Rmu_sc0026864.1_g000001

Annexin D1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026864.1
OG0014753
Physical Location & Seq
Forward (+)
1 .. 1885
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026864.1_g000001.1.cds

Sequence Viewer

Length: 862 bp
tgaggacttgatcatatccgtcttggggcatagaaatgctgctcaaagaaaggctatccggaaaacttatgccgaaacttatggagaagatctcctcaaggaactggacaaagaacttacaagagactttgagaggattgttatgctttggacgcttgatcctgctgagcgcgatgcatttttagccaatgaggcaacaaagaagtggacttcaagcaatcaggttcttgcagaaatagcctgctctaggtcatcacatggcctacttttggcaaggcaggaatatcattctcgctacaagaagtcccttgaagaggatgttgcacatcacacaactggggacttccgcaagcttttggtgccccttgtcagctcatatagatatgagggagatgaggtgaacataactctggcaaaatcagaggctaagctactccatgaaaagatctccgacaaagaatacaatcatgaggagatcatcaggattttggctacacgtagcaaagcgcagatcaatgcaactctcaatcactacaagaatgaatttggtaatgatatcaataaggatttgaaagctgaccccaaggacgaataccttgcaattctaaggtccacaatcaagtgcttgatccgccctgagaagtatttcgagaagtctcttcgtctggcaatcaacagactaggaacggatgaaggtgctctcaccagagttgttgctacaagggctgaagttgacctgaagattataaaggaggagtaccacaagaggaatagtgtcactctggatcagggcattaagaaagacactcatggagattatgagtcaatgctactggccctggttggacatgagaatgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

286

Amino Acids

32.86

Weight (kDa)

