Rmu_sc0007840.1_g000005

Annexin D1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007840.1
OG0014753
Physical Location & Seq
Reverse (-)
29650 .. 31163
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007840.1_g000005.1.cds

Sequence Viewer

Length: 720 bp
atgctttggacgcttgatcctgctgagcgcgatgcatttttagccaatgaggcaacaaagaagtggacttcaagcaatcaggttcttgcagaaatagcctgctctaggtcatcacatggcctacttttggcaaggcaggaatatcattctcgctacaaaaagtcccttgaagaggatgttgcacatcacacaactggggacttccgcaagcttttggtgccccttgtcagctcatatagatatgagggagatgaggtgaacataactctggcaaaatcagaggctaagctactccatgaaaagatctccgacaaagaatacaatcatgaggagatcatcaggattttggctacacgtagcaaagcgcagatcaatgcaactctcaatcactacaagaatgaatttggtaatgatatcaataaggatttgaaagctgaccccaaggacgagtaccttgcaattctaaggtccacaatcaagtgcttgatccgccctgagaagtatttcgagaagtctcttcgtctggcaatcaacagactaggaacggatgaaggtgctctcaccagagttgttgctacaagggctgaagttgacctgaagattataaaggaggagtaccacaagaggaatagtgtcactctggatcagggcattaagaaagacactcatggagattatgagtcaatgctactggccctggttggacatgagaatgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

239

Amino Acids

27.36

Weight (kDa)

