RchiOBHm_Chr7g0240201

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
66171830 .. 66172053
224 bp
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UTR
Exon/CDS
Intron
PRQ21531

Sequence Viewer

Length: 210 bp
ATGTCCATGGCTGGTTTCGATCTTGCTGAAGCGTATGTGCTGCAAGATCGCCACAGAAAGAAAATGAAGATGGAAATGGAAAAGGCCAAGTCAGGCACAGCCGAATCTAAAATAGTAAAGTCTAGTTGTTTATTCTGGGAGTTGAAGGAAGTCTATGCAAGCAATGCAAAGAAGACTTGCTCAGCTGAAAATGCAGAAGTCGGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.71

Weight (kDa)

8.6

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 48
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 64
BfaI CTAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 41
BlpI GCTNAGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 179
Bpu1102I GCTNAGC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 6
Bse3DI GCAATG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 6
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 86
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 19, 46
Bsp1720I GCTNAGC 1 cut(s) 181
Bsp19I CCATGG 1 cut(s) 6
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 2 cut(s) 19, 46
BssT1I CCWWGG 1 cut(s) 6
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 6
BstKTI GATC 2 cut(s) 22, 49
BstMBI GATC 2 cut(s) 19, 46
BstMWI GCNNNNNNNGC 2 cut(s) 164, 191
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 86
BtgI CCRYGG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 160
CviAII CATG 1 cut(s) 7
CviJI RGCY 4 cut(s) 11, 86, 101, 185
CviKI_1 RGCY 4 cut(s) 11, 86, 101, 185
DdeI CTNAG 1 cut(s) 181
DpnI GATC 2 cut(s) 21, 48
DpnII GATC 2 cut(s) 19, 46
Eco130I CCWWGG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 10
FaiI YATR 3 cut(s) 8, 36, 156
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 123
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 1 cut(s) 10
HinfI GANTC 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 43, 158, 167, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 191
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 2 cut(s) 19, 46
LpnPI CCDG 2 cut(s) 78, 121
Lsp1109I GCAGC 1 cut(s) 27
MaeI CTAG 1 cut(s) 123
MalI GATC 2 cut(s) 21, 48
MboI GATC 2 cut(s) 19, 46
MboII GAAGA 2 cut(s) 79, 184
MspA1I CMGCKG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 164, 191
NcoI CCATGG 1 cut(s) 6
NdeII GATC 2 cut(s) 19, 46
NlaIII CATG 1 cut(s) 10
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 185
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 19, 46
SetI ASST 1 cut(s) 187
SspMI CTAG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 1 cut(s) 18
TfiI GAWTC 1 cut(s) 104
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 80
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.