Rmu_sc0008135.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008135.1
Physical Location & Seq
Reverse (-)
672 .. 1046
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008135.1_g000001.1.cds

Sequence Viewer

Length: 375 bp
atgtcatacttgcctcttcttgctccccacgccaaagcaaacctcaataaatacaaccaattctccgaaaccctttacaacatcccctttttcttcctgaaatcgaagaccaatttcgtacacacttgcttttctgaaaactctaagacaatgtcgatggctacctctggttttgctgaagcatatgtgatgagagacctgcacaagaagaagctgaagaaggaagaagaagaagaaagggcgaggttgggcatggctagatcagaaacagccaactctggtggttgtttcttctgggttatgaagaaagtgcatccaagcaatcctcagaggactaattgttcagcacaagttggggggacttccgatcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.1

Weight (kDa)

9.35

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AcuI CTGAAG 2 cut(s) 198, 236
AfaI GTAC 1 cut(s) 120
AloI GAACNNNNNNTCC 2 cut(s) 325, 357
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 113
BccI CCATC 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 207
BmsI GCATC 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
BseGI GGATG 2 cut(s) 81, 313
BseMII CTCAG 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 260, 367
BspCNI CTCAG 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 189
BssMI GATC 2 cut(s) 260, 367
Bst6I CTCTTC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 144, 327
BstF5I GGATG 2 cut(s) 81, 313
BstKTI GATC 2 cut(s) 263, 370
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 260, 367
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 113
BtsCI GGATG 2 cut(s) 81, 313
BveI ACCTGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 119
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 1 cut(s) 253
CviJI RGCY 4 cut(s) 161, 214, 257, 272
CviKI_1 RGCY 4 cut(s) 161, 214, 257, 272
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 2 cut(s) 144, 327
DpnI GATC 2 cut(s) 262, 369
DpnII GATC 2 cut(s) 260, 367
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 189
Eco57I CTGAAG 2 cut(s) 198, 236
FaeI CATG 1 cut(s) 256
FaiI YATR 5 cut(s) 7, 184, 186, 254, 302
FatI CATG 1 cut(s) 252
FauNDI CATATG 1 cut(s) 184
FokI GGATG 2 cut(s) 68, 300
FspBI CTAG 1 cut(s) 258
Hin1II CATG 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 5 cut(s) 67, 136, 265, 330, 367
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 202, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 144, 327
Hsp92II CATG 1 cut(s) 256
Kzo9I GATC 2 cut(s) 260, 367
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 5 cut(s) 110, 153, 212, 264, 280
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 258
MalI GATC 2 cut(s) 262, 369
MboI GATC 2 cut(s) 260, 367
MluCI AATT 3 cut(s) 59, 112, 337
MnlI CCTC 6 cut(s) 24, 53, 175, 237, 324, 336
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeI CATATG 1 cut(s) 184
NdeII GATC 2 cut(s) 260, 367
NlaIII CATG 1 cut(s) 256
PflFI GACNNNGTC 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 151
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
Sau3AI GATC 2 cut(s) 260, 367
SetI ASST 5 cut(s) 45, 167, 201, 216, 248
SfaNI GCATC 1 cut(s) 322
Sse9I AATT 3 cut(s) 59, 112, 337
SspMI CTAG 1 cut(s) 258
TaqI TCGA 2 cut(s) 104, 155
TasI AATT 3 cut(s) 59, 112, 337
TspDTI ATGAA 1 cut(s) 317
Tth111I GACNNNGTC 1 cut(s) 151
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.