Rw7G040240

Annexin D1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014753
Physical Location & Seq
Forward (+)
62381452 .. 62383728
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040240.1

Sequence Viewer

Length: 918 bp
ATGTCGACCCTTGCAGTCCCAGCACAAGTTCCTTCTCCGGCCGAGGACTCCGAGCAGCTCAAAAAAGCCTTCAAAGGATGGGGAACCAATGAGGACTTGATCATATCCATCTTGGGGCATAGAAATGCCGCTCAAAGAAAGGCTATCCGGAAAACTTATGCCGAAACTTATGGAGAAGATCTCCTCAAGGAACTGGACAAAGAACTTACAAGAGACTTTGAGAGGATTGTTATGCTTTGGACGCTTGATCCTGCTGAGCGCGATGCATTTTTAGCCAATGAGGCAACAAAGAAGTGGACTTCAAGCAATCAGGTTCTTGCAGAAATAGCCTGCTCTAGGTCATCACATGGCCTACTTTTGTCCCTTGAAGAGGATGTTGCACATCACACAACTGGGGACTTCCGCAAGCTTTTGGTGCCCCTTGTCAGCTCATATAGATATGAGGGAGATGAGGTGAACATAACTCTGGCAAAATCAGAGGCTAAGCTACTCCATGAAAAGATCTCCGACAAAGAATACAATCATGAGGAGATCATCAGGATTTTGGCTACACGTAGCAAAGCGCAGATCAATGCAACTCTCAATCACTACAAGAATGAATTTGGTAATGATATCAATAAGGATTTGAAAGCTGACCCCAAGGACGAGTACCTTGCAATTCTAAGGTCCACAATCAAGTGCTTGATCCGCCCTGAGAAGTATTTCGAGAAGTCTCTTCGTCTGGCAATCAACAGACTAGGAACGGATGAAGGTGCTCTCACCAGAGTTGTTGCTACAAGGGCTGAGGTTGACCTGAAGATTATAAAGGAGGAGTACCACAAGAGGAATAGTGTCACTCTGGATCAGGGCATTAAGAAAGACACTCATGGAGATTATGAGTCAATGCTACTGGCCCTGGTTGGACATGAGAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

305

Amino Acids

34.6

Weight (kDa)