6.66

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014753)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37610
malus_domestica MD08G1182000.v1.1 MD15G1367300.v1.1
prunus_persica Prupe.1G515200_v2.0.a1
pyrus_communis pycom08g15520 pycom15g32930
rosa_chinensis RchiOBHm_Chr7g0239291
rosa_laevigata RLG00000000766
rosa_multiflora Rmu_sc0007840.1_g000005 Rmu_sc0026864.1_g000001
rosa_roxburghii Rroxscaffold_3G00221050
rosa_rugosa Rorug07G0327100
rosa_samantha Rh7AG480400 Rh7BG453100 Rh7CG498300 Rh7DG466400
rosa_wichuraiana Rw7G040240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 359
AccII CGCG 1 cut(s) 172
AccIII TCCGGA 1 cut(s) 58
AciI CCGC 2 cut(s) 347, 632
AclWI GGATC 3 cut(s) 153, 623, 793
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 2 cut(s) 748, 759
AfaI GTAC 1 cut(s) 759
AfiI CCNNNNNNNGG 4 cut(s) 25, 247, 269, 314
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 3 cut(s) 214, 312, 572
AjnI CCWGG 1 cut(s) 838
AluBI AGCT 4 cut(s) 353, 373, 431, 576
AluI AGCT 4 cut(s) 353, 373, 431, 576
Alw21I GWGCWC 1 cut(s) 701
Alw26I GTCTC 2 cut(s) 118, 661
AlwI GGATC 3 cut(s) 153, 623, 793
Aor13HI TCCGGA 1 cut(s) 58
AoxI GGCC 2 cut(s) 260, 835
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 645
AspLEI GCGC 2 cut(s) 172, 509
AspS9I GGNCC 2 cut(s) 610, 836
AsuHPI GGTGA 2 cut(s) 410, 695
AvaII GGWCC 1 cut(s) 610
BaeGI GKGCMC 1 cut(s) 364
BanI GGYRCC 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 701
BbvI GCAGC 1 cut(s) 26
BcgI CGANNNNNNTGC 2 cut(s) 579, 613
BciT130I CCWGG 1 cut(s) 840
BclI TGATCA 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 118, 661
BfaI CTAG 2 cut(s) 247, 681
BglI GCCNNNNNGGC 1 cut(s) 192
BglII AGATCT 2 cut(s) 89, 445
BisI GCNGC 1 cut(s) 40
BlpI GCTNAGC 2 cut(s) 166, 427
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 840
Bme18I GGWCC 1 cut(s) 610
BmgT120I GGNCC 2 cut(s) 610, 836
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 840
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 346
BplI GAGNNNNNCTC 2 cut(s) 76, 108
Bpu1102I GCTNAGC 2 cut(s) 166, 427
BpuEI CTTGAG 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 583, 838
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 247, 269, 314
Bse1I ACTGG 3 cut(s) 109, 341, 838
BseAI TCCGGA 1 cut(s) 58
BseBI CCWGG 1 cut(s) 840
BseDI CCNNGG 2 cut(s) 583, 838
BseGI GGATG 2 cut(s) 323, 695
BseLI CCNNNNNNNGG 4 cut(s) 25, 247, 269, 314
BseMII CTCAG 2 cut(s) 157, 628
BseNI ACTGG 3 cut(s) 109, 341, 838
BseRI GAGGAG 3 cut(s) 84, 486, 768
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 262, 837
BshNI GGYRCC 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 701
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 2 cut(s) 290, 354
BslI CCNNNNNNNGG 4 cut(s) 25, 247, 269, 314
BsmAI GTCTC 2 cut(s) 118, 661
BsmFI GGGAC 2 cut(s) 290, 354
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 2 cut(s) 262, 837
Bsp1286I GDGCHC 2 cut(s) 364, 701
Bsp13I TCCGGA 1 cut(s) 58
Bsp143I GATC 8 cut(s) 10, 89, 158, 445, 475, 511, 628, 785
Bsp1720I GCTNAGC 2 cut(s) 166, 427
BspACI CCGC 2 cut(s) 347, 632
BspANI GGCC 2 cut(s) 262, 837
BspCNI CTCAG 2 cut(s) 158, 629
BspEI TCCGGA 1 cut(s) 58
BspFNI CGCG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 467
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 3 cut(s) 153, 623, 793
BspT107I GGYRCC 1 cut(s) 359
BsrI ACTGG 3 cut(s) 109, 341, 838
BssECI CCNNGG 2 cut(s) 583, 838
BssMI GATC 8 cut(s) 10, 89, 158, 445, 475, 511, 628, 785
BssT1I CCWWGG 1 cut(s) 583
Bst2UI CCWGG 1 cut(s) 840
Bst6I CTCTTC 2 cut(s) 307, 664
BstBAI YACGTR 1 cut(s) 498
BstC8I GCNNGC 2 cut(s) 242, 351
BstDEI CTNAG 4 cut(s) 166, 427, 606, 637
BstENI CCTNNNNNAGG 2 cut(s) 245, 312
BstF5I GGATG 2 cut(s) 323, 695
BstFNI CGCG 1 cut(s) 172
BstHHI GCGC 2 cut(s) 172, 509
BstKTI GATC 8 cut(s) 13, 92, 161, 448, 478, 514, 631, 788
BstMAI GTCTC 2 cut(s) 118, 661
BstMBI GATC 8 cut(s) 10, 89, 158, 445, 475, 511, 628, 785
BstMWI GCNNNNNNNGC 7 cut(s) 152, 183, 192, 237, 359, 631, 723
BstNI CCWGG 1 cut(s) 840
BstSCI CCNGG 1 cut(s) 838
BstSLI GKGCMC 1 cut(s) 364
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 2 cut(s) 89, 445
BstYI RGATCY 2 cut(s) 89, 445
BsuRI GGCC 2 cut(s) 262, 837
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 2 cut(s) 323, 695
Cac8I GCNNGC 2 cut(s) 242, 351
CciI TCATGA 1 cut(s) 467
CfoI GCGC 2 cut(s) 172, 509
Cfr13I GGNCC 2 cut(s) 610, 836
