pycom08g15520

Annexin D1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0014753
Physical Location & Seq
Reverse (-)
15266741 .. 15267247
507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g15520.2

Sequence Viewer

Length: 351 bp
ATGAAAAGATCTCAGACAAGAAGGCCTACAATGATGACGATATCATCAGGATTCTGGCTACGCGGAGCAAGGCACAGACCAATGCAACTCTCGATCACTGCAAAAAAAGAATTCGGGAGTGACATCAACAAGTGTTTTGAAAAGTCTCGTCGTCTGGCATTTAACAAACGAGGAACAGATGAAGGAGCCCTCACTGGAGTTGTCGATACGACGGCTGAGGTTGACGTGAAGATTATCAAGGACCTGTACCACAAAAGCAACAGCGTCCCTCTGTATCAGGCCATTAAAGAAGACACTAATGGAGAATATGAAAAAATGCTTCTGGCCCTGGTTGGGCATGAGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

117

Amino Acids

13.16

Weight (kDa)

9.48

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014753)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37610
malus_domestica MD08G1182000.v1.1 MD15G1367300.v1.1
prunus_persica Prupe.1G515200_v2.0.a1
pyrus_communis pycom08g15520 pycom15g32930
rosa_chinensis RchiOBHm_Chr7g0239291
rosa_laevigata RLG00000000766
rosa_multiflora Rmu_sc0007840.1_g000005 Rmu_sc0026864.1_g000001
rosa_roxburghii Rroxscaffold_3G00221050
rosa_rugosa Rorug07G0327100
rosa_samantha Rh7AG480400 Rh7BG453100 Rh7CG498300 Rh7DG466400
rosa_wichuraiana Rw7G040240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 63
AciI CCGC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 333
AgsI TTSAA 1 cut(s) 140
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 150
AoxI GGCC 3 cut(s) 23, 279, 324
ApoI RAATTY 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 241, 325
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 216
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 150
BglII AGATCT 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 329
Bme18I GGWCC 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 241, 325
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 327
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse1I ACTGG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 26, 207
BseNI ACTGG 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 3 cut(s) 25, 281, 326
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 3 cut(s) 25, 281, 326
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 2 cut(s) 8, 93
BspACI CCGC 1 cut(s) 63
BspANI GGCC 3 cut(s) 25, 281, 326
BspCNI CTCAG 2 cut(s) 25, 208
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 2 cut(s) 8, 93
Bst2UI CCWGG 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 12, 216
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 1 cut(s) 63
BstKTI GATC 2 cut(s) 11, 96
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 8, 93
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 327
BstUI CGCG 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 3 cut(s) 25, 281, 326
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 192
Cfr13I GGNCC 2 cut(s) 241, 325
CseI GACGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 338
CviJI RGCY 6 cut(s) 25, 58, 188, 215, 281, 326
CviKI_1 RGCY 6 cut(s) 25, 58, 188, 215, 281, 326
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 12, 216
DpnI GATC 2 cut(s) 10, 95
DpnII GATC 2 cut(s) 8, 93
Eco147I AGGCCT 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 190
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 327
EcoRV GATATC 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 190
FaeI CATG 1 cut(s) 341
FaiI YATR 2 cut(s) 309, 339
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 337
FriOI GRGCYC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 3 cut(s) 25, 281, 326
HgaI GACGC 1 cut(s) 253
Hin1II CATG 1 cut(s) 341
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 3 cut(s) 48, 91, 115
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 2 cut(s) 153, 214
HpyAV CCTTC 2 cut(s) 15, 176
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 85, 101
HpyF3I CTNAG 2 cut(s) 12, 216
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 1 cut(s) 341
Kzo9I GATC 2 cut(s) 8, 93
LmnI GCTCC 2 cut(s) 65, 185
LpnPI CCDG 9 cut(s) 33, 40, 140, 180, 257, 263, 308, 314, 341
LweI GCATC 1 cut(s) 334
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 119
MalI GATC 2 cut(s) 10, 95
MboI GATC 2 cut(s) 8, 93
MboII GAAGA 2 cut(s) 241, 302
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 1 cut(s) 110
MnlI CCTC 5 cut(s) 164, 200, 211, 279, 334
MseI TTAA 2 cut(s) 162, 285
MslI CAYNNNNRTG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 1 cut(s) 63
NdeII GATC 2 cut(s) 8, 93
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 119
PceI AGGCCT 1 cut(s) 25
PfeI GAWTC 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 241, 325
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 2 cut(s) 162, 285
Sau3AI GATC 2 cut(s) 8, 93
Sau96I GGNCC 2 cut(s) 241, 325
ScrFI CCNGG 1 cut(s) 329
SduI GDGCHC 1 cut(s) 190
SetI ASST 3 cut(s) 222, 228, 246
SfaNI GCATC 1 cut(s) 334
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 1 cut(s) 63
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 327
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 92, 204
TasI AATT 1 cut(s) 110
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 2 cut(s) 162, 285
Tru9I TTAA 2 cut(s) 162, 285
TscAI CASTG 2 cut(s) 103, 199
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 3 cut(s) 17, 195, 324
TspRI CASTG 2 cut(s) 103, 199
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.