6.1

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 16 - 79 1.2e-20 Annexin
Annexin PF00191 160 - 217 4.1e-13 Annexin
Annexin PF00191 234 - 299 3.3e-17 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014753)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37610
malus_domestica MD08G1182000.v1.1 MD15G1367300.v1.1
prunus_persica Prupe.1G515200_v2.0.a1
pyrus_communis pycom08g15520 pycom15g32930
rosa_chinensis RchiOBHm_Chr7g0239291
rosa_laevigata RLG00000000766
rosa_multiflora Rmu_sc0007840.1_g000005 Rmu_sc0026864.1_g000001
rosa_roxburghii Rroxscaffold_3G00221050
rosa_rugosa Rorug07G0327100
rosa_samantha Rh7AG480400 Rh7BG453100 Rh7CG498300 Rh7DG466400
rosa_wichuraiana Rw7G040240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 803
AccB1I GGYRCC 1 cut(s) 415
AccBSI CCGCTC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 147
AciI CCGC 3 cut(s) 129, 403, 688
AclWI GGATC 3 cut(s) 242, 679, 849
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 815
AfaI GTAC 2 cut(s) 650, 815
AfiI CCNNNNNNNGG 3 cut(s) 114, 336, 370
AflIII ACRYGT 1 cut(s) 551
AgsI TTSAA 4 cut(s) 73, 303, 368, 628
AjnI CCWGG 1 cut(s) 894
AluBI AGCT 5 cut(s) 58, 409, 429, 487, 632
AluI AGCT 5 cut(s) 58, 409, 429, 487, 632
Alw21I GWGCWC 1 cut(s) 757
Alw26I GTCTC 2 cut(s) 207, 717
AlwI GGATC 3 cut(s) 242, 679, 849
Aor13HI TCCGGA 1 cut(s) 147
AoxI GGCC 3 cut(s) 39, 349, 891
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 701
AspLEI GCGC 2 cut(s) 261, 565
AspS9I GGNCC 2 cut(s) 666, 892
AsuHPI GGTGA 2 cut(s) 466, 751
AvaII GGWCC 1 cut(s) 666
BaeGI GKGCMC 1 cut(s) 420
BanI GGYRCC 1 cut(s) 415
Bbv12I GWGCWC 1 cut(s) 757
BbvCI CCTCAGC 1 cut(s) 783
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 72, 116
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciT130I CCWGG 1 cut(s) 896
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 207, 717
BfaI CTAG 2 cut(s) 336, 737
BglI GCCNNNNNGGC 1 cut(s) 281
BglII AGATCT 2 cut(s) 178, 501
BisI GCNGC 2 cut(s) 56, 129
BlpI GCTNAGC 2 cut(s) 255, 483
BlsI GCNGC 2 cut(s) 57, 130
Bme1390I CCNGG 1 cut(s) 896
Bme18I GGWCC 1 cut(s) 666
BmgT120I GGNCC 2 cut(s) 666, 892
BmiI GGNNCC 2 cut(s) 85, 417
BmrFI CCNGG 1 cut(s) 896
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 402
BplI GAGNNNNNCTC 2 cut(s) 165, 197
Bpu10I CCTNAGC 1 cut(s) 783
Bpu1102I GCTNAGC 2 cut(s) 255, 483
BpuEI CTTGAG 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 554
BsaJI CCNNGG 3 cut(s) 42, 639, 894
BsaWI WCCGGW 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 336, 370
Bse1I ACTGG 3 cut(s) 198, 397, 894
BseAI TCCGGA 1 cut(s) 147
BseBI CCWGG 1 cut(s) 896
BseDI CCNNGG 3 cut(s) 42, 639, 894
BseGI GGATG 3 cut(s) 83, 379, 751
BseLI CCNNNNNNNGG 3 cut(s) 114, 336, 370
BseMII CTCAG 3 cut(s) 246, 684, 774
BseNI ACTGG 3 cut(s) 198, 397, 894
BseRI GAGGAG 3 cut(s) 173, 542, 824
BseSI GKGCMC 1 cut(s) 420
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 261
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 3 cut(s) 41, 351, 893
BshNI GGYRCC 1 cut(s) 415
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 757
BsiSI CCGG 2 cut(s) 38, 148
BslFI GGGAC 3 cut(s) 2, 346, 410
BslI CCNNNNNNNGG 3 cut(s) 114, 336, 370
BsmAI GTCTC 2 cut(s) 207, 717