6.81

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014753)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37610
malus_domestica MD08G1182000.v1.1 MD15G1367300.v1.1
prunus_persica Prupe.1G515200_v2.0.a1
pyrus_communis pycom08g15520 pycom15g32930
rosa_chinensis RchiOBHm_Chr7g0239291
rosa_laevigata RLG00000000766
rosa_multiflora Rmu_sc0007840.1_g000005 Rmu_sc0026864.1_g000001
rosa_roxburghii Rroxscaffold_3G00221050
rosa_rugosa Rorug07G0327100
rosa_samantha Rh7AG480400 Rh7BG453100 Rh7CG498300 Rh7DG466400
rosa_wichuraiana Rw7G040240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
AccB1I GGYRCC 1 cut(s) 217
AccII CGCG 1 cut(s) 30
AciI CCGC 2 cut(s) 205, 490
AclWI GGATC 3 cut(s) 11, 481, 651
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 2 cut(s) 606, 617
AfaI GTAC 2 cut(s) 452, 617
AfiI CCNNNNNNNGG 3 cut(s) 105, 127, 172
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 3 cut(s) 72, 170, 430
AjnI CCWGG 1 cut(s) 696
AluBI AGCT 4 cut(s) 211, 231, 289, 434
AluI AGCT 4 cut(s) 211, 231, 289, 434
Alw21I GWGCWC 1 cut(s) 559
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 3 cut(s) 11, 481, 651
AoxI GGCC 2 cut(s) 118, 693
ApoI RAATTY 1 cut(s) 401
Asp700I GAANNNNTTC 1 cut(s) 503
AspLEI GCGC 2 cut(s) 30, 367
AspS9I GGNCC 2 cut(s) 468, 694
AsuHPI GGTGA 2 cut(s) 268, 553
AvaII GGWCC 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 559
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BciT130I CCWGG 1 cut(s) 698
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 2 cut(s) 105, 539
BglI GCCNNNNNGGC 1 cut(s) 50
BglII AGATCT 1 cut(s) 303
BlpI GCTNAGC 2 cut(s) 24, 285
Bme1390I CCNGG 1 cut(s) 698
Bme18I GGWCC 1 cut(s) 468
BmgT120I GGNCC 2 cut(s) 468, 694
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 698
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 22
BmuI ACTGGG 1 cut(s) 204
Bpu1102I GCTNAGC 2 cut(s) 24, 285
BsaAI YACGTR 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 441, 696
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 127, 172
Bse1I ACTGG 2 cut(s) 199, 696
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 2 cut(s) 441, 696
BseGI GGATG 2 cut(s) 181, 553
BseLI CCNNNNNNNGG 3 cut(s) 105, 127, 172
BseMII CTCAG 2 cut(s) 15, 486
BseNI ACTGG 2 cut(s) 199, 696
BseRI GAGGAG 2 cut(s) 344, 626
BseSI GKGCMC 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 120, 695
BshNI GGYRCC 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 559
BslFI GGGAC 2 cut(s) 148, 212
BslI CCNNNNNNNGG 3 cut(s) 105, 127, 172
BsmAI GTCTC 1 cut(s) 519
BsmFI GGGAC 2 cut(s) 148, 212
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 2 cut(s) 120, 695
Bsp1286I GDGCHC 2 cut(s) 222, 559
Bsp143I GATC 6 cut(s) 16, 303, 333, 369, 486, 643
Bsp1720I GCTNAGC 2 cut(s) 24, 285
BspACI CCGC 2 cut(s) 205, 490
BspANI GGCC 2 cut(s) 120, 695
BspCNI CTCAG 2 cut(s) 16, 487
BspFNI CGCG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 3 cut(s) 11, 481, 651
BspT107I GGYRCC 1 cut(s) 217
BsrI ACTGG 2 cut(s) 199, 696
BssECI CCNNGG 2 cut(s) 441, 696
BssMI GATC 6 cut(s) 16, 303, 333, 369, 486, 643
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 698
Bst6I CTCTTC 2 cut(s) 165, 522
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 100, 209
BstDEI CTNAG 4 cut(s) 24, 285, 464, 495
BstENI CCTNNNNNAGG 2 cut(s) 103, 170
BstF5I GGATG 2 cut(s) 181, 553
BstFNI CGCG 1 cut(s) 30
BstHHI GCGC 2 cut(s) 30, 367
BstKTI GATC 6 cut(s) 19, 306, 336, 372, 489, 646
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 6 cut(s) 16, 303, 333, 369, 486, 643
BstMWI GCNNNNNNNGC 7 cut(s) 10, 41, 50, 95, 217, 489, 581
BstNI CCWGG 1 cut(s) 698
BstSCI CCNGG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuRI GGCC 2 cut(s) 120, 695
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 181, 553
Cac8I GCNNGC 2 cut(s) 100, 209
CciI TCATGA 1 cut(s) 325
CfoI GCGC 2 cut(s) 30, 367
Cfr13I GGNCC 2 cut(s) 468, 694
