Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013687

Physical Location & Seq

Genomic Coordinates Reverse (-)

21360168 .. 21362198

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1175800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTGAAAGAGCCGCGGTTATCAAAGGATTGGATCTAGCTGCAAGCTTAGGCTTCACAAAAGTGATGGTGGAGAGTGCTTCGATTAAGTGCTTGAAGGGTGACATAGAAAAGGGTGCTTGGGAAATCTATCCACTCTTGTTGGAAATAAGATCGAAGAAGATCAATTTTGAAGACCTACATTGGAAGTGGTCTACTCACGAGGCAAATGGTGCCGCTCACCATGTTGCCTTGCTTGCTTTGAGGATTGTGGAACGTCAAAGTTGGGTCGATAGACCACCAATTTCCCTGGTTTTTGCTCAAGGACGACCTTCCCTATCCTCCAAACTAATTTTGGGTATTTTGGCTGCTCTCTTGGACAACCCTCTTTTGGTGGCCTTTGGCAAGCTGTCTTGTTTCTGTCTGGGTTATGATCTAGCTGAAGCATATGCGCCGAGAGACCTCCACTGGAAGAAGCTGAAGATGGAAAAACAAGAAAGAGCCAAGCTTGGCACGGCTGAATCCAAAGTGGTAAAATCTAGGTTGTTTCTTTCTGGTGTTAAGAAAAATCCATCCAAGCAATTTCCAAACCACTTGTTCTGCAGAAAATTCGAAACTTTACACTTAGATGGTCCTTCAACGGCTTTTAGGAATATAACAATTTCAAACTTTACTGTAACATTTTTTTCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

225

Amino Acids

25.1

Weight (kDa)

