FvH4_5g38250

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
28281013 .. 28290002
8990 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38250.t1

Sequence Viewer

Length: 222 bp
ATGTCTATGAGCTATGGCCTTGCTGAAGCATATGTGATGAGAGACCTGCACAAGAAGAAGCTGAAGAAGGAAGAAGAAGAAGAAAGGGCCAGGCTGGGCATGGCTAGATCGGAAACAACCAGCTCCGGTGATTGTTTGTTCCGGCTTAAGAAGAAAGTGCATCCAAGCAATCCCAAGAGGACTAATAGTTCAGCACAAGTTGGGGGGATTTCGGATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.24

Weight (kDa)

9.61

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 54
AcuI CTGAAG 2 cut(s) 45, 83
AflII CTTAAG 1 cut(s) 146
AjnI CCWGG 1 cut(s) 89
AloI GAACNNNNNNTCC 2 cut(s) 172, 204
AluBI AGCT 3 cut(s) 12, 61, 123
AluI AGCT 3 cut(s) 12, 61, 123
Alw26I GTCTC 1 cut(s) 36
AoxI GGCC 2 cut(s) 16, 87
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 125
BseBI CCWGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 94
BsgI GTGCAG 1 cut(s) 32
BshFI GGCC 2 cut(s) 18, 89
BsiSI CCGG 2 cut(s) 126, 142
BsmAI GTCTC 1 cut(s) 36
BsnI GGCC 2 cut(s) 18, 89
Bso31I GGTCTC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 107, 214
BspANI GGCC 2 cut(s) 18, 89
BspMI ACCTGC 1 cut(s) 54
BspTI CTTAAG 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 36
BssMI GATC 2 cut(s) 107, 214
Bst2UI CCWGG 1 cut(s) 91
BstAFI CTTAAG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 2 cut(s) 110, 217
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 2 cut(s) 107, 214
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 89
BsuRI GGCC 2 cut(s) 18, 89
BtsCI GGATG 1 cut(s) 160
BveI ACCTGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 87
CviAII CATG 1 cut(s) 100
CviJI RGCY 8 cut(s) 12, 18, 61, 89, 94, 104, 123, 145
CviKI_1 RGCY 8 cut(s) 12, 18, 61, 89, 94, 104, 123, 145
DpnI GATC 2 cut(s) 109, 216
DpnII GATC 2 cut(s) 107, 214
Eco31I GGTCTC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 45, 83
EcoRII CCWGG 1 cut(s) 89
FaeI CATG 1 cut(s) 103
FaiI YATR 5 cut(s) 8, 15, 31, 33, 101
FatI CATG 1 cut(s) 99
FauNDI CATATG 1 cut(s) 31
FokI GGATG 1 cut(s) 147
FspBI CTAG 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 18, 89
HapII CCGG 2 cut(s) 126, 142
Hin1II CATG 1 cut(s) 103
HpaII CCGG 2 cut(s) 126, 142
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 112, 214
HpyAV CCTTC 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 49, 160
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 2 cut(s) 107, 214
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 7 cut(s) 59, 76, 80, 103, 133, 139, 155
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 105
MalI GATC 2 cut(s) 109, 216
MboI GATC 2 cut(s) 107, 214
MboII GAAGA 7 cut(s) 67, 76, 83, 86, 89, 92, 163
MnlI CCTC 1 cut(s) 171
MseI TTAA 2 cut(s) 147, 220
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 2 cut(s) 126, 142
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
NdeI CATATG 1 cut(s) 31
NdeII GATC 2 cut(s) 107, 214
NlaIII CATG 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 89
PspPI GGNCC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 147, 220
Sau3AI GATC 2 cut(s) 107, 214
Sau96I GGNCC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 91
SetI ASST 4 cut(s) 14, 48, 63, 125
SfaNI GCATC 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 89
Tru1I TTAA 2 cut(s) 147, 220
Tru9I TTAA 2 cut(s) 147, 220
Vha464I CTTAAG 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.