BsmFI GGGAC 3 cut(s) 2, 346, 410
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 3 cut(s) 41, 351, 893
Bsp1286I GDGCHC 2 cut(s) 420, 757
Bsp13I TCCGGA 1 cut(s) 147
Bsp143I GATC 8 cut(s) 99, 178, 247, 501, 531, 567, 684, 841
Bsp1720I GCTNAGC 2 cut(s) 255, 483
BspACI CCGC 3 cut(s) 129, 403, 688
BspANI GGCC 3 cut(s) 41, 351, 893
BspCNI CTCAG 3 cut(s) 247, 685, 775
BspEI TCCGGA 1 cut(s) 147
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 85, 417
BspPI GGATC 3 cut(s) 242, 679, 849
BspT107I GGYRCC 1 cut(s) 415
BsrBI CCGCTC 1 cut(s) 131
BsrI ACTGG 3 cut(s) 198, 397, 894
BssECI CCNNGG 3 cut(s) 42, 639, 894
BssMI GATC 8 cut(s) 99, 178, 247, 501, 531, 567, 684, 841
BssT1I CCWWGG 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 896
Bst6I CTCTTC 2 cut(s) 363, 720
BstBAI YACGTR 1 cut(s) 554
BstC8I GCNNGC 2 cut(s) 331, 407
BstDEI CTNAG 5 cut(s) 255, 483, 662, 693, 783
BstENI CCTNNNNNAGG 2 cut(s) 334, 368
BstF5I GGATG 3 cut(s) 83, 379, 751
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 2 cut(s) 261, 565
BstKTI GATC 8 cut(s) 102, 181, 250, 504, 534, 570, 687, 844
BstMAI GTCTC 2 cut(s) 207, 717
BstMBI GATC 8 cut(s) 99, 178, 247, 501, 531, 567, 684, 841
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 8 cut(s) 20, 241, 272, 281, 326, 415, 687, 779
BstNI CCWGG 1 cut(s) 896
BstSCI CCNGG 1 cut(s) 894
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 2 cut(s) 178, 501
BstYI RGATCY 2 cut(s) 178, 501
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 3 cut(s) 41, 351, 893
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 3 cut(s) 83, 379, 751
Cac8I GCNNGC 2 cut(s) 331, 407
CciI TCATGA 1 cut(s) 523
CfoI GCGC 2 cut(s) 261, 565
Cfr13I GGNCC 2 cut(s) 666, 892
CseI GACGC 1 cut(s) 250
Csp6I GTAC 2 cut(s) 649, 814
CviAII CATG 5 cut(s) 347, 494, 524, 866, 905
CviQI GTAC 2 cut(s) 649, 814
DdeI CTNAG 5 cut(s) 255, 483, 662, 693, 783
DpnI GATC 8 cut(s) 101, 180, 249, 503, 533, 569, 686, 843
DpnII GATC 8 cut(s) 99, 178, 247, 501, 531, 567, 684, 841
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 363, 720
EarI CTCTTC 2 cut(s) 363, 720
EciI GGCGGA 1 cut(s) 677
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 639
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 666
Eco52I CGGCCG 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 815
EcoNI CCTNNNNNAGG 2 cut(s) 334, 368
EcoRII CCWGG 1 cut(s) 894
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 1 cut(s) 639
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 5 cut(s) 350, 497, 527, 869, 908
FaqI GGGAC 3 cut(s) 2, 346, 410
FatI CATG 5 cut(s) 346, 493, 523, 865, 904
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 56, 129
FokI GGATG 3 cut(s) 90, 386, 758
Fsp4HI GCNGC 2 cut(s) 56, 129
FspBI CTAG 2 cut(s) 336, 737
GlaI GCGC 2 cut(s) 260, 564
GluI GCNGC 2 cut(s) 56, 129
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 3 cut(s) 41, 351, 893
HapII CCGG 2 cut(s) 38, 148
HgaI GACGC 1 cut(s) 250
HhaI GCGC 2 cut(s) 261, 565
Hin1II CATG 5 cut(s) 350, 497, 527, 869, 908
Hin6I GCGC 2 cut(s) 259, 563
HinP1I GCGC 2 cut(s) 259, 563
HincII GTYRAC 2 cut(s) 6, 790
HindII GTYRAC 2 cut(s) 6, 790
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 2 cut(s) 47, 878
HpaII CCGG 2 cut(s) 38, 148