9.53

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38250
malus_domestica	MD08G1175800.v1.1
prunus_persica	Prupe.1G509400_v2.0.a1 Prupe.1G509800_v2.0.a1 Prupe.1G509900_v2.0.a1
pyrus_communis	pycom08g15060
rosa_chinensis	RchiOBHm_Chr7g0240191 RchiOBHm_Chr7g0240201 RchiOBHm_Chr7g0240211
rosa_multiflora	Rmu_sc0008135.1_g000001 Rmu_sc0009827.1_g000003
rosa_roxburghii	Rroxscaffold_3G00220300 Rroxscaffold_3G00220310
rosa_rugosa	Rorug07G0334200 Rorug07G0334300
rosa_samantha	Rh7AG487900 Rh7BG461100 Rh7CG504400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	1 cut(s)	17
AciI	CCGC	3 cut(s)	15, 17, 216
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	2 cut(s)	441, 479
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	97, 173, 618, 645
AjnI	CCWGG	1 cut(s)	288
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	6 cut(s)	41, 48, 388, 419, 457, 487
AluI	AGCT	6 cut(s)	41, 48, 388, 419, 457, 487
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	41, 347
ApoI	RAATTY	1 cut(s)	587
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	1 cut(s)	611
AsuHPI	GGTGA	2 cut(s)	113, 212
AsuII	TTCGAA	1 cut(s)	591
AvaII	GGWCC	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	212
BauI	CACGAG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	28, 334
BccI	CCATC	4 cut(s)	61, 457, 559, 602
BceAI	ACGGC	2 cut(s)	510, 636
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	3 cut(s)	38, 416, 519
BfmI	CTRYAG	1 cut(s)	580
BisI	GCNGC	4 cut(s)	15, 42, 216, 348
BlsI	GCNGC	4 cut(s)	16, 43, 217, 349
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	49
Bpu14I	TTCGAA	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	15, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	15, 288
BseGI	GGATG	1 cut(s)	551
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseNI	ACTGG	1 cut(s)	452
BseXI	GCAGC	2 cut(s)	28, 334
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	432
Bsp119I	TTCGAA	1 cut(s)	591
Bsp143I	GATC	4 cut(s)	34, 152, 162, 412
BspACI	CCGC	3 cut(s)	15, 17, 216
BspANI	GGCC	1 cut(s)	377
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	584
BspPI	GGATC	1 cut(s)	42
BspT104I	TTCGAA	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	432
BsrBI	CCGCTC	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	15, 288
BssMI	GATC	4 cut(s)	34, 152, 162, 412
BssSI	CACGAG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	655
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	591
BstC8I	GCNNGC	3 cut(s)	46, 237, 386
BstDEI	CTNAG	2 cut(s)	49, 604
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	551
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	4 cut(s)	37, 155, 165, 415
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	4 cut(s)	34, 152, 162, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 212, 236
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	580
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	28, 334
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	551
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	3 cut(s)	46, 237, 386
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	611
Cfr42I	CCGCGG	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	123, 158
CviAII	CATG	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	49, 604
DpnI	GATC	4 cut(s)	36, 154, 164, 414
DpnII	GATC	4 cut(s)	34, 152, 162, 412
Eco31I	GGTCTC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	611
Eco57I	CTGAAG	2 cut(s)	441, 479
EcoRII	CCWGG	1 cut(s)	288
FaeI	CATG	1 cut(s)	227
FaiI	YATR	6 cut(s)	107, 225, 411, 427, 429, 635
FatI	CATG	1 cut(s)	223
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	15, 42, 216, 348
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	4 cut(s)	15, 42, 216, 348
FspBI	CTAG	3 cut(s)	38, 416, 519
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	4 cut(s)	15, 42, 216, 348
HaeIII	GGCC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HindIII	AAGCTT	2 cut(s)	46, 485
HinfI	GANTC	1 cut(s)	500
HphI	GGTGA	2 cut(s)	113, 212
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	91, 321, 624
HpyCH4III	ACNGT	1 cut(s)	655
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	44, 582
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 212, 236
HpyF3I	CTNAG	2 cut(s)	49, 604
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	431
KspI	CCGCGG	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	34, 152, 162, 412
LpnPI	CCDG	5 cut(s)	275, 302, 389, 433, 519
Lsp1109I	GCAGC	2 cut(s)	28, 334
MaeI	CTAG	3 cut(s)	38, 416, 519
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	101, 655
MalI	GATC	4 cut(s)	36, 154, 164, 414
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	4 cut(s)	34, 152, 162, 412
MboII	GAAGA	5 cut(s)	169, 172, 185, 463, 472
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	6 cut(s)	166, 282, 330, 560, 587, 639
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	5 cut(s)	196, 237, 331, 375, 452
MseI	TTAA	2 cut(s)	87, 540
MslI	CAYNNNNRTG	2 cut(s)	62, 606
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	11, 212, 236
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	4 cut(s)	34, 152, 162, 412
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	1 cut(s)	214
NmeAIII	GCCGAG	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	591
OliI	CACNNNNGTG	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	500
PkrI	GCNGC	4 cut(s)	16, 43, 217, 349
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	611
PstI	CTGCAG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	62, 606
SacII	CCGCGG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	87, 540
SatI	GCNGC	4 cut(s)	15, 42, 216, 348
Sau3AI	GATC	4 cut(s)	34, 152, 162, 412
Sau96I	GGNCC	1 cut(s)	611
ScrFI	CCNGG	1 cut(s)	290
SfcI	CTRYAG	1 cut(s)	580
Sfr303I	CCGCGG	1 cut(s)	18
SfuI	TTCGAA	1 cut(s)	591
SgrBI	CCGCGG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	611
SmiMI	CAYNNNNRTG	2 cut(s)	62, 606
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	6 cut(s)	166, 282, 330, 560, 587, 639
SsiI	CCGC	3 cut(s)	15, 17, 216
SspMI	CTAG	3 cut(s)	38, 416, 519
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	655
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	4 cut(s)	83, 155, 270, 591
TasI	AATT	6 cut(s)	166, 282, 330, 560, 587, 639
TauI	GCSGC	2 cut(s)	17, 218
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	87, 540
Tru9I	TTAA	2 cut(s)	87, 540
TscAI	CASTG	1 cut(s)	452
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	41, 347
Tsp45I	GTSAC	1 cut(s)	101
TspRI	CASTG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	611
XapI	RAATTY	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	3 cut(s)	38, 416, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.