CseI GACGC 1 cut(s) 19
Csp6I GTAC 2 cut(s) 451, 616
CviAII CATG 5 cut(s) 116, 296, 326, 668, 707
CviQI GTAC 2 cut(s) 451, 616
DdeI CTNAG 4 cut(s) 24, 285, 464, 495
DpnI GATC 6 cut(s) 18, 305, 335, 371, 488, 645
DpnII GATC 6 cut(s) 16, 303, 333, 369, 486, 643
Eam1104I CTCTTC 2 cut(s) 165, 522
EarI CTCTTC 2 cut(s) 165, 522
EciI GGCGGA 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 441
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 606, 617
EcoNI CCTNNNNNAGG 2 cut(s) 103, 170
EcoRII CCWGG 1 cut(s) 696
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 5 cut(s) 119, 299, 329, 671, 710
FaqI GGGAC 2 cut(s) 148, 212
FatI CATG 5 cut(s) 115, 295, 325, 667, 706
FokI GGATG 2 cut(s) 188, 560
FspBI CTAG 2 cut(s) 105, 539
GlaI GCGC 2 cut(s) 29, 366
HaeIII GGCC 2 cut(s) 120, 695
HgaI GACGC 1 cut(s) 19
HhaI GCGC 2 cut(s) 30, 367
Hin1II CATG 5 cut(s) 119, 299, 329, 671, 710
Hin6I GCGC 2 cut(s) 28, 365
HinP1I GCGC 2 cut(s) 28, 365
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 1 cut(s) 680
HphI GGTGA 2 cut(s) 268, 553
Hpy166II GTNNAC 4 cut(s) 66, 259, 471, 592
Hpy188I TCNGA 2 cut(s) 280, 310
Hpy188III TCNNGA 4 cut(s) 326, 340, 508, 641
Hpy8I GTNNAC 4 cut(s) 66, 259, 471, 592
HpyAV CCTTC 1 cut(s) 545
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 5 cut(s) 35, 89, 182, 377, 458
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 41, 50, 95, 217, 489, 581
HpyF3I CTNAG 4 cut(s) 24, 285, 464, 495
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 5 cut(s) 119, 299, 329, 671, 710
HspAI GCGC 2 cut(s) 28, 365
Kzo9I GATC 6 cut(s) 16, 303, 333, 369, 486, 643
LweI GCATC 1 cut(s) 22
MaeI CTAG 2 cut(s) 105, 539
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 1 cut(s) 634
MalI GATC 6 cut(s) 18, 305, 335, 371, 488, 645
MboI GATC 6 cut(s) 16, 303, 333, 369, 486, 643
MboII GAAGA 3 cut(s) 182, 509, 610
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 2 cut(s) 222, 559
MluCI AATT 2 cut(s) 401, 459
MlyI GAGTC 1 cut(s) 689
MmeI TCCRAC 2 cut(s) 333, 682
MnlI CCTC 8 cut(s) 43, 166, 238, 247, 274, 322, 604, 618
Mph1103I ATGCAT 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 503
MseI TTAA 2 cut(s) 654, 718
MslI CAYNNNNRTG 1 cut(s) 711
MspR9I CCNGG 1 cut(s) 698
Mva1269I GAATGC 1 cut(s) 718
MvaI CCWGG 1 cut(s) 698
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 7 cut(s) 10, 41, 50, 95, 217, 489, 581
NdeII GATC 6 cut(s) 16, 303, 333, 369, 486, 643
NlaIII CATG 5 cut(s) 119, 299, 329, 671, 710
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 634
NsiI ATGCAT 1 cut(s) 37
PagI TCATGA 1 cut(s) 325
PctI GAATGC 1 cut(s) 718
PdmI GAANNNNTTC 1 cut(s) 503
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
Ppu21I YACGTR 1 cut(s) 356
PsiI TTATAA 1 cut(s) 605
Psp6I CCWGG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 2 cut(s) 468, 694
PsuI RGATCY 1 cut(s) 303
RsaI GTAC 2 cut(s) 452, 617
RsaNI GTAC 2 cut(s) 451, 616
RseI CAYNNNNRTG 1 cut(s) 711
SaqAI TTAA 2 cut(s) 654, 718
Sau3AI GATC 6 cut(s) 16, 303, 333, 369, 486, 643
Sau96I GGNCC 2 cut(s) 468, 694
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 1 cut(s) 698
SduI GDGCHC 2 cut(s) 222, 559
SfaNI GCATC 1 cut(s) 22
SinI GGWCC 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 711
Sse9I AATT 2 cut(s) 401, 459
SsiI CCGC 2 cut(s) 205, 490
SspMI CTAG 2 cut(s) 105, 539
StyD4I CCNGG 1 cut(s) 696
StyI CCWWGG 1 cut(s) 441
TaiI ACGT 1 cut(s) 358
TaqI TCGA 1 cut(s) 507
TasI AATT 2 cut(s) 401, 459
Tru1I TTAA 2 cut(s) 654, 718
Tru9I TTAA 2 cut(s) 654, 718
TseFI GTSAC 1 cut(s) 634
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 3 cut(s) 312, 414, 564
TspGWI ACGGA 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 468
XagI CCTNNNNNAGG 2 cut(s) 103, 170
XapI RAATTY 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 503
XspI CTAG 2 cut(s) 105, 539
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.