Rroxscaffold_3G00221050

Annexin D1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014753
Physical Location & Seq
Reverse (-)
3688629 .. 3691242
2614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221050.1

Sequence Viewer

Length: 951 bp
ATGTCGACCCTTACAGTCCCAGCACAAGTTCCTTCTCCGGCCGAAGACTCCGAGCAGCTCAAAAAAGCCTTAAAAGGATGGGGAACCAATGAGGACTTGATCATATCCATCTTGGGGCATAGAAATGCTTCTCAAAGAAAAGCTATCCGAAAAACTTATGCCGAAACTTATGGAGAAGATCTCCTTAAGGAACTGGACAAAGAACTTACAAGGGACTTTGAGAGGATTGTTATGCTTTGGACGCTTGATCCTGCTGAGCGCGATGCATTTTTAGCCAATGAGGCGACAAAGAAGTGGACTTCAAGCAATCAGGTTCTTGCGGAAATAGCCTGCTCTAGGTCATCACATGGCCTAATTTTGGCAAGGCAGGAATATCATTCTCGCTACAAGAAGTCCCTTGAAGAGGATGTTGCACATCACACAACTGGGGACTTCCGCAAGCTTTTGGTGCCTCTTGTCAGCTCATATAGATATGAGGGAGATGAGGTGAACATGACTCTGGCAAAATCAGAGGCTAAGCTACTCCATGAAAAGATCTCCGACAAAGAATACAATCATGAGGAGATCGTCAGGATTTTGGCTACACGTAGCAAAGCGCAGATCAATGCAACTCTCAATCACTACAAGAATGAGTTTGGTAATGATATCAATAAGGATTTGAAAGCTGACCCCAAGGACGAGTACCTTGCAATTCTAAGGTCCACAATCAAGTGCTTGATCCGCCCTGAGAAGTATTTCGAGAAGTCTCTTCGTCTGGCAATTAACAGACTAGGAACAGATGAAGGTGCTCTCACCAGAGTTGTTGCTACAAGGGCTGAGGTTGACCTGAAGATTATAAAGGAGGAGTACCACAAGAGGAATAGTGTCACTCTGGATCAGGCCATTAAGAAAGACACTCGTGGAGATTATGAATCAATGCTACTGGCCCTGGTTGGACATGAGAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

316

Amino Acids

36.1

Weight (kDa)