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 758
CviAII CATG 5 cut(s) 258, 438, 468, 810, 849
CviQI GTAC 1 cut(s) 758
DdeI CTNAG 4 cut(s) 166, 427, 606, 637
DpnI GATC 8 cut(s) 12, 91, 160, 447, 477, 513, 630, 787
DpnII GATC 8 cut(s) 10, 89, 158, 445, 475, 511, 628, 785
Eam1104I CTCTTC 2 cut(s) 307, 664
EarI CTCTTC 2 cut(s) 307, 664
EciI GGCGGA 1 cut(s) 621
Eco130I CCWWGG 1 cut(s) 583
Eco32I GATATC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 610
Eco57I CTGAAG 2 cut(s) 748, 759
EcoNI CCTNNNNNAGG 2 cut(s) 245, 312
EcoRII CCWGG 1 cut(s) 838
EcoRV GATATC 1 cut(s) 557
EcoT14I CCWWGG 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 5 cut(s) 261, 441, 471, 813, 852
FaqI GGGAC 2 cut(s) 290, 354
FatI CATG 5 cut(s) 257, 437, 467, 809, 848
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 2 cut(s) 330, 702
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 2 cut(s) 247, 681
GlaI GCGC 2 cut(s) 171, 508
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 2 cut(s) 262, 837
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 172, 509
Hin1II CATG 5 cut(s) 261, 441, 471, 813, 852
Hin6I GCGC 2 cut(s) 170, 507
HinP1I GCGC 2 cut(s) 170, 507
HincII GTYRAC 1 cut(s) 734
HindII GTYRAC 1 cut(s) 734
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 1 cut(s) 822
HpaII CCGG 1 cut(s) 59
HphI GGTGA 2 cut(s) 410, 695
Hpy166II GTNNAC 4 cut(s) 208, 401, 613, 734
Hpy188I TCNGA 2 cut(s) 422, 452
Hpy188III TCNNGA 5 cut(s) 59, 468, 482, 650, 783
Hpy8I GTNNAC 4 cut(s) 208, 401, 613, 734
HpyAV CCTTC 1 cut(s) 687
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 5 cut(s) 177, 231, 324, 519, 600
HpyF10VI GCNNNNNNNGC 7 cut(s) 152, 183, 192, 237, 359, 631, 723
HpyF3I CTNAG 4 cut(s) 166, 427, 606, 637
HpySE526I ACGT 1 cut(s) 497
Hsp92II CATG 5 cut(s) 261, 441, 471, 813, 852
HspAI GCGC 2 cut(s) 170, 507
Kpn2I TCCGGA 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 8 cut(s) 10, 89, 158, 445, 475, 511, 628, 785
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 164
MaeI CTAG 2 cut(s) 247, 681
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 1 cut(s) 776
MalI GATC 8 cut(s) 12, 91, 160, 447, 477, 513, 630, 787
MboI GATC 8 cut(s) 10, 89, 158, 445, 475, 511, 628, 785
MboII GAAGA 4 cut(s) 99, 324, 651, 752
MflI RGATCY 2 cut(s) 89, 445
MhlI GDGCHC 2 cut(s) 364, 701
MluCI AATT 2 cut(s) 543, 601
MlyI GAGTC 1 cut(s) 831
MmeI TCCRAC 2 cut(s) 475, 824
Mph1103I ATGCAT 1 cut(s) 179
MroI TCCGGA 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 645
MseI TTAA 2 cut(s) 796, 860
MslI CAYNNNNRTG 2 cut(s) 34, 853
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 840
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 1 cut(s) 840
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 7 cut(s) 152, 183, 192, 237, 359, 631, 723
NdeII GATC 8 cut(s) 10, 89, 158, 445, 475, 511, 628, 785
NlaIII CATG 5 cut(s) 261, 441, 471, 813, 852
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 776
NsiI ATGCAT 1 cut(s) 179
PagI TCATGA 1 cut(s) 467
PctI GAATGC 1 cut(s) 860
PdmI GAANNNNTTC 1 cut(s) 645
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 830
PpsI GAGTC 1 cut(s) 830
Ppu21I YACGTR 1 cut(s) 498
PsiI TTATAA 1 cut(s) 747
Psp6I CCWGG 1 cut(s) 838
PspGI CCWGG 1 cut(s) 838
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 2 cut(s) 610, 836
PsuI RGATCY 2 cut(s) 89, 445
RsaI GTAC 1 cut(s) 759
RsaNI GTAC 1 cut(s) 758
RseI CAYNNNNRTG 2 cut(s) 34, 853
SaqAI TTAA 2 cut(s) 796, 860
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 8 cut(s) 10, 89, 158, 445, 475, 511, 628, 785
Sau96I GGNCC 2 cut(s) 610, 836
SchI GAGTC 1 cut(s) 831
ScrFI CCNGG 1 cut(s) 840
SduI GDGCHC 2 cut(s) 364, 701
SfaNI GCATC 1 cut(s) 164
SinI GGWCC 1 cut(s) 610
SmiMI CAYNNNNRTG 2 cut(s) 34, 853
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 2 cut(s) 543, 601
SsiI CCGC 2 cut(s) 347, 632
SspMI CTAG 2 cut(s) 247, 681
StyD4I CCNGG 1 cut(s) 838
StyI CCWWGG 1 cut(s) 583
TaiI ACGT 1 cut(s) 500
TaqI TCGA 1 cut(s) 649
TasI AATT 2 cut(s) 543, 601
Tru1I TTAA 2 cut(s) 796, 860
Tru9I TTAA 2 cut(s) 796, 860
TseFI GTSAC 1 cut(s) 776
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 776
TspDTI ATGAA 3 cut(s) 454, 556, 706
TspGWI ACGGA 2 cut(s) 8, 702
VpaK11BI GGWCC 1 cut(s) 610
XagI CCTNNNNNAGG 2 cut(s) 245, 312
XapI RAATTY 1 cut(s) 543
XmnI GAANNNNTTC 1 cut(s) 645
XspI CTAG 2 cut(s) 247, 681
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.