATC 2 cut(s) 565, 646
Eco52I CGGCCG 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 848
EcoNI CCTNNNNNAGG 2 cut(s) 334, 401
EcoRI GAATTC 1 cut(s) 632
EcoRV GATATC 2 cut(s) 565, 646
EcoT14I CCWWGG 1 cut(s) 672
EcoT22I ATGCAT 1 cut(s) 949
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 4 cut(s) 496, 530, 560, 941
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 2 cut(s) 2, 379
FatI CATG 4 cut(s) 492, 526, 556, 937
FauNDI CATATG 1 cut(s) 346
FbaI TGATCA 2 cut(s) 99, 874
FblI GTMKAC 1 cut(s) 701
Fnu4HI GCNGC 2 cut(s) 56, 129
FokI GGATG 4 cut(s) 90, 419, 689, 791
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 2 cut(s) 56, 129
FspBI CTAG 2 cut(s) 336, 770
GluI GCNGC 2 cut(s) 56, 129
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 3 cut(s) 41, 351, 926
HapII CCGG 2 cut(s) 38, 148
HgaI GACGC 1 cut(s) 272
Hin1II CATG 4 cut(s) 496, 530, 560, 941
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 3 cut(s) 47, 241, 496
HpaII CCGG 2 cut(s) 38, 148
HphI GGTGA 2 cut(s) 499, 784
Hpy166II GTNNAC 5 cut(s) 6, 297, 490, 702, 823
Hpy188I TCNGA 6 cut(s) 52, 437, 511, 541, 600, 615
Hpy188III TCNNGA 8 cut(s) 61, 148, 245, 557, 571, 637, 739, 872
Hpy8I GTNNAC 5 cut(s) 6, 297, 490, 702, 823
HpyAV CCTTC 4 cut(s) 42, 79, 470, 776
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 4 cut(s) 14, 608, 689, 947
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 272, 281, 326, 720, 812
HpyF3I CTNAG 6 cut(s) 255, 516, 597, 695, 726, 816
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 4 cut(s) 496, 530, 560, 941
Kpn2I TCCGGA 1 cut(s) 147
KpnI GGTACC 1 cut(s) 452
Ksp22I TGATCA 2 cut(s) 99, 874
Kzo9I GATC 8 cut(s) 99, 178, 247, 534, 600, 717, 831, 874
Lsp1109I GCAGC 2 cut(s) 67, 115
MaeI CTAG 2 cut(s) 336, 770
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 2 cut(s) 260, 865
MalI GATC 8 cut(s) 101, 180, 249, 536, 602, 719, 833, 876
MboI GATC 8 cut(s) 99, 178, 247, 534, 600, 717, 831, 874
MboII GAAGA 5 cut(s) 56, 301, 413, 740, 841
MflI RGATCY 2 cut(s) 178, 534
MhlI GDGCHC 1 cut(s) 790
MluCI AATT 1 cut(s) 632
MlyI GAGTC 3 cut(s) 41, 235, 490
MmeI TCCRAC 1 cut(s) 564
Mph1103I ATGCAT 1 cut(s) 949
MroI TCCGGA 1 cut(s) 147
MroXI GAANNNNTTC 2 cut(s) 68, 734
MseI TTAA 1 cut(s) 885
MslI CAYNNNNRTG 2 cut(s) 123, 942
MspI CCGG 2 cut(s) 38, 148
Mva1269I GAATGC 1 cut(s) 949
MwoI GCNNNNNNNGC 6 cut(s) 20, 272, 281, 326, 720, 812
NdeI CATATG 1 cut(s) 346
NdeII GATC 8 cut(s) 99, 178, 247, 534, 600, 717, 831, 874
NlaIII CATG 4 cut(s) 496, 530, 560, 941
NlaIV GGNNCC 2 cut(s) 85, 450
NmuCI GTSAC 2 cut(s) 260, 865
NsiI ATGCAT 1 cut(s) 949
PagI TCATGA 1 cut(s) 556
PctI GAATGC 1 cut(s) 949
PdmI GAANNNNTTC 2 cut(s) 68, 734
PkrI GCNGC 2 cut(s) 57, 130
PleI GAGTC 3 cut(s) 41, 235, 490
PpsI GAGTC 3 cut(s) 41, 235, 490
Ppu21I YACGTR 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 2 cut(s) 85, 450
PspPI GGNCC 1 cut(s) 925
PsuI RGATCY 2 cut(s) 178, 534
RsaI GTAC 4 cut(s) 450, 683, 734, 848
RsaNI GTAC 4 cut(s) 449, 682, 733, 847
RseI CAYNNNNRTG 2 cut(s) 123, 942
SaqAI TTAA 1 cut(s) 885
SatI GCNGC 2 cut(s) 56, 129
Sau3AI GATC 8 cut(s) 99, 178, 247, 534, 600, 717, 831, 874
Sau96I GGNCC 1 cut(s) 925
ScaI AGTACT 1 cut(s) 734
SchI GAGTC 3 cut(s) 41, 235, 490
SduI GDGCHC 1 cut(s) 790
SmiMI CAYNNNNRTG 2 cut(s) 123, 942
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 632
SsiI CCGC 1 cut(s) 721
SspMI CTAG 2 cut(s) 336, 770
StyI CCWWGG 1 cut(s) 672
TaiI ACGT 1 cut(s) 589
TaqI TCGA 1 cut(s) 738
TasI AATT 1 cut(s) 632
TatI WGTACW 1 cut(s) 732
Tru1I TTAA 1 cut(s) 885
Tru9I TTAA 1 cut(s) 885
TseFI GTSAC 2 cut(s) 260, 865
TseI GCWGC 2 cut(s) 55, 128
Tsp45I GTSAC 2 cut(s) 260, 865
TspDTI ATGAA 4 cut(s) 489, 543, 645, 795
TspGWI ACGGA 1 cut(s) 791
XagI CCTNNNNNAGG 2 cut(s) 334, 401
XapI RAATTY 1 cut(s) 632
XmiI GTMKAC 1 cut(s) 701
XmnI GAANNNNTTC 2 cut(s) 68, 734
XspI CTAG 2 cut(s) 336, 770
ZrmI AGTACT 1 cut(s) 734
Zsp2I ATGCAT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.