6.82

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 16 - 79 3.1e-20 Annexin
Annexin PF00191 88 - 152 8.3e-16 Annexin
Annexin PF00191 171 - 228 1.7e-12 Annexin
Annexin PF00191 245 - 310 9e-18 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014753)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37610
malus_domestica MD08G1182000.v1.1 MD15G1367300.v1.1
prunus_persica Prupe.1G515200_v2.0.a1
pyrus_communis pycom08g15520 pycom15g32930
rosa_chinensis RchiOBHm_Chr7g0239291
rosa_laevigata RLG00000000766
rosa_multiflora Rmu_sc0007840.1_g000005 Rmu_sc0026864.1_g000001
rosa_roxburghii Rroxscaffold_3G00221050
rosa_rugosa Rorug07G0327100
rosa_samantha Rh7AG480400 Rh7BG453100 Rh7CG498300 Rh7DG466400
rosa_wichuraiana Rw7G040240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 836
AccB1I GGYRCC 1 cut(s) 448
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 261
AciI CCGC 3 cut(s) 320, 436, 721
AclWI GGATC 3 cut(s) 242, 712, 882
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 848
AfaI GTAC 2 cut(s) 683, 848
AfiI CCNNNNNNNGG 4 cut(s) 114, 336, 358, 403
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 584
AgsI TTSAA 3 cut(s) 303, 401, 661
AjnI CCWGG 1 cut(s) 927
AluBI AGCT 6 cut(s) 58, 143, 442, 462, 520, 665
AluI AGCT 6 cut(s) 58, 143, 442, 462, 520, 665
Alw21I GWGCWC 1 cut(s) 790
Alw26I GTCTC 1 cut(s) 750
AlwI GGATC 3 cut(s) 242, 712, 882
AoxI GGCC 4 cut(s) 39, 349, 879, 924
ApeKI GCWGC 1 cut(s) 55
Asp700I GAANNNNTTC 2 cut(s) 127, 734
AspLEI GCGC 2 cut(s) 261, 598
AspS9I GGNCC 2 cut(s) 699, 925
AsuHPI GGTGA 2 cut(s) 499, 784
AvaII GGWCC 1 cut(s) 699
BanI GGYRCC 1 cut(s) 448
BauI CACGAG 1 cut(s) 897
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 790
BbvCI CCTCAGC 1 cut(s) 816
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 72, 116
BcgI CGANNNNNNTGC 2 cut(s) 668, 702
BciT130I CCWGG 1 cut(s) 929
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 750
BfaI CTAG 2 cut(s) 336, 770
BfrI CTTAAG 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 281
BglII AGATCT 2 cut(s) 178, 534
BisI GCNGC 1 cut(s) 56
BlpI GCTNAGC 2 cut(s) 255, 516
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 929
Bme18I GGWCC 1 cut(s) 699
BmgT120I GGNCC 2 cut(s) 699, 925
BmiI GGNNCC 2 cut(s) 85, 450
BmrFI CCNGG 1 cut(s) 929
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 165, 197
Bpu10I CCTNAGC 1 cut(s) 816
Bpu1102I GCTNAGC 2 cut(s) 255, 516
BsaAI YACGTR 1 cut(s) 587
BsaJI CCNNGG 2 cut(s) 672, 927
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 336, 358, 403
Bse1I ACTGG 3 cut(s) 198, 430, 927
BseBI CCWGG 1 cut(s) 929
BseDI CCNNGG 2 cut(s) 672, 927
BseGI GGATG 2 cut(s) 83, 412
BseLI CCNNNNNNNGG 4 cut(s) 114, 336, 358, 403
BseMII CTCAG 3 cut(s) 246, 717, 807
BseNI ACTGG 3 cut(s) 198, 430, 927
BseRI GAGGAG 2 cut(s) 575, 857
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 261
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 4 cut(s) 41, 351, 881, 926
BshNI GGYRCC 1 cut(s) 448
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 790
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 4 cut(s) 2, 227, 379, 443
BslI CCNNNNNNNGG 4 cut(s) 114, 336, 358, 403
BsmAI GTCTC 1 cut(s) 750
BsmFI GGGAC 4 cut(s) 2, 227, 379, 443
BsmI GAATGC 1 cut(s) 949
BsnI GGCC 4 cut(s) 41, 351, 881, 926
Bsp1286I GDGCHC 1 cut(s) 790
Bsp143I GATC 8 cut(s) 99, 178, 247, 534, 564, 600, 717, 874
Bsp1720I GCTNAGC 2 cut(s) 255, 516
BspACI CCGC 3 cut(s) 320, 436, 721
BspANI GGCC 4 cut(s) 41, 351, 881, 926
BspCNI CTCAG 3 cut(s) 247, 718, 808
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 2 cut(s) 85, 450
BspPI GGATC 3 cut(s) 242, 712, 882
BspT107I GGYRCC 1 cut(s) 448
BspTI CTTAAG 1 cut(s) 185
BsrI ACTGG 3 cut(s) 198, 430, 927
BssECI CCNNGG 2 cut(s) 672, 927
BssMI GATC 8 cut(s) 99, 178, 247, 534, 564, 600, 717, 874
BssSI CACGAG 1 cut(s) 897
BssT1I CCWWGG 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 897
Bst2UI CCWGG 1 cut(s) 929
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 396, 753
BstAFI CTTAAG 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 331, 440
BstDEI CTNAG 5 cut(s) 255, 516, 695, 726, 816
BstENI CCTNNNNNAGG 2 cut(s) 334, 401
BstF5I GGATG 2 cut(s) 83, 412
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 2 cut(s) 261, 598
BstKTI GATC 8 cut(s) 102, 181, 250, 537, 567, 603, 720, 877
BstMAI GTCTC 1 cut(s) 750
BstMBI GATC 8 cut(s) 99, 178, 247, 534, 564, 600, 717, 874
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 7 cut(s) 241, 272, 281, 326, 448, 720, 812
BstNI CCWGG 1 cut(s) 929
BstSCI CCNGG 1 cut(s) 927
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 178, 534
BstYI RGATCY 2 cut(s) 178, 534
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 4 cut(s) 41, 351, 881, 926
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 83, 412
Cac8I GCNNGC 2 cut(s) 331, 440
CciI TCATGA 1 cut(s) 556
CfoI GCGC 2 cut(s) 261, 598
