Prupe.1G509900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
42005435 .. 42006323
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G509900.1

Sequence Viewer

Length: 252 bp
ATGTCGACGGTAGGTTATGGTTTTGCTGAGGCATATGTGCTCAGAGGCCTCCACAAGAAGAAGCTGAAGATGGAGCAAGAAGAAGAAAGAGCCAAGCTGGGTGGAGCTGAATCTGAAATGGCTCAGCCTAGTGGTTGTTTGTTTCGGGTGATGAAGAAAGTCCATCCAAGCAATGGTCAGAGTCAAAGGGCTTGTTCAGCTGAAACAGATGAAACTGGAGAAGTTGGGGCTTTGAACCAGAAAGTAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.1

Weight (kDa)

8.64

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 173
AccI GTMKAC 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 4 cut(s) 64, 97, 107, 200
AluI AGCT 4 cut(s) 64, 97, 107, 200
Alw21I GWGCWC 1 cut(s) 42
AoxI GGCC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 27
BccI CCATC 2 cut(s) 64, 171
BfaI CTAG 1 cut(s) 129
BlpI GCTNAGC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 178
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 3 cut(s) 18, 55, 137
BseNI ACTGG 1 cut(s) 220
BseYI CCCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 173
BsnI GGCC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 42
Bsp1720I GCTNAGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 3 cut(s) 19, 54, 136
BsrDI GCAATG 1 cut(s) 178
BsrI ACTGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 10
BstDEI CTNAG 3 cut(s) 27, 41, 123
BstF5I GGATG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 163
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
DdeI CTNAG 3 cut(s) 27, 41, 123
Eco147I AGGCCT 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 86
FaiI YATR 3 cut(s) 18, 34, 36
FauNDI CATATG 1 cut(s) 34
FblI GTMKAC 1 cut(s) 5
FokI GGATG 1 cut(s) 150
FspBI CTAG 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 48
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 110, 181
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 44, 115, 180
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 3 cut(s) 27, 41, 123
LmnI GCTCC 2 cut(s) 73, 104
LpnPI CCDG 2 cut(s) 83, 201
MaeI CTAG 1 cut(s) 129
MboII GAAGA 5 cut(s) 70, 79, 92, 95, 166
MhlI GDGCHC 1 cut(s) 42
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 3 cut(s) 22, 38, 59
MspA1I CMGCKG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeI CATATG 1 cut(s) 34
PceI AGGCCT 1 cut(s) 48
PfeI GAWTC 1 cut(s) 110
PflMI CCANNNNNTGG 1 cut(s) 173
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 200
SalI GTCGAC 1 cut(s) 4
SchI GAGTC 1 cut(s) 190
SduI GDGCHC 1 cut(s) 42
SetI ASST 5 cut(s) 16, 66, 99, 109, 202
SgeI CNNG 9 cut(s) 67, 89, 106, 110, 141, 158, 180, 204, 228
SseBI AGGCCT 1 cut(s) 48
SspMI CTAG 1 cut(s) 129
StuI AGGCCT 1 cut(s) 48
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 5
TfiI GAWTC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 167, 225
Van91I CCANNNNNTGG 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.