HphI GGTGA 2 cut(s) 466, 751
Hpy166II GTNNAC 5 cut(s) 6, 297, 457, 669, 790
Hpy188I TCNGA 3 cut(s) 52, 478, 508
Hpy188III TCNNGA 5 cut(s) 148, 524, 538, 706, 839
Hpy8I GTNNAC 5 cut(s) 6, 297, 457, 669, 790
HpyAV CCTTC 3 cut(s) 42, 79, 743
HpyCH4IV ACGT 1 cut(s) 553
HpyCH4V TGCA 6 cut(s) 14, 266, 320, 380, 575, 656
HpyF10VI GCNNNNNNNGC 8 cut(s) 20, 241, 272, 281, 326, 415, 687, 779
HpyF3I CTNAG 5 cut(s) 255, 483, 662, 693, 783
HpySE526I ACGT 1 cut(s) 553
Hsp92II CATG 5 cut(s) 350, 497, 527, 869, 908
HspAI GCGC 2 cut(s) 259, 563
Kpn2I TCCGGA 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 8 cut(s) 99, 178, 247, 501, 531, 567, 684, 841
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 336, 737
MaeII ACGT 1 cut(s) 553
MaeIII GTNAC 1 cut(s) 832
MalI GATC 8 cut(s) 101, 180, 249, 503, 533, 569, 686, 843
MbiI CCGCTC 1 cut(s) 131
MboI GATC 8 cut(s) 99, 178, 247, 501, 531, 567, 684, 841
MboII GAAGA 4 cut(s) 188, 380, 707, 808
MflI RGATCY 2 cut(s) 178, 501
MhlI GDGCHC 2 cut(s) 420, 757
MluCI AATT 2 cut(s) 599, 657
MlyI GAGTC 2 cut(s) 41, 887
MmeI TCCRAC 2 cut(s) 531, 880
Mph1103I ATGCAT 1 cut(s) 268
MroI TCCGGA 1 cut(s) 147
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 2 cut(s) 852, 916
MslI CAYNNNNRTG 2 cut(s) 123, 909
MspI CCGG 2 cut(s) 38, 148
MspR9I CCNGG 1 cut(s) 896
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 1 cut(s) 896
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 8 cut(s) 20, 241, 272, 281, 326, 415, 687, 779
NdeII GATC 8 cut(s) 99, 178, 247, 501, 531, 567, 684, 841
NlaIII CATG 5 cut(s) 350, 497, 527, 869, 908
NlaIV GGNNCC 2 cut(s) 85, 417
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 832
NsiI ATGCAT 1 cut(s) 268
PagI TCATGA 1 cut(s) 523
PctI GAATGC 1 cut(s) 916
PdmI GAANNNNTTC 1 cut(s) 701
PkrI GCNGC 2 cut(s) 57, 130
PleI GAGTC 2 cut(s) 41, 886
PpsI GAGTC 2 cut(s) 41, 886
Ppu21I YACGTR 1 cut(s) 554
PsiI TTATAA 1 cut(s) 803
Psp6I CCWGG 1 cut(s) 894
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 894
PspN4I GGNNCC 2 cut(s) 85, 417
PspPI GGNCC 2 cut(s) 666, 892
PsuI RGATCY 2 cut(s) 178, 501
RsaI GTAC 2 cut(s) 650, 815
RsaNI GTAC 2 cut(s) 649, 814
RseI CAYNNNNRTG 2 cut(s) 123, 909
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 852, 916
SatI GCNGC 2 cut(s) 56, 129
Sau3AI GATC 8 cut(s) 99, 178, 247, 501, 531, 567, 684, 841
Sau96I GGNCC 2 cut(s) 666, 892
SchI GAGTC 2 cut(s) 41, 887
ScrFI CCNGG 1 cut(s) 896
SduI GDGCHC 2 cut(s) 420, 757
SfaNI GCATC 1 cut(s) 253
SinI GGWCC 1 cut(s) 666
SmiMI CAYNNNNRTG 2 cut(s) 123, 909
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 599, 657
SsiI CCGC 3 cut(s) 129, 403, 688
SspMI CTAG 2 cut(s) 336, 737
StyD4I CCNGG 1 cut(s) 894
StyI CCWWGG 1 cut(s) 639
TaiI ACGT 1 cut(s) 556
TaqI TCGA 2 cut(s) 5, 705
TasI AATT 2 cut(s) 599, 657
TauI GCSGC 1 cut(s) 131
Tru1I TTAA 2 cut(s) 852, 916
Tru9I TTAA 2 cut(s) 852, 916
TseFI GTSAC 1 cut(s) 832
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 3 cut(s) 510, 612, 762
TspGWI ACGGA 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 666
XagI CCTNNNNNAGG 2 cut(s) 334, 368
XapI RAATTY 1 cut(s) 599
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 701
XspI CTAG 2 cut(s) 336, 737
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.