Cfr13I GGNCC 2 cut(s) 699, 925
CseI GACGC 1 cut(s) 250
Csp6I GTAC 2 cut(s) 682, 847
CviAII CATG 5 cut(s) 347, 493, 527, 557, 938
CviQI GTAC 2 cut(s) 682, 847
DdeI CTNAG 5 cut(s) 255, 516, 695, 726, 816
DpnI GATC 8 cut(s) 101, 180, 249, 536, 566, 602, 719, 876
DpnII GATC 8 cut(s) 99, 178, 247, 534, 564, 600, 717, 874
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 396, 753
EarI CTCTTC 2 cut(s) 396, 753
EciI GGCGGA 1 cut(s) 710
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 672
Eco32I GATATC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 699
Eco52I CGGCCG 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 848
EcoNI CCTNNNNNAGG 2 cut(s) 334, 401
EcoRII CCWGG 1 cut(s) 927
EcoRV GATATC 1 cut(s) 646
EcoT14I CCWWGG 1 cut(s) 672
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 5 cut(s) 350, 496, 530, 560, 941
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 4 cut(s) 2, 227, 379, 443
FatI CATG 5 cut(s) 346, 492, 526, 556, 937
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 2 cut(s) 90, 419
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 2 cut(s) 336, 770
GlaI GCGC 2 cut(s) 260, 597
GluI GCNGC 1 cut(s) 56
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 4 cut(s) 41, 351, 881, 926
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 250
HhaI GCGC 2 cut(s) 261, 598
Hin1II CATG 5 cut(s) 350, 496, 530, 560, 941
Hin6I GCGC 2 cut(s) 259, 596
HinP1I GCGC 2 cut(s) 259, 596
HincII GTYRAC 2 cut(s) 6, 823
HindII GTYRAC 2 cut(s) 6, 823
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 3 cut(s) 47, 496, 911
HpaII CCGG 1 cut(s) 38
HphI GGTGA 2 cut(s) 499, 784
Hpy166II GTNNAC 5 cut(s) 6, 297, 490, 702, 823
Hpy188I TCNGA 4 cut(s) 52, 149, 511, 541
Hpy188III TCNNGA 4 cut(s) 557, 571, 739, 872
Hpy8I GTNNAC 5 cut(s) 6, 297, 490, 702, 823
HpyAV CCTTC 2 cut(s) 42, 776
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 4 cut(s) 266, 413, 608, 689
HpyF10VI GCNNNNNNNGC 7 cut(s) 241, 272, 281, 326, 448, 720, 812
HpyF3I CTNAG 5 cut(s) 255, 516, 695, 726, 816
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 5 cut(s) 350, 496, 530, 560, 941
HspAI GCGC 2 cut(s) 259, 596
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 8 cut(s) 99, 178, 247, 534, 564, 600, 717, 874
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 336, 770
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 1 cut(s) 865
MalI GATC 8 cut(s) 101, 180, 249, 536, 566, 602, 719, 876
MboI GATC 8 cut(s) 99, 178, 247, 534, 564, 600, 717, 874
MboII GAAGA 5 cut(s) 56, 188, 413, 740, 841
MflI RGATCY 2 cut(s) 178, 534
MhlI GDGCHC 1 cut(s) 790
MluCI AATT 3 cut(s) 354, 690, 759
MlyI GAGTC 2 cut(s) 41, 490
MmeI TCCRAC 2 cut(s) 564, 913
Mph1103I ATGCAT 1 cut(s) 268
MroXI GAANNNNTTC 2 cut(s) 127, 734
MseI TTAA 5 cut(s) 71, 186, 762, 885, 949
MslI CAYNNNNRTG 2 cut(s) 123, 942
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 929
Mva1269I GAATGC 1 cut(s) 949
MvaI CCWGG 1 cut(s) 929
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 7 cut(s) 241, 272, 281, 326, 448, 720, 812
NdeII GATC 8 cut(s) 99, 178, 247, 534, 564, 600, 717, 874
NlaIII CATG 5 cut(s) 350, 496, 530, 560, 941
NlaIV GGNNCC 2 cut(s) 85, 450
NmuCI GTSAC 1 cut(s) 865
NsiI ATGCAT 1 cut(s) 268
PagI TCATGA 1 cut(s) 556
PctI GAATGC 1 cut(s) 949
PdmI GAANNNNTTC 2 cut(s) 127, 734
PfeI GAWTC 1 cut(s) 911
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 2 cut(s) 41, 490
PpsI GAGTC 2 cut(s) 41, 490
Ppu21I YACGTR 1 cut(s) 587
PsiI TTATAA 1 cut(s) 836
Psp6I CCWGG 1 cut(s) 927
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 927
PspN4I GGNNCC 2 cut(s) 85, 450
PspPI GGNCC 2 cut(s) 699, 925
PsuI RGATCY 2 cut(s) 178, 534
RsaI GTAC 2 cut(s) 683, 848
RsaNI GTAC 2 cut(s) 682, 847
RseI CAYNNNNRTG 2 cut(s) 123, 942
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 5 cut(s) 71, 186, 762, 885, 949
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 8 cut(s) 99, 178, 247, 534, 564, 600, 717, 874
Sau96I GGNCC 2 cut(s) 699, 925
SchI GAGTC 2 cut(s) 41, 490
ScrFI CCNGG 1 cut(s) 929
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 1 cut(s) 253
SinI GGWCC 1 cut(s) 699
SmiMI CAYNNNNRTG 2 cut(s) 123, 942
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 354, 690, 759
SsiI CCGC 3 cut(s) 320, 436, 721
SspMI CTAG 2 cut(s) 336, 770
StyD4I CCNGG 1 cut(s) 927
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 1 cut(s) 589
TaqI TCGA 2 cut(s) 5, 738
TasI AATT 3 cut(s) 354, 690, 759
TfiI GAWTC 1 cut(s) 911
Tru1I TTAA 5 cut(s) 71, 186, 762, 885, 949
Tru9I TTAA 5 cut(s) 71, 186, 762, 885, 949
TseFI GTSAC 1 cut(s) 865
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 865
TspDTI ATGAA 3 cut(s) 543, 795, 924
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 699
XagI CCTNNNNNAGG 2 cut(s) 334, 401
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 127, 734
XspI CTAG 2 cut(s) 336, 770
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.